EWM21616.1, cds9064 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21616.1 vs. NCBI_GenBank
Match: gi|585101872|gb|EWM21617.1| (methionine adenosyltransferase 2 subunit beta [Nannochloropsis gaditana]) HSP 1 Score: 658.292 bits (1697), Expect = 0.000e+0 Identity = 327/327 (100.00%), Postives = 327/327 (100.00%), Query Frame = 0
Query: 1 MSSPAACARNPEKAMRVNCPLALLDALALHSPEALLVFFSTDQVFSGTVSPPALYSEAGESGRREEEEPVNVYGRSKRAFERAIQVRPDRTFTRHSSSPRVYVAAALSLSISSSPPPVDLAVPQDRWPRHLILRSSNIIGPPSPFLRQGKFLQWLDELLETSVGPLELFDDECRSFLYLQDVLSLLCALLDSYRPSRPLEGPTAGGNVGRGEPILGAREGEDAKDASSLQRASLPASARLLVGTYNMGGPDALTRVDLGRLVWRARGGERGDCSGRIVPVRRASLNLNFEAPLNIGMDSGKLRQDAGRLAFPGTSMEIAIPEILSQK 327
MSSPAACARNPEKAMRVNCPLALLDALALHSPEALLVFFSTDQVFSGTVSPPALYSEAGESGRREEEEPVNVYGRSKRAFERAIQVRPDRTFTRHSSSPRVYVAAALSLSISSSPPPVDLAVPQDRWPRHLILRSSNIIGPPSPFLRQGKFLQWLDELLETSVGPLELFDDECRSFLYLQDVLSLLCALLDSYRPSRPLEGPTAGGNVGRGEPILGAREGEDAKDASSLQRASLPASARLLVGTYNMGGPDALTRVDLGRLVWRARGGERGDCSGRIVPVRRASLNLNFEAPLNIGMDSGKLRQDAGRLAFPGTSMEIAIPEILSQK
Sbjct: 104 MSSPAACARNPEKAMRVNCPLALLDALALHSPEALLVFFSTDQVFSGTVSPPALYSEAGESGRREEEEPVNVYGRSKRAFERAIQVRPDRTFTRHSSSPRVYVAAALSLSISSSPPPVDLAVPQDRWPRHLILRSSNIIGPPSPFLRQGKFLQWLDELLETSVGPLELFDDECRSFLYLQDVLSLLCALLDSYRPSRPLEGPTAGGNVGRGEPILGAREGEDAKDASSLQRASLPASARLLVGTYNMGGPDALTRVDLGRLVWRARGGERGDCSGRIVPVRRASLNLNFEAPLNIGMDSGKLRQDAGRLAFPGTSMEIAIPEILSQK 430
BLAST of EWM21616.1 vs. NCBI_GenBank
Match: gi|585101871|gb|EWM21616.1| (methionine adenosyltransferase 2 subunit beta [Nannochloropsis gaditana]) HSP 1 Score: 654.055 bits (1686), Expect = 0.000e+0 Identity = 327/327 (100.00%), Postives = 327/327 (100.00%), Query Frame = 0
Query: 1 MSSPAACARNPEKAMRVNCPLALLDALALHSPEALLVFFSTDQVFSGTVSPPALYSEAGESGRREEEEPVNVYGRSKRAFERAIQVRPDRTFTRHSSSPRVYVAAALSLSISSSPPPVDLAVPQDRWPRHLILRSSNIIGPPSPFLRQGKFLQWLDELLETSVGPLELFDDECRSFLYLQDVLSLLCALLDSYRPSRPLEGPTAGGNVGRGEPILGAREGEDAKDASSLQRASLPASARLLVGTYNMGGPDALTRVDLGRLVWRARGGERGDCSGRIVPVRRASLNLNFEAPLNIGMDSGKLRQDAGRLAFPGTSMEIAIPEILSQK 327
MSSPAACARNPEKAMRVNCPLALLDALALHSPEALLVFFSTDQVFSGTVSPPALYSEAGESGRREEEEPVNVYGRSKRAFERAIQVRPDRTFTRHSSSPRVYVAAALSLSISSSPPPVDLAVPQDRWPRHLILRSSNIIGPPSPFLRQGKFLQWLDELLETSVGPLELFDDECRSFLYLQDVLSLLCALLDSYRPSRPLEGPTAGGNVGRGEPILGAREGEDAKDASSLQRASLPASARLLVGTYNMGGPDALTRVDLGRLVWRARGGERGDCSGRIVPVRRASLNLNFEAPLNIGMDSGKLRQDAGRLAFPGTSMEIAIPEILSQK
Sbjct: 1 MSSPAACARNPEKAMRVNCPLALLDALALHSPEALLVFFSTDQVFSGTVSPPALYSEAGESGRREEEEPVNVYGRSKRAFERAIQVRPDRTFTRHSSSPRVYVAAALSLSISSSPPPVDLAVPQDRWPRHLILRSSNIIGPPSPFLRQGKFLQWLDELLETSVGPLELFDDECRSFLYLQDVLSLLCALLDSYRPSRPLEGPTAGGNVGRGEPILGAREGEDAKDASSLQRASLPASARLLVGTYNMGGPDALTRVDLGRLVWRARGGERGDCSGRIVPVRRASLNLNFEAPLNIGMDSGKLRQDAGRLAFPGTSMEIAIPEILSQK 327
BLAST of EWM21616.1 vs. NCBI_GenBank
Match: gi|551645161|ref|XP_005825370.1| (hypothetical protein GUITHDRAFT_115530 [Guillardia theta CCMP2712] >gi|428169456|gb|EKX38390.1| hypothetical protein GUITHDRAFT_115530 [Guillardia theta CCMP2712]) HSP 1 Score: 130.183 bits (326), Expect = 1.218e-31 Identity = 104/306 (33.99%), Postives = 136/306 (44.44%), Query Frame = 0
Query: 1 MSSPAACARNPEKAMRVNCPLALLDALALHSPEALLVFFSTDQVFSGTVSPPALYSEAGESGRREEEEPVNVYGRSKRAFERAIQVRPDRTFTRHSSSPRVYVAAALSLSISSSPPPVDLAVPQDRWPRHLILRSSNIIG--PPSPFLRQGKFLQWLDELL--ETSVGPLELFDDECRSFLYLQDVLSLLCALLDSYRPSRPLEGPTAGGNVGRGEPILGAREGEDAKDASSLQRASLPASARLLVGTYNMGGPDALTRVDLGRLVWRARGGERGDCSGRIVPVRRASLNLNFEAPLNIGMDSGKL 302
MS+PAAC + E+A +N P ALLDAL +AL V STDQ+F G +Y E ++ PVN YG++K FE+ ++ DRWP H+ILRSS I G PP +R G FLQ+LDE L T+ P+ LF DE R +Y+ DV+++L IL A+E A L T +MGGP+ L+RV +G +V RG S RI VRRA L L F +PL+I M S KL
Sbjct: 88 MSAPAACEKQQEEAEAINVPTALLDALLQVKSDALFVQVSTDQIFDGQ---HPVYDEESDA------LPVNQYGKTKLRFEQVLR---------------------------------------DRWPNHVILRSSLIYGPNPPRECVRTGSFLQFLDESLAKATAEQPVSLFGDEVRCPIYVNDVVAILLVF------------------------ILHAKECMSAP----------------LTRTLSMGGPERLSRVAMGEIV----SSIRGYSSDRIKSVRRAELQLGFTSPLDISMRSDKL 301
BLAST of EWM21616.1 vs. NCBI_GenBank
Match: gi|545354912|ref|XP_005643283.1| (methionine adenosyltransferase regulatory beta subunit-related [Coccomyxa subellipsoidea C-169] >gi|384245244|gb|EIE18739.1| methionine adenosyltransferase regulatory beta subunit-related [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 100.523 bits (249), Expect = 9.835e-21 Identity = 93/314 (29.62%), Postives = 131/314 (41.72%), Query Frame = 0
Query: 1 MSSPAACARNPEKAMRVNCPLALLDALALHSPEA----LLVFFSTDQVFSGTVSPPALYSEAGESGRREEE--EPVNVYGRSKRAFERAIQVRPDRTFTRHSSSPRVYVAAALSLSISSSPPPVDLAVPQDRWPRHLILRSSNIIGPPSPF-LRQGKFLQWLDELLETSVGPLELFDDECRSFLYLQDVLSLLCALLDSYRPSRPLEGPTAGGNVGRGEPILGAREGEDAKDASSLQRASLPASARLLVGTYNMGGPDALTRVDLGRLVWRARGGERGDCSGRIVPVRRASLNLNFEAPLNIGMDSGKLRQDAG 307
+SSP AC ++P+ A VN P LLDAL++H+ E L + STDQV+ G+ S REEE PVN YG++K E+ I Q+RWP +ILRSS I GP SP + + FLQ++ L+ P F+DE R+ +++ D++S++ LL +P L GR IL YNMGGP+ L+RVD+ V G IV +S+N +P +I M S KL + G
Sbjct: 81 ISSPGACEKDPDTARAVNVPSKLLDALSVHAGEHGSHPLFIHLSTDQVYDGS-----------RSNWREEEAGNPVNAYGKTKLEAEKLI---------------------------------------QERWPNCVILRSSIIYGPQSPTPVSRALFLQFVARQLKEGT-PTSFFNDEFRNPVFVDDIVSVVLRLL---QPGTVLS--------GRWACIL----------------------------VYNMGGPERLSRVDMAAKVAEVWGYS----PDAIVSAPSSSVNRGVASPADISMTSRKLETELG 300
BLAST of EWM21616.1 vs. NCBI_GenBank
Match: gi|551584921|ref|XP_005777782.1| (hypothetical protein EMIHUDRAFT_115555 [Emiliania huxleyi CCMP1516] >gi|485630075|gb|EOD25353.1| hypothetical protein EMIHUDRAFT_115555 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 92.4337 bits (228), Expect = 1.369e-17 Identity = 97/312 (31.09%), Postives = 131/312 (41.99%), Query Frame = 0
Query: 1 MSSPAACARNPEKAMRVN-CPLALLDALALHSPEALLVFFSTDQVFSGTVSPPALYSEAGESGRREEEEPVNVYGRSKRAFERAIQVRPDRTFTRHSSSPRVYVAAALSLSISSSPPPVDLAVPQDRWPRHLILRSSNIIGPPSPFLRQGKFLQWLDELLETSVGPLELFDDECRSFLYLQDVLSLLCALLDSYRPSRPLEGPTAGGNVGRGEPILGAREGEDAKDASSLQRASLPASARLLVGTYNMGGPDALTRVDLGRLVWRARGGERGDCSGRIVPVRRASL---NLNFEAPLNIGMDSGKLRQDAGR 308
+SSPA C R+P +A VN CP LL A+ H A VF STDQV+ G +P Y+E + PVNVYG+SK +FERA+ A+P R + LRSS I+GPP+P + K D + P D + RS +++ D++S+L +L A+D S Q A G YNMGGP+ +TRV++ V A+GG D I PV R+SL +P +I MDS KLR G
Sbjct: 111 ISSPAVCERDPARARAVNECP-PLLAAVPAH---ACFVFLSTDQVYDGLAAP---YTETSAAA------PVNVYGQSKLSFERALTA----------------------------------ALPS----RSVCLRSSLILGPPTPGRHRYKQPTGTDHRVSFRSSPSS--DAQVRSVVWVGDIVSILASL---------------------------------ARDGVSPQSA----------GVYNMGGPERVTRVEVAEAV-AAQGGY--DAPQLIRPVARSSLPPAARAVASPPDISMDSTKLRSLTGH 323
BLAST of EWM21616.1 vs. NCBI_GenBank
Match: gi|397575899|gb|EJK49954.1| (hypothetical protein THAOC_31118 [Thalassiosira oceanica]) HSP 1 Score: 84.3445 bits (207), Expect = 8.779e-15 Identity = 67/196 (34.18%), Postives = 99/196 (50.51%), Query Frame = 0
Query: 1 MSSPAACARNPEKAMRVNCPLALLDALALHSPEALLVFFSTDQVFSGTVSPPALYSEAGESGRREEEEPVNVYGRSKRAFERAIQVRPDRTFTRHSSSPRVYVAAALSLSISSSPPPVDLAVPQDRWPRHLILRSSNIIGPPSPFLRQG------KFLQWLDELLETSVGPLELFDDECRSFLYLQDVLSLLCALL 190
+SSP C +P+ A ++NCP+ LL S +A +++ STDQV+ G S YSE+ + PVNVYGR+K AFER + +R SSP + V A + A+ P + LRSS I+GPP P LR G F+Q++ LE S P + +E RS ++++DV+ + L
Sbjct: 107 LSSPTHCENHPDDAWKINCPVDLL------SFKAPIIYLSTDQVYEGLKS---FYSES------DRTVPVNVYGRTKLAFERVL-LRDG-----GDSSPLLSVDEA-----REDTERIPRAIEHTAAPNSVCLRSSLILGPPVP-LRNGCRKGFDTFIQFISSRLE-SAAPTVYYTNEYRSVVHIKDVVRAILHFL 274
BLAST of EWM21616.1 vs. NCBI_GenBank
Match: gi|223999833|ref|XP_002289589.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974797|gb|EED93126.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 84.7297 bits (208), Expect = 9.713e-15 Identity = 65/190 (34.21%), Postives = 101/190 (53.16%), Query Frame = 0
Query: 1 MSSPAACARNPEKAMRVNCPLALLDALALHSPEALLVFFSTDQVFSGTVSPPALYSEAGESGRREEEEPVNVYGRSKRAFERAIQVRPDRTFTRHSSSPRVYVAAALSLSISSSPPPVDLAVPQDRWPRH--LILRSSNIIGPPSPF---LRQG--KFLQWLDELLETSVGPLELFDDECRSFLYLQDVL 183
+SSP C + E+A ++NCP+ LL S +A +++ STDQV+ GT Y G +E PVNVYGR+K AFER + SS + A L S+ P + + + P + +ILRSS I+G P+PF R+G FLQ++++ L+ + + F +E RS ++L+DV+
Sbjct: 125 LSSPFYCESHAEEAWKINCPVELL------SLKAPIMYMSTDQVYEGT---KQFY------GENDETVPVNVYGRTKLAFERIL-------LGGLGSST---LLTAKELGSSTLPEFLTNVISNNLRPHNKSVILRSSLILGKPTPFPNGCRKGFPSFLQFIEDRLKNQIST-DYFVNEYRSVVHLEDVI 288
BLAST of EWM21616.1 vs. NCBI_GenBank
Match: gi|223998907|ref|XP_002289126.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974334|gb|EED92663.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 82.8037 bits (203), Expect = 3.002e-14 Identity = 64/190 (33.68%), Postives = 102/190 (53.68%), Query Frame = 0
Query: 1 MSSPAACARNPEKAMRVNCPLALLDALALHSPEALLVFFSTDQVFSGTVSPPALYSEAGESGRREEEEPVNVYGRSKRAFERAIQVRPDRTFTRHSSSPRVYVAAALSLSISSSPPPVDLAVPQDRWPRH--LILRSSNIIGPPSPF---LRQG--KFLQWLDELLETSVGPLELFDDECRSFLYLQDVL 183
+SSP C + E+A ++NCP+ LL S +A +++ STDQV+ GT Y G +E PVN+YGR+K AFER I V + T + A L + + P + + + P + +ILRSS I+G P+PF R+G FLQ++++ L+ + + F +E RS ++L+DV+
Sbjct: 125 LSSPFYCESHAEEAWKINCPVELL------SLKAPIMYMSTDQVYEGT---KQFY------GENDETVPVNMYGRTKLAFER-ILVGGLGSST---------LLTAKELGLCTLPEFLTNVISNNLRPHNKSVILRSSLILGKPTPFPNGCRKGFPSFLQFIEDRLKNQIST-DYFVNEYRSVVHLEDVI 288
BLAST of EWM21616.1 vs. NCBI_GenBank
Match: gi|676399043|ref|XP_009042799.1| (hypothetical protein AURANDRAFT_72848 [Aureococcus anophagefferens] >gi|323446280|gb|EGB02502.1| hypothetical protein AURANDRAFT_72848 [Aureococcus anophagefferens]) HSP 1 Score: 82.0333 bits (201), Expect = 1.624e-13 Identity = 84/279 (30.11%), Postives = 111/279 (39.78%), Query Frame = 0
Query: 1 MSSPAACARNPEKAMRVNCPLALLDALALHSPEALLVFFSTDQVFSGTVSPPA-LYSEAGESGRREEEEPVNV-----YGRSKRAFERAIQVRPDRTFTRHSSSPRVYVAAALSLSISSSPPPVDLAVPQDRWPRHLILRSSNIIGPPSPFLRQGKFLQWLDELLETSVGPLELFDDECRSFLYLQDVLSLLCALLDSYRPSR-PLEGPTAGGNVGRGE-PILGAREGEDAKDASSLQRASLPASARLLVGTYNMGGPDALTRVDLGRLVWRARGGERG 271
++SPAAC + +A NCPL L+ L P+ALLV STD V +G A Y + G S R YGR+K AFE A+ W R ++ R SN++G P+PF GKF QW+ L P+ L+ DE R+F+ ++ V + A Y SR P + A P AR A RA PA + N GGPD L+R LGR V G + G
Sbjct: 173 LASPAACEADEARAAATNCPLGFLECLHACCPDALLVHCSTDLVLAGVDDDGAPAYGDGGASAPRAAALAAAARPATAYGRTKLAFEAALAAG---------------------------------------WQRAVVFRLSNVVGAPAPFTGDGKFAQWVAGELRRG-EPVTLWSDEARNFVDVRQVCDGVAAAARLYGVSRQPCDASDARALAAAAHSPAETARFHAKA-------RALHPA----VFLHVNCGGPDCLSRYALGRAVANTLGLDAG 400
BLAST of EWM21616.1 vs. NCBI_GenBank
Match: gi|695464120|ref|XP_009538875.1| (hypothetical protein PHYSODRAFT_532795 [Phytophthora sojae] >gi|348666186|gb|EGZ06014.1| hypothetical protein PHYSODRAFT_532795 [Phytophthora sojae]) HSP 1 Score: 80.1073 bits (196), Expect = 2.857e-13 Identity = 84/313 (26.84%), Postives = 134/313 (42.81%), Query Frame = 0
Query: 1 MSSPAACARNPEKAMRVNCPLALLDALALHSPEALLVFFSTDQVFSGTVSPPALYSEAGESGRREEEEPVNVYGRSKRAFERAIQVRPDRTFTRHSSSPRVYVAAALSLSISSSPPPVDLAVPQDRWPRHLILRSSNIIGPPSPFLRQG---KFLQWLDELL---ETSVGPLELFDDECRSFLYLQDVLSLLCALLDSYRPSRPLEGPTAGGNVGRGEPILGAREGEDAKDASSLQRASLPASARLLVGTYNMGGPDALTRVDLGRLVWRARGGER-----GDCSGRIVPVRRASLNLNFEAPLNIGMDSGKL 302
+SSPA C ++P KA + LL+ L + V FSTD V+ GT + + E+ E ++VYG SK F++ + + H S+ + L+LR +N++GP +P KF+QWL + L ET+ PL+L+ DE RS+LY+ D++S+L LL A +A+ ASA L+ N+GG +AL+RV+L R + A G + + I P RA ++L + +PLN + + +L
Sbjct: 101 ISSPAVCQKDPNKACAPRGVVNLLEKLPWRTR---FVHFSTDFVYEGTQA----WGESYEEDAAVSSSKLSVYGASKLRFDQFL-------LSGHWSANFEF----------------------------LVLRIANVVGPVAPVFPNKSAPKFMQWLHQQLFQPETADVPLKLWSDEFRSYLYIHDLVSILFKLL--------------------------------ATNAN--------ASATLV----NLGGLEALSRVELARR-YIAAGAKHHVSAVATVTRAIEPTARARVDLGYPSPLNTKLSTARL 326 The following BLAST results are available for this feature:
BLAST of EWM21616.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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