EWM21509.1, cds9162 (CDS) Nannochloropsis gaditana

Overview
NameEWM21509.1
Unique Namecds9162
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:69476..69528 +
Alignment locationKK037252.1:69586..69656 +
Alignment locationKK037252.1:69775..70163 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21509.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100019g78.531.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:69476..69528 +
KK037252.1supercontigKK037252.1:69586..69656 +
KK037252.1supercontigKK037252.1:69775..70163 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM21509.1 vs. NCBI_GenBank
Match: gi|585101739|gb|EWM21509.1| (hypothetical protein Naga_100019g78 [Nannochloropsis gaditana])

HSP 1 Score: 348.206 bits (892), Expect = 2.214e-121
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0 
Query:    1 MYMRYLESSLVISYNGGPTTETLTTRPDLATLPLVQGRGCMRIGAGFKRPSRQIPRFPRKGDMTDSDESRGTEDSSRLEDPLSATDLEFFVQNGFVLLKKAFDPDVAAACRSEIWRVIEGESRAAREEGNNQGKASVAGRVVGQRLEREWGCSTEGVWTAATGQVASPPP 170
            MYMRYLESSLVISYNGGPTTETLTTRPDLATLPLVQGRGCMRIGAGFKRPSRQIPRFPRKGDMTDSDESRGTEDSSRLEDPLSATDLEFFVQNGFVLLKKAFDPDVAAACRSEIWRVIEGESRAAREEGNNQGKASVAGRVVGQRLEREWGCSTEGVWTAATGQVASPPP
Sbjct:    1 MYMRYLESSLVISYNGGPTTETLTTRPDLATLPLVQGRGCMRIGAGFKRPSRQIPRFPRKGDMTDSDESRGTEDSSRLEDPLSATDLEFFVQNGFVLLKKAFDPDVAAACRSEIWRVIEGESRAAREEGNNQGKASVAGRVVGQRLEREWGCSTEGVWTAATGQVASPPP 170
[Close]
BLAST of EWM21509.1 vs. NCBI_GenBank
Match: gi|298713818|emb|CBJ27190.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 60.4622 bits (145), Expect = 6.794e-8
Identity = 26/54 (48.15%), Postives = 39/54 (72.22%), Query Frame = 0 
Query:   68 ESRGTEDSSRLEDPLSATDLEFFVQNGFVLLKKAFDPDVAAACRSEIWRVIEGE 121
            +S+ +  +   E PLS  D+  F +NGFV+LK+AFDPDVAAACR  +W+ ++G+
Sbjct:   22 QSQDSHGAGSSEVPLSPEDIRSFEENGFVMLKRAFDPDVAAACRESLWKRLKGD 75
The following BLAST results are available for this feature:
BLAST of EWM21509.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585101739|gb|EWM21509.1|2.214e-121100.00hypothetical protein Naga_100019g78 [Nannochlorops... [more]
gi|298713818|emb|CBJ27190.1|6.794e-848.15conserved unknown protein [Ectocarpus siliculosus][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9192rna9192Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications