EWM21641.1, cds9090 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM21641.1
Unique Name	cds9090
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037251.1:382434..384329 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM21641.1
Product	Peroxin/Dysferlin domain protein
Orig transcript id	gnl\|cribi\|Naga_100012g71.1973.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:382434..384329 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **INTERPRO**
Term	Definition
IPR010482	Peroxin/Dysferlin

Homology

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BLAST of EWM21641.1 vs. NCBI_GenBank
Match: gi|585101896|gb|EWM21641.1| (Peroxin/Dysferlin domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1301.19 bits (3366), Expect = 0.000e+0
Identity = 631/631 (100.00%), Postives = 631/631 (100.00%), Query Frame = 0

Query:    1 MEANPSVQCGWRSTTRRKVTSTSLIGTTPRRIMPILLTALSLLSLTKSSASLSGLLLSSSTSTPDRVEWSTNGTAEALAHNTGSLDGVSALPSSTSSTVTSSARFSTQHRLVQIYENEKWEFGRGWRRPGEGGRFRTWTYADGGKSVPPQEAQLPDGFQWASLDWKIARDNNTDRAGWCYADHFQSFNKQHRVHRKRSFSDRFRRRRWVRLMRSTHAKHLDDSQQLRDILLPLSVEEGEQGDGILGEKYASDKNGDSISFTSSGLDLLAIADLPNIECNRDVKSILSALSTCRGFLNRLREEYQFKGFAVTLTKSLLHRDIGCGFGIPLTPNFLMWERIDFLPTINSCLGMFFPFCVSGWISFSYPADLVYRFLAHFLPVLPLGPQASMVLSSTGKHQSYTKMMTGDQRNCSVDHYGGGTFGESSTSDTSAGSGPPSASAFAPGMVVTRSRPKLKKRASVERVGFSVSCRYTRAAGPHFRVTPWLFFLPGKQLVAHLIESILWLMTYVWWVIKASHLPYRLLNHRESAAGIISSTQQPSTVNSTENDAFSSRKRDGRRFKRWVSKKHAGIGYSMNFFRGGLGASLIMSISPFFLKLPPTRLSHSSLKRRRQERDQQRQTEHNLHVEQNRYQ 631
            MEANPSVQCGWRSTTRRKVTSTSLIGTTPRRIMPILLTALSLLSLTKSSASLSGLLLSSSTSTPDRVEWSTNGTAEALAHNTGSLDGVSALPSSTSSTVTSSARFSTQHRLVQIYENEKWEFGRGWRRPGEGGRFRTWTYADGGKSVPPQEAQLPDGFQWASLDWKIARDNNTDRAGWCYADHFQSFNKQHRVHRKRSFSDRFRRRRWVRLMRSTHAKHLDDSQQLRDILLPLSVEEGEQGDGILGEKYASDKNGDSISFTSSGLDLLAIADLPNIECNRDVKSILSALSTCRGFLNRLREEYQFKGFAVTLTKSLLHRDIGCGFGIPLTPNFLMWERIDFLPTINSCLGMFFPFCVSGWISFSYPADLVYRFLAHFLPVLPLGPQASMVLSSTGKHQSYTKMMTGDQRNCSVDHYGGGTFGESSTSDTSAGSGPPSASAFAPGMVVTRSRPKLKKRASVERVGFSVSCRYTRAAGPHFRVTPWLFFLPGKQLVAHLIESILWLMTYVWWVIKASHLPYRLLNHRESAAGIISSTQQPSTVNSTENDAFSSRKRDGRRFKRWVSKKHAGIGYSMNFFRGGLGASLIMSISPFFLKLPPTRLSHSSLKRRRQERDQQRQTEHNLHVEQNRYQ
Sbjct:    1 MEANPSVQCGWRSTTRRKVTSTSLIGTTPRRIMPILLTALSLLSLTKSSASLSGLLLSSSTSTPDRVEWSTNGTAEALAHNTGSLDGVSALPSSTSSTVTSSARFSTQHRLVQIYENEKWEFGRGWRRPGEGGRFRTWTYADGGKSVPPQEAQLPDGFQWASLDWKIARDNNTDRAGWCYADHFQSFNKQHRVHRKRSFSDRFRRRRWVRLMRSTHAKHLDDSQQLRDILLPLSVEEGEQGDGILGEKYASDKNGDSISFTSSGLDLLAIADLPNIECNRDVKSILSALSTCRGFLNRLREEYQFKGFAVTLTKSLLHRDIGCGFGIPLTPNFLMWERIDFLPTINSCLGMFFPFCVSGWISFSYPADLVYRFLAHFLPVLPLGPQASMVLSSTGKHQSYTKMMTGDQRNCSVDHYGGGTFGESSTSDTSAGSGPPSASAFAPGMVVTRSRPKLKKRASVERVGFSVSCRYTRAAGPHFRVTPWLFFLPGKQLVAHLIESILWLMTYVWWVIKASHLPYRLLNHRESAAGIISSTQQPSTVNSTENDAFSSRKRDGRRFKRWVSKKHAGIGYSMNFFRGGLGASLIMSISPFFLKLPPTRLSHSSLKRRRQERDQQRQTEHNLHVEQNRYQ 631

The following BLAST results are available for this feature:

BLAST of EWM21641.1 vs. NCBI_GenBank

BLAST of EWM21641.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585101896\|gb\|EWM21641.1\|	0.000e+0	100.00	Peroxin/Dysferlin domain protein [Nannochloropsis ...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna9120	rna9120	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications