EWM21601.1, cds9074 (CDS) Nannochloropsis gaditana

Overview
NameEWM21601.1
Unique Namecds9074
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:344744..344854 +
Alignment locationKK037251.1:345097..345209 +
Alignment locationKK037251.1:345376..347854 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21601.1
Productccr4-not transcription complex subunit
Orig transcript idgnl|cribi|Naga_100012g55.1933.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:344744..344854 +
KK037251.1supercontigKK037251.1:345097..345209 +
KK037251.1supercontigKK037251.1:345376..347854 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0003723RNA binding
GO:0005515protein binding
GO:0008270zinc ion binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait
IPR013083Znf_RING/FYVE/PHD
IPR003954RRM_dom_euk
Homology
BLAST of EWM21601.1 vs. NCBI_GenBank
Match: gi|585101856|gb|EWM21601.1| (ccr4-not transcription complex subunit [Nannochloropsis gaditana])

HSP 1 Score: 1811.58 bits (4691), Expect = 0.000e+0
Identity = 900/900 (100.00%), Postives = 900/900 (100.00%), Query Frame = 0
Query:    1 MSLSQSDEEEEEEHCPLCCETLDITDRNFFPCPCEYQICCYCWNHIKENLNKLCPACRTPYGDDPHIFSPVDKDEIIKKRKEKKARERAERREREREREKLERRERERDRDIGRPDRDRRDTGVGAIAGSSTSTTTHSTSYLLSPSNGLSHPLHHPLSMALPPPQAPPPPPSSSTHVVDRSTLRNIRVVQRNLAYVLGLPASLASEETLRRPEYFGQYGKIVKVAVTRPAVPPAASGVPGCSAYVTFAHKEDARACIQALDNFVLPVSEGGNGAGRPIRASFGTTKYCNTFLRHVPCNNPECLFLHEVEDDSEGWTREDAIAWQTRMPGSTPGAQVMVGQGGPSGTGRRVAAPIFPPPRWEEPSGGGGGQAYAMPSTTVTAAGNTRQRPGAARPPANPWNQQQQQHPHQHQQQELERQQPVHSHGSLSSQAPPAKAGLLATSTAPSRGPTAHPPTQPARANSISSHKQQQQQSLPPYLVSPSPEMAPGREAATNGPGLGNAAVTGLPQPPPGIISPPQTPNPGGPSLGVLPFDLAAGGSGGLLWSMEGIVQHNGDVGISTDSASELGQEGAEGASPPSLTLFGGEDRLGGIEGMPLPGVREEGGEARKQVRPPGPPGPKVSEKTIQPPLRGGLLSMLWAGGGSSSSGNSQGVLGSGRPFSKAPGLSSSSGESLAEESGSNGGHGALQHPGTHLLFSAFPFAGTGVGEGQKRSGLLGHAGAGSLDRTETGTIGGARTGRGNKDARREAFTATECLVSLLGLDLPDAPSSLSARTRACPPPQQPPVPSSTQAPSSRYSFATEEGGAGGDKAAEGVTGMTRGYVGAGSGEASGSLYPSLRSGVALLQQLLPNCSITYGDGAGTPAHTAGALSSSSGTPSGNSGHVTNSGADKDGRGQGLRPVF 900
            MSLSQSDEEEEEEHCPLCCETLDITDRNFFPCPCEYQICCYCWNHIKENLNKLCPACRTPYGDDPHIFSPVDKDEIIKKRKEKKARERAERREREREREKLERRERERDRDIGRPDRDRRDTGVGAIAGSSTSTTTHSTSYLLSPSNGLSHPLHHPLSMALPPPQAPPPPPSSSTHVVDRSTLRNIRVVQRNLAYVLGLPASLASEETLRRPEYFGQYGKIVKVAVTRPAVPPAASGVPGCSAYVTFAHKEDARACIQALDNFVLPVSEGGNGAGRPIRASFGTTKYCNTFLRHVPCNNPECLFLHEVEDDSEGWTREDAIAWQTRMPGSTPGAQVMVGQGGPSGTGRRVAAPIFPPPRWEEPSGGGGGQAYAMPSTTVTAAGNTRQRPGAARPPANPWNQQQQQHPHQHQQQELERQQPVHSHGSLSSQAPPAKAGLLATSTAPSRGPTAHPPTQPARANSISSHKQQQQQSLPPYLVSPSPEMAPGREAATNGPGLGNAAVTGLPQPPPGIISPPQTPNPGGPSLGVLPFDLAAGGSGGLLWSMEGIVQHNGDVGISTDSASELGQEGAEGASPPSLTLFGGEDRLGGIEGMPLPGVREEGGEARKQVRPPGPPGPKVSEKTIQPPLRGGLLSMLWAGGGSSSSGNSQGVLGSGRPFSKAPGLSSSSGESLAEESGSNGGHGALQHPGTHLLFSAFPFAGTGVGEGQKRSGLLGHAGAGSLDRTETGTIGGARTGRGNKDARREAFTATECLVSLLGLDLPDAPSSLSARTRACPPPQQPPVPSSTQAPSSRYSFATEEGGAGGDKAAEGVTGMTRGYVGAGSGEASGSLYPSLRSGVALLQQLLPNCSITYGDGAGTPAHTAGALSSSSGTPSGNSGHVTNSGADKDGRGQGLRPVF
Sbjct:    1 MSLSQSDEEEEEEHCPLCCETLDITDRNFFPCPCEYQICCYCWNHIKENLNKLCPACRTPYGDDPHIFSPVDKDEIIKKRKEKKARERAERREREREREKLERRERERDRDIGRPDRDRRDTGVGAIAGSSTSTTTHSTSYLLSPSNGLSHPLHHPLSMALPPPQAPPPPPSSSTHVVDRSTLRNIRVVQRNLAYVLGLPASLASEETLRRPEYFGQYGKIVKVAVTRPAVPPAASGVPGCSAYVTFAHKEDARACIQALDNFVLPVSEGGNGAGRPIRASFGTTKYCNTFLRHVPCNNPECLFLHEVEDDSEGWTREDAIAWQTRMPGSTPGAQVMVGQGGPSGTGRRVAAPIFPPPRWEEPSGGGGGQAYAMPSTTVTAAGNTRQRPGAARPPANPWNQQQQQHPHQHQQQELERQQPVHSHGSLSSQAPPAKAGLLATSTAPSRGPTAHPPTQPARANSISSHKQQQQQSLPPYLVSPSPEMAPGREAATNGPGLGNAAVTGLPQPPPGIISPPQTPNPGGPSLGVLPFDLAAGGSGGLLWSMEGIVQHNGDVGISTDSASELGQEGAEGASPPSLTLFGGEDRLGGIEGMPLPGVREEGGEARKQVRPPGPPGPKVSEKTIQPPLRGGLLSMLWAGGGSSSSGNSQGVLGSGRPFSKAPGLSSSSGESLAEESGSNGGHGALQHPGTHLLFSAFPFAGTGVGEGQKRSGLLGHAGAGSLDRTETGTIGGARTGRGNKDARREAFTATECLVSLLGLDLPDAPSSLSARTRACPPPQQPPVPSSTQAPSSRYSFATEEGGAGGDKAAEGVTGMTRGYVGAGSGEASGSLYPSLRSGVALLQQLLPNCSITYGDGAGTPAHTAGALSSSSGTPSGNSGHVTNSGADKDGRGQGLRPVF 900          
BLAST of EWM21601.1 vs. NCBI_GenBank
Match: gi|1210517815|dbj|GAX23216.1| (CCR4-NOT transcription complex subunit 4 [Fistulifera solaris])

HSP 1 Score: 265.388 bits (677), Expect = 3.355e-73
Identity = 149/376 (39.63%), Postives = 211/376 (56.12%), Query Frame = 0
Query:    9 EEEEEHCPLCCETLDITDRNFFPCPCEYQICCYCWNHIKENLNKLCPACRTPYGDDPHIFSPVDKDEIIKKRKEKKARERAERREREREREKLERRERERDRDIGRPDRDRRDTGVGAIAGSSTSTTTHSTSYLLSPSNGLSHPLHHPLSMALPPPQAPPPPPSSSTHVVDRSTLRNIRVVQRNLAYVLGLPASLASEETLRRPEYFGQYGKIVKVAVTRPAVPPAASGVPG----CSAYVTFAHKEDARACIQALDNFVLPVSEGGNGAGRPIRASFGTTKYCNTFLRHVPCNNPECLFLHEVEDDSEGWTRED------------------AIAWQTRMPGSTPGAQVMVGQGGPSGTGRRVAAPIFPPPRWEE 362
            ++ +  CPLCCE LD++DR F+PC C YQ+C +CW+ I+E+ + LCPACRTPYG+DPH FS VD ++++K     KAR+ A +R++++E   L   + +     G P+    + G                      SN         ++M +P                DRS L N+RV++RNL Y +GLPAS+ASE+ LR+PEYFGQYGKI K+ + R     A SG PG     SAYVTF HKED  ACI ALD F L          R IRAS+GT+KYC+ F++ V CNNPEC +LHE+    + +T+++                   ++ Q R+  ++   +  VG GGPSGTGR  ++P+FPPP ++E
Sbjct:    2 DDADHVCPLCCEELDLSDREFYPCKCGYQVCMWCWHRIRESESGLCPACRTPYGEDPHQFSAVDVEDVLKA---NKARDAALKRQKQQEGGMLSASQHD-----GVPNSIVTEDG----------------------SN---------VAMEVPK---------------DRSQLANMRVIRRNLVYAVGLPASIASEDVLRKPEYFGQYGKIAKIVINR-----AISGEPGRRASASAYVTFVHKEDTLACILALDGFYLD--------NRNIRASYGTSKYCSAFIKSVRCNNPECTYLHEMGAAEDTFTKQEIQAGYVTSGRDVLARQQQIVSEQLRLNATSAVPRKRVGGGGPSGTGRASSSPVFPPPEFDE 310          
BLAST of EWM21601.1 vs. NCBI_GenBank
Match: gi|1210530867|dbj|GAX10407.1| (CCR4-NOT transcription complex subunit 4 [Fistulifera solaris])

HSP 1 Score: 260.381 bits (664), Expect = 1.995e-71
Identity = 129/311 (41.48%), Postives = 179/311 (57.56%), Query Frame = 0
Query:    9 EEEEEHCPLCCETLDITDRNFFPCPCEYQICCYCWNHIKENLNKLCPACRTPYGDDPHIFSPVDKDEIIKKRKEKKARERAERREREREREKLERRERERDRDIGRPDRDRRDTGVGAIAGSSTSTTTHSTSYLLSPSNGLSHPLHHPLSMALPPPQAPPPPPSSSTHVVDRSTLRNIRVVQRNLAYVLGLPASLASEETLRRPEYFGQYGKIVKVAVTRPAVPPAASGVPGCSAYVTFAHKEDARACIQALDNFVLPVSEGGNGAGRPIRASFGTTKYCNTFLRHVPCNNPECLFLHEVEDDSEGWTRED 319
            ++ +  CPLCCE LD++DR F+PC C YQ+C +CW+ I+E+ + LCPACRTPYG+DPH FS VD ++++K     KAR+ A +R++++E   L   + E     G P+         ++A    S  T                      M +P                DRS L N+RV++RNL Y +GLPAS+ASE+ LR+PEYFGQYGKI K+ + R A+   A      SAYVTF HKED  ACI ALD F L          R IRAS+GT+KYC+ F++ V CNNPEC +LHE+    + +T+++
Sbjct:    2 DDADHVCPLCCEELDLSDREFYPCKCGYQVCMWCWHRIRESESGLCPACRTPYGEDPHQFSAVDVEDVLKA---NKARDAALKRQKQQEGGMLSASQHE-----GLPN---------SVANEDVSNVT----------------------MEVPK---------------DRSQLANMRVIRRNLVYAVGLPASIASEDVLRKPEYFGQYGKIAKIVINR-AISGDAGRRASASAYVTFVHKEDTLACILALDGFYLD--------NRNIRASYGTSKYCSAFIKSVRCNNPECTYLHEMGATEDTFTKQE 249          
BLAST of EWM21601.1 vs. NCBI_GenBank
Match: gi|1205960150|ref|XP_021317280.1| (uncharacterized protein LOC8059223 isoform X2 [Sorghum bicolor] >gi|992166048|gb|EES07837.2| hypothetical protein SORBI_3005G001000 [Sorghum bicolor])

HSP 1 Score: 200.675 bits (509), Expect = 2.741e-49
Identity = 123/401 (30.67%), Postives = 189/401 (47.13%), Query Frame = 0
Query:    9 EEEEEHCPLCCETLDITDRNFFPCPCEYQICCYCWNHIKENLNKLCPACRTPYGDDPHIFSPVDKDEIIKKRKEKKARERAERREREREREKLERRERERDRDIGRPDRDRRDTGVGAIAGSSTSTTTHSTSYLLSPSNGLSHPLHHPLSMALPPPQAPPPPPSSSTHVVDRSTLRNIRVVQRNLAYVLGLPASLASEETLRRPEYFGQYGKIVKVAVTRPAVPPA-ASGVPGCSAYVTFAHKEDARACIQALDNFVLPVSEGGNGAGRPIRASFGTTKYCNTFLRHVPCNNPECLFLHEVEDDSEGWTREDAIAWQTRMPGSTPGAQVMVGQGGPSGTGRRVAAPIFPPPRWEEPSGGGGGQAYAMPSTTVTAAGNTRQRP------GAARPPANPWNQQ 402
            ++ +  CPLC E +DITD+   PC C Y IC +CW+HI +                            + +++E + R  A R   +++R  + +     DR +   + +++                H T  +                     P+A PPP + ST V  +  L ++RV+QRNL Y++GLPA L +E  L R EYFGQYGK++KV+V+RP  PP+ AS     S Y+T+A +E+A  CIQA+ NFVL         G+ +RA FGTTKYC+ +LR++ C NP+CL+LH+V    + +T+++ I+  TR           V Q   S + RR    + PPP  +          +   + T+      R  P       +  PPA  W Q+
Sbjct:    6 DDGDRTCPLCAEEMDITDQQLKPCKCGYDICVWCWHHIID----------------------------MAEKEETEGRCPACRTRYDKDR--IVKMAATCDRTVAEKNVEKK----------------HKTQKV--------------------KPKAAPPPTTMST-VESKKHLASVRVIQRNLVYIIGLPAHLCNESVLERREYFGQYGKVLKVSVSRPTGPPSQASANSNISVYITYAKEEEAIRCIQAVHNFVL--------EGKVLRACFGTTKYCHAWLRNMTCGNPDCLYLHDVGSQEDSFTKDEIISAYTR---------TRVPQMASSVSQRRTGT-VLPPPGDDFSYSAVVSAKHTFKNGTLNTTNQPRLSPPNSSSGRSTLPPAASWGQR 321          
BLAST of EWM21601.1 vs. NCBI_GenBank
Match: gi|1174550549|gb|OQU78567.1| (hypothetical protein SORBI_3008G001200 [Sorghum bicolor])

HSP 1 Score: 200.29 bits (508), Expect = 2.966e-49
Identity = 115/351 (32.76%), Postives = 174/351 (49.57%), Query Frame = 0
Query:    9 EEEEEHCPLCCETLDITDRNFFPCPCEYQICCYCWNHIKENLNKLCPACRTPYGDDPHIFSPVDKDEIIKKRKEKKARERAERREREREREKLERRERERDRDIGRPDRDRRDTGVGAIAGSSTSTTTHSTSYLLSPSNGLSHPLHHPLSMALPPPQAPPPPPSSSTHVVDRSTLRNIRVVQRNLAYVLGLPASLASEETLRRPEYFGQYGKIVKVAVTRPAVPPA-ASGVPGCSAYVTFAHKEDARACIQALDNFVLPVSEGGNGAGRPIRASFGTTKYCNTFLRHVPCNNPECLFLHEVEDDSEGWTREDAIAWQTRMPGSTPGAQVMVGQGGPSGTGRRVAAPIFPPP 358
            ++ +  CPLC E +DITD+   PC C Y IC +CW+HI +                            + +++E + R  A R   +++R  + +     DR +   + +++                H T  +                     P+A PPP + ST V  +  L ++RV+QRNL Y++GLPA L  E  L R EYFGQYGK++KV+V+RP  PP+ AS     S Y+T+A +E+A  CIQA+ NFVL         G+ +RA FGTTKYC+ +LR++ C NP+CL+LH+V    + +T+++ I+  TR           V Q   S + RR    + PPP
Sbjct:    6 DDGDRTCPLCAEEMDITDQQLKPCKCGYDICVWCWHHIID----------------------------MAEKEETEGRCPACRTRYDKDR--IVKMAATCDRTVAEKNAEKK----------------HKTQKV--------------------KPKAAPPPTAMST-VESKKHLASVRVIQRNLVYIIGLPAHLCHESVLERREYFGQYGKVLKVSVSRPTGPPSQASANSNISVYITYAKEEEAIRCIQAVHNFVL--------EGKVLRACFGTTKYCHAWLRNITCGNPDCLYLHDVGSQEDSFTKDEIISAYTR---------TRVPQMASSVSQRRTGT-VLPPP 271          
BLAST of EWM21601.1 vs. NCBI_GenBank
Match: gi|1205978046|ref|XP_021302337.1| (uncharacterized protein LOC110429916 [Sorghum bicolor] >gi|1205978048|ref|XP_021302338.1| uncharacterized protein LOC110429916 [Sorghum bicolor] >gi|992159872|gb|KXG22747.1| hypothetical protein SORBI_3008G001200 [Sorghum bicolor] >gi|992159873|gb|KXG22748.1| hypothetical protein SORBI_3008G001200 [Sorghum bicolor])

HSP 1 Score: 200.29 bits (508), Expect = 3.098e-49
Identity = 115/351 (32.76%), Postives = 174/351 (49.57%), Query Frame = 0
Query:    9 EEEEEHCPLCCETLDITDRNFFPCPCEYQICCYCWNHIKENLNKLCPACRTPYGDDPHIFSPVDKDEIIKKRKEKKARERAERREREREREKLERRERERDRDIGRPDRDRRDTGVGAIAGSSTSTTTHSTSYLLSPSNGLSHPLHHPLSMALPPPQAPPPPPSSSTHVVDRSTLRNIRVVQRNLAYVLGLPASLASEETLRRPEYFGQYGKIVKVAVTRPAVPPA-ASGVPGCSAYVTFAHKEDARACIQALDNFVLPVSEGGNGAGRPIRASFGTTKYCNTFLRHVPCNNPECLFLHEVEDDSEGWTREDAIAWQTRMPGSTPGAQVMVGQGGPSGTGRRVAAPIFPPP 358
            ++ +  CPLC E +DITD+   PC C Y IC +CW+HI +                            + +++E + R  A R   +++R  + +     DR +   + +++                H T  +                     P+A PPP + ST V  +  L ++RV+QRNL Y++GLPA L  E  L R EYFGQYGK++KV+V+RP  PP+ AS     S Y+T+A +E+A  CIQA+ NFVL         G+ +RA FGTTKYC+ +LR++ C NP+CL+LH+V    + +T+++ I+  TR           V Q   S + RR    + PPP
Sbjct:    6 DDGDRTCPLCAEEMDITDQQLKPCKCGYDICVWCWHHIID----------------------------MAEKEETEGRCPACRTRYDKDR--IVKMAATCDRTVAEKNAEKK----------------HKTQKV--------------------KPKAAPPPTAMST-VESKKHLASVRVIQRNLVYIIGLPAHLCHESVLERREYFGQYGKVLKVSVSRPTGPPSQASANSNISVYITYAKEEEAIRCIQAVHNFVL--------EGKVLRACFGTTKYCHAWLRNITCGNPDCLYLHDVGSQEDSFTKDEIISAYTR---------TRVPQMASSVSQRRTGT-VLPPP 271          
BLAST of EWM21601.1 vs. NCBI_GenBank
Match: gi|901868230|gb|KMZ84609.1| (hypothetical protein PVBG_00389 [Plasmodium vivax Brazil I])

HSP 1 Score: 187.578 bits (475), Expect = 6.087e-45
Identity = 99/312 (31.73%), Postives = 164/312 (52.56%), Query Frame = 0
Query:   15 CPLCCETLDITDRNFFPCPCEYQICCYCWNHIKENLNKLCPACRTPYGDDPHIFSPVDKDEIIKKRKEKKARERAERREREREREKLERRERERDRDIGRPDRDRRDTGVGAIAGSSTST-TTHSTSYLLSPSNGLSHPLHHPLSMALPPPQAPPPPPSSSTHVVDR-----STLRNIRVVQRNLAYVLGLPASLASEETLRRPEYFGQYGKIVKVAVTRP-AVPPAASGVPGCSAYVTFAHKEDARACIQALDNFVLPVSEGGNGAGRPIRASFGTTKYCNTFLRHVPCNNPECLFLHEVEDDSEGWTRED 319
            CPLC E LD TDRNFFPC C YQIC +C  +I++++   CPACR  Y +   I++    ++++KK+K   +       +  +                        + G  A  G S ST  ++ST    SPS   S  LHH    +      P    S++T+ +         ++ IRVVQRNL +V+G+ ++ A +  L++ EYFG+YG+I+ + V +  A  P  +G P  SAY+T++++++A   I  +D  VL          + ++ASFGTTKYC  +L++  C N +C +LH++ +  + ++++D
Sbjct:  198 CPLCVEVLDETDRNFFPCDCGYQICLWCLYYIRDHMCNKCPACRRSYDEKNFIYNRETHEKLVKKQKSGHSHGHNHNHKGSK---------------ADASSSSNNNVGASAPNGVSGSTGVSNSTGANASPSAANSSLLHHLSGSSSAIFNKPELYKSANTYNIHEHENLFEIIKGIRVVQRNLVFVIGITSNYAKKNILKKNEYFGKYGQILNIIVNKSQAYNPHYNG-PSFSAYITYSNEKEAINAIYFIDGMVLD--------SKTLKASFGTTKYCAAYLKNSTCTNEDCFYLHQLGNVIDSFSKDD 485          
BLAST of EWM21601.1 vs. NCBI_GenBank
Match: gi|901858305|gb|KMZ77447.1| (hypothetical protein PVIIG_01417 [Plasmodium vivax India VII])

HSP 1 Score: 187.193 bits (474), Expect = 8.572e-45
Identity = 99/312 (31.73%), Postives = 164/312 (52.56%), Query Frame = 0
Query:   15 CPLCCETLDITDRNFFPCPCEYQICCYCWNHIKENLNKLCPACRTPYGDDPHIFSPVDKDEIIKKRKEKKARERAERREREREREKLERRERERDRDIGRPDRDRRDTGVGAIAGSSTST-TTHSTSYLLSPSNGLSHPLHHPLSMALPPPQAPPPPPSSSTHVVDR-----STLRNIRVVQRNLAYVLGLPASLASEETLRRPEYFGQYGKIVKVAVTRP-AVPPAASGVPGCSAYVTFAHKEDARACIQALDNFVLPVSEGGNGAGRPIRASFGTTKYCNTFLRHVPCNNPECLFLHEVEDDSEGWTRED 319
            CPLC E LD TDRNFFPC C YQIC +C  +I++++   CPACR  Y +   I++    ++++KK+K   +       +  +                        + G  A  G S ST  ++ST    SPS   S  LHH    +      P    S++T+ +         ++ IRVVQRNL +V+G+ ++ A +  L++ EYFG+YG+I+ + V +  A  P  +G P  SAY+T++++++A   I  +D  VL          + ++ASFGTTKYC  +L++  C N +C +LH++ +  + ++++D
Sbjct:  198 CPLCVEVLDETDRNFFPCDCGYQICLWCLYYIRDHMCNKCPACRRSYDEKNFIYNRETHEKLVKKQKSGHSHGHNHNHKGSK---------------ADASSSSNNNVGASAPNGVSGSTGVSNSTGANASPSAANSSLLHHLSGSSSAIFNKPELYKSANTYNIHEHENLFEIIKGIRVVQRNLVFVIGITSNYAKKNILKKNEYFGKYGQILNIIVNKSQAYNPHYNG-PSFSAYITYSNEKEAINAIYFIDGMVLD--------SKTLKASFGTTKYCAAYLKNSTCTNEDCFYLHQLGNVIDSFSKDD 485          
BLAST of EWM21601.1 vs. NCBI_GenBank
Match: gi|156095709|ref|XP_001613889.1| (hypothetical protein [Plasmodium vivax Sal-1] >gi|148802763|gb|EDL44162.1| hypothetical protein, conserved [Plasmodium vivax])

HSP 1 Score: 186.422 bits (472), Expect = 1.497e-44
Identity = 99/312 (31.73%), Postives = 164/312 (52.56%), Query Frame = 0
Query:   15 CPLCCETLDITDRNFFPCPCEYQICCYCWNHIKENLNKLCPACRTPYGDDPHIFSPVDKDEIIKKRKEKKARERAERREREREREKLERRERERDRDIGRPDRDRRDTGVGAIAGSSTST-TTHSTSYLLSPSNGLSHPLHHPLSMALPPPQAPPPPPSSSTHVVDR-----STLRNIRVVQRNLAYVLGLPASLASEETLRRPEYFGQYGKIVKVAVTRP-AVPPAASGVPGCSAYVTFAHKEDARACIQALDNFVLPVSEGGNGAGRPIRASFGTTKYCNTFLRHVPCNNPECLFLHEVEDDSEGWTRED 319
            CPLC E LD TDRNFFPC C YQIC +C  +I++++   CPACR  Y +   I++    ++++KK+K   +     +  +                          + G  A  G S ST  ++ST    SPS   S  LHH    +      P    S++T+ +         ++ IRVVQRNL +V+G+ ++ A +  L++ EYFG+YG+I+ + V +  A  P  +G P  SAY+T++++++A   I  +D  VL          + ++ASFGTTKYC  +L++  C N +C +LH++ +  + ++++D
Sbjct:  198 CPLCVEVLDETDRNFFPCDCGYQICLWCLYYIRDHMCNKCPACRRSYDEKNFIYNRETHEKLVKKQKSGHSHGHNHKGSK-----------------ADASSSSNNNVGASAPNGVSGSTGVSNSTGANASPSAANSSLLHHLSGSSSAIFNKPELYKSANTYNIHEHENLFEIIKGIRVVQRNLVFVIGITSNYAKKNILKKNEYFGKYGQILNIIVNKSQAYNPHYNG-PSFSAYITYSNEKEAINAIYFIDGMVLD--------SKTLKASFGTTKYCAAYLKNSTCTNEDCFYLHQLGNVIDSFSKDD 483          
BLAST of EWM21601.1 vs. NCBI_GenBank
Match: gi|1074125592|emb|SCO75600.1| (CCR4-NOT transcription complex subunit 4, putative [Plasmodium vivax])

HSP 1 Score: 186.422 bits (472), Expect = 1.563e-44
Identity = 98/312 (31.41%), Postives = 164/312 (52.56%), Query Frame = 0
Query:   15 CPLCCETLDITDRNFFPCPCEYQICCYCWNHIKENLNKLCPACRTPYGDDPHIFSPVDKDEIIKKRKEKKARERAERREREREREKLERRERERDRDIGRPDRDRRDTGVGAIAGSSTST-TTHSTSYLLSPSNGLSHPLHHPLSMALPPPQAPPPPPSSSTHVVDR-----STLRNIRVVQRNLAYVLGLPASLASEETLRRPEYFGQYGKIVKVAVTRP-AVPPAASGVPGCSAYVTFAHKEDARACIQALDNFVLPVSEGGNGAGRPIRASFGTTKYCNTFLRHVPCNNPECLFLHEVEDDSEGWTRED 319
            CPLC E LD TDRNFFPC C YQIC +C  +I++++   CPACR  Y +   I++    ++++KK+K   +       +  +                        + G  A  G S ST  ++ST    SPS   S  LHH    +      P    +++T+ +         ++ IRVVQRNL +V+G+ ++ A +  L++ EYFG+YG+I+ + V +  A  P  +G P  SAY+T++++++A   I  +D  VL          + ++ASFGTTKYC  +L++  C N +C +LH++ +  + ++++D
Sbjct:  169 CPLCVEVLDETDRNFFPCDCGYQICLWCLYYIRDHMCNKCPACRRSYDEKNFIYNRETHEKLVKKQKSGHSHGHNHNHKGSK---------------ADASSSSNNNVGASAPNGVSGSTGVSNSTGANASPSAANSSLLHHLSGSSSAIFNKPELYKNANTYNIHEHENLFEIIKGIRVVQRNLVFVIGITSNYAKKNILKKNEYFGKYGQILNIIVNKSQAYNPHYNG-PSFSAYITYSNEKEAINAIYFIDGMVLD--------SKTLKASFGTTKYCAAYLKNSTCTNEDCFYLHQLGNVIDSFSKDD 456          
The following BLAST results are available for this feature:
BLAST of EWM21601.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101856|gb|EWM21601.1|0.000e+0100.00ccr4-not transcription complex subunit [Nannochlor... [more]
gi|1210517815|dbj|GAX23216.1|3.355e-7339.63CCR4-NOT transcription complex subunit 4 [Fistulif... [more]
gi|1210530867|dbj|GAX10407.1|1.995e-7141.48CCR4-NOT transcription complex subunit 4 [Fistulif... [more]
gi|1205960150|ref|XP_021317280.1|2.741e-4930.67uncharacterized protein LOC8059223 isoform X2 [Sor... [more]
gi|1174550549|gb|OQU78567.1|2.966e-4932.76hypothetical protein SORBI_3008G001200 [Sorghum bi... [more]
gi|1205978046|ref|XP_021302337.1|3.098e-4932.76uncharacterized protein LOC110429916 [Sorghum bico... [more]
gi|901868230|gb|KMZ84609.1|6.087e-4531.73hypothetical protein PVBG_00389 [Plasmodium vivax ... [more]
gi|901858305|gb|KMZ77447.1|8.572e-4531.73hypothetical protein PVIIG_01417 [Plasmodium vivax... [more]
gi|156095709|ref|XP_001613889.1|1.497e-4431.73hypothetical protein [Plasmodium vivax Sal-1] >gi|... [more]
gi|1074125592|emb|SCO75600.1|1.563e-4431.41CCR4-NOT transcription complex subunit 4, putative... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9104rna9104Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications