EWM21558.1, cds9115 (CDS) Nannochloropsis gaditana

Overview
NameEWM21558.1
Unique Namecds9115
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:434983..435075 -
Alignment locationKK037251.1:434583..434834 -
Alignment locationKK037251.1:434124..434348 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21558.1
ProductGolgi apparatus membrane protein TVP15
Orig transcript idgnl|cribi|Naga_100559g4.1313.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:434983..435075 -
KK037251.1supercontigKK037251.1:434583..434834 -
KK037251.1supercontigKK037251.1:434124..434348 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR013714Golgi_TVP15
Homology
BLAST of EWM21558.1 vs. NCBI_GenBank
Match: gi|553178763|ref|XP_005852601.1| (hypothetical protein NGA_0712000 [Nannochloropsis gaditana CCMP526] >gi|422295933|gb|EKU23232.1| hypothetical protein NGA_0712000 [Nannochloropsis gaditana CCMP526] >gi|585101812|gb|EWM21558.1| Golgi apparatus membrane protein TVP15 [Nannochloropsis gaditana])

HSP 1 Score: 386.341 bits (991), Expect = 6.743e-136
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0
Query:    1 MPSDASLPSHATPNPPPGHVRDRVRAHAALKIFTVINWITIIAAILAAIAELLSLIYTKPRTLPGFTVRLYCLFFLLVIVLSEIEWSKPVRDSAITTSWFWRGAFQVFVAALVYEMQPGGDNLSAVKRNFIAFAAIVLLVVGFLYAAMGLCFVKRWRDTQLAKYRTMRAHAEMADALQNDASLAGSPQA 189
            MPSDASLPSHATPNPPPGHVRDRVRAHAALKIFTVINWITIIAAILAAIAELLSLIYTKPRTLPGFTVRLYCLFFLLVIVLSEIEWSKPVRDSAITTSWFWRGAFQVFVAALVYEMQPGGDNLSAVKRNFIAFAAIVLLVVGFLYAAMGLCFVKRWRDTQLAKYRTMRAHAEMADALQNDASLAGSPQA
Sbjct:    1 MPSDASLPSHATPNPPPGHVRDRVRAHAALKIFTVINWITIIAAILAAIAELLSLIYTKPRTLPGFTVRLYCLFFLLVIVLSEIEWSKPVRDSAITTSWFWRGAFQVFVAALVYEMQPGGDNLSAVKRNFIAFAAIVLLVVGFLYAAMGLCFVKRWRDTQLAKYRTMRAHAEMADALQNDASLAGSPQA 189          
BLAST of EWM21558.1 vs. NCBI_GenBank
Match: gi|299472398|emb|CBN77586.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 95.5153 bits (236), Expect = 1.701e-21
Identity = 53/145 (36.55%), Postives = 85/145 (58.62%), Query Frame = 0
Query:   37 NWITIIAAILAAIAELLSLIYTKPRTLPGFTVRLYCLFFLLVIVLSEIEWSKPVRDSAITTSWFWRGAFQVFVAALVYEMQ-PGGDNLSAVKRNFIAFAAIVLLVVGFLYAAMGLCFVKRWRDTQLAKYRTMRAHAEMADALQND 180
            N IT+IAA+   +A+ + L Y K  +     VR Y + F ++I+++E+EW+  VR+  +  SW  RG    FV  LV E +   G +L      +I   A +++ +G LY  +GLC VKR RD ++A+++T+ AHAEM  A++ D
Sbjct:   23 NAITVIAALGVGVAQGMVLGYHKDLSPESVAVRCYNILFCMLIIMAELEWTTTVREMFVLHSWIPRGVVYSFVGVLVLEEEDEKGLDLGGFGL-YITIIAWIMVGIGALYFLLGLCCVKRIRDKKMARHKTLVAHAEMQAAMRRD 166          
BLAST of EWM21558.1 vs. NCBI_GenBank
Match: gi|585110883|gb|EWM28473.1| (Golgi apparatus membrane protein TVP15 [Nannochloropsis gaditana])

HSP 1 Score: 82.8037 bits (203), Expect = 1.539e-15
Identity = 50/164 (30.49%), Postives = 89/164 (54.27%), Query Frame = 0
Query:   21 RDRVRAHAALKIFTVINWITIIAAILAAIAELLSLIYTKPRTLPGFTVRLYCLFFLLVIVLSEIEWSKPVRDSAITTSWFWRGAFQVFVAALVYEMQPGGDNLSAVKRNFIAFAAIVLLVVGFLYAAMGLCFVKRWRDTQLAKYRTMRAHAEMADALQNDASLA 184
            R  +R    L IF  IN + +++A+  A+AE+LS++Y     L G  +R+Y + F + +V +E+ W++ VRD+ +  +W  RGA   FV  L  + +   +    +   FI  A + L+ +G LY  MG+  +K  RD + A Y  +++ AE+ +AL+    + 
Sbjct:  101 RQDIRRGCCLSIFLAINAVCVLSALSVAVAEILSIVYHGLSPL-GIAIRVYGIVFSIGVVFTELGWTQAVRDTWLLQNWISRGAIYTFVGLLSIKQEVEHEARINIVNVFIYCAGLGLIGLGVLYFVMGVFCLKGVRDRRAADYTILKSQAELEEALRRHGDVG 263          
The following BLAST results are available for this feature:
BLAST of EWM21558.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|553178763|ref|XP_005852601.1|6.743e-136100.00hypothetical protein NGA_0712000 [Nannochloropsis ... [more]
gi|299472398|emb|CBN77586.1|1.701e-2136.55conserved unknown protein [Ectocarpus siliculosus][more]
gi|585110883|gb|EWM28473.1|1.539e-1530.49Golgi apparatus membrane protein TVP15 [Nannochlor... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9145rna9145Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications