EWM21555.1, cds9117 (CDS) Nannochloropsis gaditana

Overview
NameEWM21555.1
Unique Namecds9117
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:442466..442959 -
Alignment locationKK037251.1:442062..442299 -
Alignment locationKK037251.1:441726..441901 -
Alignment locationKK037251.1:441360..441532 -

Link to JBrowse

Properties
Property NameValue
Start range441360
Start range.
Protein idEWM21555.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101135g1.5596.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:442466..442959 -
KK037251.1supercontigKK037251.1:442062..442299 -
KK037251.1supercontigKK037251.1:441726..441901 -
KK037251.1supercontigKK037251.1:441360..441532 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM21555.1 vs. NCBI_GenBank
Match: gi|585101806|gb|EWM21555.1| (hypothetical protein Naga_101135g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 703.36 bits (1814), Expect = 0.000e+0
Identity = 360/360 (100.00%), Postives = 360/360 (100.00%), Query Frame = 0 
Query:    1 MKAAKAPFNFGGQKGSKGSDIAALESALQQLLLRATDARPTATAPLPSASFLPRSMLRTLLSSGLDAAAPESVRLLSYRVLAEGRGIARQGGAAPEAIESLKAVVLRELQTDMQEEGQDRGVDEGEGGGEDVFAQVDADTDNVRIWALRALLNNATDAHLLLFLRDTAFLTGLKAAVSPPSPTDPLRPAVLFYLGVQALPRLAAALPSLPLTAVLPPFTSVEEERRVREEAQDGILDMLKLFLQAAELPHDVASAQAFQALDAFVETGVPRRLRRRVHALLGEEGEEELPSATATSMTLAFMRHTLPRFPRLLLRAAALPPTSPSSAPALSFLSRLLAHALLETTNAQGLHLHLPHQKYV 360
            MKAAKAPFNFGGQKGSKGSDIAALESALQQLLLRATDARPTATAPLPSASFLPRSMLRTLLSSGLDAAAPESVRLLSYRVLAEGRGIARQGGAAPEAIESLKAVVLRELQTDMQEEGQDRGVDEGEGGGEDVFAQVDADTDNVRIWALRALLNNATDAHLLLFLRDTAFLTGLKAAVSPPSPTDPLRPAVLFYLGVQALPRLAAALPSLPLTAVLPPFTSVEEERRVREEAQDGILDMLKLFLQAAELPHDVASAQAFQALDAFVETGVPRRLRRRVHALLGEEGEEELPSATATSMTLAFMRHTLPRFPRLLLRAAALPPTSPSSAPALSFLSRLLAHALLETTNAQGLHLHLPHQKYV
Sbjct:    1 MKAAKAPFNFGGQKGSKGSDIAALESALQQLLLRATDARPTATAPLPSASFLPRSMLRTLLSSGLDAAAPESVRLLSYRVLAEGRGIARQGGAAPEAIESLKAVVLRELQTDMQEEGQDRGVDEGEGGGEDVFAQVDADTDNVRIWALRALLNNATDAHLLLFLRDTAFLTGLKAAVSPPSPTDPLRPAVLFYLGVQALPRLAAALPSLPLTAVLPPFTSVEEERRVREEAQDGILDMLKLFLQAAELPHDVASAQAFQALDAFVETGVPRRLRRRVHALLGEEGEEELPSATATSMTLAFMRHTLPRFPRLLLRAAALPPTSPSSAPALSFLSRLLAHALLETTNAQGLHLHLPHQKYV 360
[Close]
BLAST of EWM21555.1 vs. NCBI_GenBank
Match: gi|553189799|ref|XP_005855076.1| (hypothetical protein NGA_0406900 [Nannochloropsis gaditana CCMP526] >gi|422293983|gb|EKU21283.1| hypothetical protein NGA_0406900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 319.316 bits (817), Expect = 2.472e-106
Identity = 163/165 (98.79%), Postives = 163/165 (98.79%), Query Frame = 0 
Query:    1 MKAAKAPFNFGGQKGSKGSDIAALESALQQLLLRATDARPTATAPLPSASFLPRSMLRTLLSSGLDAAAPESVRLLSYRVLAEGRGIARQGGAAPEAIESLKAVVLRELQTDMQEEGQDRGVDEGEGGGEDVFAQVDADTDNVRIWALRALLNNATDAHLLLFLR 165
            MKAAKAPFNFGGQKGSKGSDIAALESALQQLLLRATDARPTATAPLPSASFLPRSMLRTLLSSGLDAAAPESVRLLSYRVLAEGRGIARQGGAAPEAIESLKAVVLRELQTDMQEEGQDRGVD  EGGGEDVFAQVDADTDNVRIWALRALLNNATDAHLLLFLR
Sbjct:    1 MKAAKAPFNFGGQKGSKGSDIAALESALQQLLLRATDARPTATAPLPSASFLPRSMLRTLLSSGLDAAAPESVRLLSYRVLAEGRGIARQGGAAPEAIESLKAVVLRELQTDMQEEGQDRGVD--EGGGEDVFAQVDADTDNVRIWALRALLNNATDAHLLLFLR 163
The following BLAST results are available for this feature:
BLAST of EWM21555.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585101806|gb|EWM21555.1|0.000e+0100.00hypothetical protein Naga_101135g1, partial [Nanno... [more]
gi|553189799|ref|XP_005855076.1|2.472e-10698.79hypothetical protein NGA_0406900 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9147rna9147Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications