EWM21616.1, cds9064 (CDS) Nannochloropsis gaditana

Overview
NameEWM21616.1
Unique Namecds9064
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:319641..319697 -
Alignment locationKK037251.1:319137..319559 -
Alignment locationKK037251.1:318650..319060 -
Alignment locationKK037251.1:318433..318525 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21616.1
Productmethionine adenosyltransferase 2 subunit beta
Orig transcript idgnl|cribi|Naga_100012g46.1948.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:319641..319697 -
KK037251.1supercontigKK037251.1:319137..319559 -
KK037251.1supercontigKK037251.1:318650..319060 -
KK037251.1supercontigKK037251.1:318433..318525 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR005913dTDP_dehydrorham_reduct
IPR016040NAD(P)-bd_dom
IPR029903RmlD-like-bd
Homology
BLAST of EWM21616.1 vs. NCBI_GenBank
Match: gi|585101872|gb|EWM21617.1| (methionine adenosyltransferase 2 subunit beta [Nannochloropsis gaditana])

HSP 1 Score: 658.292 bits (1697), Expect = 0.000e+0
Identity = 327/327 (100.00%), Postives = 327/327 (100.00%), Query Frame = 0
Query:    1 MSSPAACARNPEKAMRVNCPLALLDALALHSPEALLVFFSTDQVFSGTVSPPALYSEAGESGRREEEEPVNVYGRSKRAFERAIQVRPDRTFTRHSSSPRVYVAAALSLSISSSPPPVDLAVPQDRWPRHLILRSSNIIGPPSPFLRQGKFLQWLDELLETSVGPLELFDDECRSFLYLQDVLSLLCALLDSYRPSRPLEGPTAGGNVGRGEPILGAREGEDAKDASSLQRASLPASARLLVGTYNMGGPDALTRVDLGRLVWRARGGERGDCSGRIVPVRRASLNLNFEAPLNIGMDSGKLRQDAGRLAFPGTSMEIAIPEILSQK 327
            MSSPAACARNPEKAMRVNCPLALLDALALHSPEALLVFFSTDQVFSGTVSPPALYSEAGESGRREEEEPVNVYGRSKRAFERAIQVRPDRTFTRHSSSPRVYVAAALSLSISSSPPPVDLAVPQDRWPRHLILRSSNIIGPPSPFLRQGKFLQWLDELLETSVGPLELFDDECRSFLYLQDVLSLLCALLDSYRPSRPLEGPTAGGNVGRGEPILGAREGEDAKDASSLQRASLPASARLLVGTYNMGGPDALTRVDLGRLVWRARGGERGDCSGRIVPVRRASLNLNFEAPLNIGMDSGKLRQDAGRLAFPGTSMEIAIPEILSQK
Sbjct:  104 MSSPAACARNPEKAMRVNCPLALLDALALHSPEALLVFFSTDQVFSGTVSPPALYSEAGESGRREEEEPVNVYGRSKRAFERAIQVRPDRTFTRHSSSPRVYVAAALSLSISSSPPPVDLAVPQDRWPRHLILRSSNIIGPPSPFLRQGKFLQWLDELLETSVGPLELFDDECRSFLYLQDVLSLLCALLDSYRPSRPLEGPTAGGNVGRGEPILGAREGEDAKDASSLQRASLPASARLLVGTYNMGGPDALTRVDLGRLVWRARGGERGDCSGRIVPVRRASLNLNFEAPLNIGMDSGKLRQDAGRLAFPGTSMEIAIPEILSQK 430          
BLAST of EWM21616.1 vs. NCBI_GenBank
Match: gi|585101871|gb|EWM21616.1| (methionine adenosyltransferase 2 subunit beta [Nannochloropsis gaditana])

HSP 1 Score: 654.055 bits (1686), Expect = 0.000e+0
Identity = 327/327 (100.00%), Postives = 327/327 (100.00%), Query Frame = 0
Query:    1 MSSPAACARNPEKAMRVNCPLALLDALALHSPEALLVFFSTDQVFSGTVSPPALYSEAGESGRREEEEPVNVYGRSKRAFERAIQVRPDRTFTRHSSSPRVYVAAALSLSISSSPPPVDLAVPQDRWPRHLILRSSNIIGPPSPFLRQGKFLQWLDELLETSVGPLELFDDECRSFLYLQDVLSLLCALLDSYRPSRPLEGPTAGGNVGRGEPILGAREGEDAKDASSLQRASLPASARLLVGTYNMGGPDALTRVDLGRLVWRARGGERGDCSGRIVPVRRASLNLNFEAPLNIGMDSGKLRQDAGRLAFPGTSMEIAIPEILSQK 327
            MSSPAACARNPEKAMRVNCPLALLDALALHSPEALLVFFSTDQVFSGTVSPPALYSEAGESGRREEEEPVNVYGRSKRAFERAIQVRPDRTFTRHSSSPRVYVAAALSLSISSSPPPVDLAVPQDRWPRHLILRSSNIIGPPSPFLRQGKFLQWLDELLETSVGPLELFDDECRSFLYLQDVLSLLCALLDSYRPSRPLEGPTAGGNVGRGEPILGAREGEDAKDASSLQRASLPASARLLVGTYNMGGPDALTRVDLGRLVWRARGGERGDCSGRIVPVRRASLNLNFEAPLNIGMDSGKLRQDAGRLAFPGTSMEIAIPEILSQK
Sbjct:    1 MSSPAACARNPEKAMRVNCPLALLDALALHSPEALLVFFSTDQVFSGTVSPPALYSEAGESGRREEEEPVNVYGRSKRAFERAIQVRPDRTFTRHSSSPRVYVAAALSLSISSSPPPVDLAVPQDRWPRHLILRSSNIIGPPSPFLRQGKFLQWLDELLETSVGPLELFDDECRSFLYLQDVLSLLCALLDSYRPSRPLEGPTAGGNVGRGEPILGAREGEDAKDASSLQRASLPASARLLVGTYNMGGPDALTRVDLGRLVWRARGGERGDCSGRIVPVRRASLNLNFEAPLNIGMDSGKLRQDAGRLAFPGTSMEIAIPEILSQK 327          
BLAST of EWM21616.1 vs. NCBI_GenBank
Match: gi|551645161|ref|XP_005825370.1| (hypothetical protein GUITHDRAFT_115530 [Guillardia theta CCMP2712] >gi|428169456|gb|EKX38390.1| hypothetical protein GUITHDRAFT_115530 [Guillardia theta CCMP2712])

HSP 1 Score: 130.183 bits (326), Expect = 1.218e-31
Identity = 104/306 (33.99%), Postives = 136/306 (44.44%), Query Frame = 0
Query:    1 MSSPAACARNPEKAMRVNCPLALLDALALHSPEALLVFFSTDQVFSGTVSPPALYSEAGESGRREEEEPVNVYGRSKRAFERAIQVRPDRTFTRHSSSPRVYVAAALSLSISSSPPPVDLAVPQDRWPRHLILRSSNIIG--PPSPFLRQGKFLQWLDELL--ETSVGPLELFDDECRSFLYLQDVLSLLCALLDSYRPSRPLEGPTAGGNVGRGEPILGAREGEDAKDASSLQRASLPASARLLVGTYNMGGPDALTRVDLGRLVWRARGGERGDCSGRIVPVRRASLNLNFEAPLNIGMDSGKL 302
            MS+PAAC +  E+A  +N P ALLDAL     +AL V  STDQ+F G      +Y E  ++       PVN YG++K  FE+ ++                                       DRWP H+ILRSS I G  PP   +R G FLQ+LDE L   T+  P+ LF DE R  +Y+ DV+++L                           IL A+E   A                 L  T +MGGP+ L+RV +G +V       RG  S RI  VRRA L L F +PL+I M S KL
Sbjct:   88 MSAPAACEKQQEEAEAINVPTALLDALLQVKSDALFVQVSTDQIFDGQ---HPVYDEESDA------LPVNQYGKTKLRFEQVLR---------------------------------------DRWPNHVILRSSLIYGPNPPRECVRTGSFLQFLDESLAKATAEQPVSLFGDEVRCPIYVNDVVAILLVF------------------------ILHAKECMSAP----------------LTRTLSMGGPERLSRVAMGEIV----SSIRGYSSDRIKSVRRAELQLGFTSPLDISMRSDKL 301          
BLAST of EWM21616.1 vs. NCBI_GenBank
Match: gi|545354912|ref|XP_005643283.1| (methionine adenosyltransferase regulatory beta subunit-related [Coccomyxa subellipsoidea C-169] >gi|384245244|gb|EIE18739.1| methionine adenosyltransferase regulatory beta subunit-related [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 100.523 bits (249), Expect = 9.835e-21
Identity = 93/314 (29.62%), Postives = 131/314 (41.72%), Query Frame = 0
Query:    1 MSSPAACARNPEKAMRVNCPLALLDALALHSPEA----LLVFFSTDQVFSGTVSPPALYSEAGESGRREEE--EPVNVYGRSKRAFERAIQVRPDRTFTRHSSSPRVYVAAALSLSISSSPPPVDLAVPQDRWPRHLILRSSNIIGPPSPF-LRQGKFLQWLDELLETSVGPLELFDDECRSFLYLQDVLSLLCALLDSYRPSRPLEGPTAGGNVGRGEPILGAREGEDAKDASSLQRASLPASARLLVGTYNMGGPDALTRVDLGRLVWRARGGERGDCSGRIVPVRRASLNLNFEAPLNIGMDSGKLRQDAG 307
            +SSP AC ++P+ A  VN P  LLDAL++H+ E     L +  STDQV+ G+            S  REEE   PVN YG++K   E+ I                                       Q+RWP  +ILRSS I GP SP  + +  FLQ++   L+    P   F+DE R+ +++ D++S++  LL   +P   L         GR   IL                             YNMGGP+ L+RVD+   V    G         IV    +S+N    +P +I M S KL  + G
Sbjct:   81 ISSPGACEKDPDTARAVNVPSKLLDALSVHAGEHGSHPLFIHLSTDQVYDGS-----------RSNWREEEAGNPVNAYGKTKLEAEKLI---------------------------------------QERWPNCVILRSSIIYGPQSPTPVSRALFLQFVARQLKEGT-PTSFFNDEFRNPVFVDDIVSVVLRLL---QPGTVLS--------GRWACIL----------------------------VYNMGGPERLSRVDMAAKVAEVWGYS----PDAIVSAPSSSVNRGVASPADISMTSRKLETELG 300          
BLAST of EWM21616.1 vs. NCBI_GenBank
Match: gi|551584921|ref|XP_005777782.1| (hypothetical protein EMIHUDRAFT_115555 [Emiliania huxleyi CCMP1516] >gi|485630075|gb|EOD25353.1| hypothetical protein EMIHUDRAFT_115555 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 92.4337 bits (228), Expect = 1.369e-17
Identity = 97/312 (31.09%), Postives = 131/312 (41.99%), Query Frame = 0
Query:    1 MSSPAACARNPEKAMRVN-CPLALLDALALHSPEALLVFFSTDQVFSGTVSPPALYSEAGESGRREEEEPVNVYGRSKRAFERAIQVRPDRTFTRHSSSPRVYVAAALSLSISSSPPPVDLAVPQDRWPRHLILRSSNIIGPPSPFLRQGKFLQWLDELLETSVGPLELFDDECRSFLYLQDVLSLLCALLDSYRPSRPLEGPTAGGNVGRGEPILGAREGEDAKDASSLQRASLPASARLLVGTYNMGGPDALTRVDLGRLVWRARGGERGDCSGRIVPVRRASL---NLNFEAPLNIGMDSGKLRQDAGR 308
            +SSPA C R+P +A  VN CP  LL A+  H   A  VF STDQV+ G  +P   Y+E   +       PVNVYG+SK +FERA+                                    A+P     R + LRSS I+GPP+P   + K     D  +     P    D + RS +++ D++S+L +L                                 A+D  S Q A          G YNMGGP+ +TRV++   V  A+GG   D    I PV R+SL        +P +I MDS KLR   G 
Sbjct:  111 ISSPAVCERDPARARAVNECP-PLLAAVPAH---ACFVFLSTDQVYDGLAAP---YTETSAAA------PVNVYGQSKLSFERALTA----------------------------------ALPS----RSVCLRSSLILGPPTPGRHRYKQPTGTDHRVSFRSSPSS--DAQVRSVVWVGDIVSILASL---------------------------------ARDGVSPQSA----------GVYNMGGPERVTRVEVAEAV-AAQGGY--DAPQLIRPVARSSLPPAARAVASPPDISMDSTKLRSLTGH 323          
BLAST of EWM21616.1 vs. NCBI_GenBank
Match: gi|397575899|gb|EJK49954.1| (hypothetical protein THAOC_31118 [Thalassiosira oceanica])

HSP 1 Score: 84.3445 bits (207), Expect = 8.779e-15
Identity = 67/196 (34.18%), Postives = 99/196 (50.51%), Query Frame = 0
Query:    1 MSSPAACARNPEKAMRVNCPLALLDALALHSPEALLVFFSTDQVFSGTVSPPALYSEAGESGRREEEEPVNVYGRSKRAFERAIQVRPDRTFTRHSSSPRVYVAAALSLSISSSPPPVDLAVPQDRWPRHLILRSSNIIGPPSPFLRQG------KFLQWLDELLETSVGPLELFDDECRSFLYLQDVLSLLCALL 190
            +SSP  C  +P+ A ++NCP+ LL      S +A +++ STDQV+ G  S    YSE+      +   PVNVYGR+K AFER + +R         SSP + V  A           +  A+     P  + LRSS I+GPP P LR G       F+Q++   LE S  P   + +E RS ++++DV+  +   L
Sbjct:  107 LSSPTHCENHPDDAWKINCPVDLL------SFKAPIIYLSTDQVYEGLKS---FYSES------DRTVPVNVYGRTKLAFERVL-LRDG-----GDSSPLLSVDEA-----REDTERIPRAIEHTAAPNSVCLRSSLILGPPVP-LRNGCRKGFDTFIQFISSRLE-SAAPTVYYTNEYRSVVHIKDVVRAILHFL 274          
BLAST of EWM21616.1 vs. NCBI_GenBank
Match: gi|223999833|ref|XP_002289589.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974797|gb|EED93126.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 84.7297 bits (208), Expect = 9.713e-15
Identity = 65/190 (34.21%), Postives = 101/190 (53.16%), Query Frame = 0
Query:    1 MSSPAACARNPEKAMRVNCPLALLDALALHSPEALLVFFSTDQVFSGTVSPPALYSEAGESGRREEEEPVNVYGRSKRAFERAIQVRPDRTFTRHSSSPRVYVAAALSLSISSSPPPVDLAVPQDRWPRH--LILRSSNIIGPPSPF---LRQG--KFLQWLDELLETSVGPLELFDDECRSFLYLQDVL 183
            +SSP  C  + E+A ++NCP+ LL      S +A +++ STDQV+ GT      Y      G  +E  PVNVYGR+K AFER +            SS    +  A  L  S+ P  +   +  +  P +  +ILRSS I+G P+PF    R+G   FLQ++++ L+  +   + F +E RS ++L+DV+
Sbjct:  125 LSSPFYCESHAEEAWKINCPVELL------SLKAPIMYMSTDQVYEGT---KQFY------GENDETVPVNVYGRTKLAFERIL-------LGGLGSST---LLTAKELGSSTLPEFLTNVISNNLRPHNKSVILRSSLILGKPTPFPNGCRKGFPSFLQFIEDRLKNQIST-DYFVNEYRSVVHLEDVI 288          
BLAST of EWM21616.1 vs. NCBI_GenBank
Match: gi|223998907|ref|XP_002289126.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974334|gb|EED92663.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 82.8037 bits (203), Expect = 3.002e-14
Identity = 64/190 (33.68%), Postives = 102/190 (53.68%), Query Frame = 0
Query:    1 MSSPAACARNPEKAMRVNCPLALLDALALHSPEALLVFFSTDQVFSGTVSPPALYSEAGESGRREEEEPVNVYGRSKRAFERAIQVRPDRTFTRHSSSPRVYVAAALSLSISSSPPPVDLAVPQDRWPRH--LILRSSNIIGPPSPF---LRQG--KFLQWLDELLETSVGPLELFDDECRSFLYLQDVL 183
            +SSP  C  + E+A ++NCP+ LL      S +A +++ STDQV+ GT      Y      G  +E  PVN+YGR+K AFER I V    + T         +  A  L + + P  +   +  +  P +  +ILRSS I+G P+PF    R+G   FLQ++++ L+  +   + F +E RS ++L+DV+
Sbjct:  125 LSSPFYCESHAEEAWKINCPVELL------SLKAPIMYMSTDQVYEGT---KQFY------GENDETVPVNMYGRTKLAFER-ILVGGLGSST---------LLTAKELGLCTLPEFLTNVISNNLRPHNKSVILRSSLILGKPTPFPNGCRKGFPSFLQFIEDRLKNQIST-DYFVNEYRSVVHLEDVI 288          
BLAST of EWM21616.1 vs. NCBI_GenBank
Match: gi|676399043|ref|XP_009042799.1| (hypothetical protein AURANDRAFT_72848 [Aureococcus anophagefferens] >gi|323446280|gb|EGB02502.1| hypothetical protein AURANDRAFT_72848 [Aureococcus anophagefferens])

HSP 1 Score: 82.0333 bits (201), Expect = 1.624e-13
Identity = 84/279 (30.11%), Postives = 111/279 (39.78%), Query Frame = 0
Query:    1 MSSPAACARNPEKAMRVNCPLALLDALALHSPEALLVFFSTDQVFSGTVSPPA-LYSEAGESGRREEEEPVNV-----YGRSKRAFERAIQVRPDRTFTRHSSSPRVYVAAALSLSISSSPPPVDLAVPQDRWPRHLILRSSNIIGPPSPFLRQGKFLQWLDELLETSVGPLELFDDECRSFLYLQDVLSLLCALLDSYRPSR-PLEGPTAGGNVGRGE-PILGAREGEDAKDASSLQRASLPASARLLVGTYNMGGPDALTRVDLGRLVWRARGGERG 271
            ++SPAAC  +  +A   NCPL  L+ L    P+ALLV  STD V +G     A  Y + G S  R             YGR+K AFE A+                                          W R ++ R SN++G P+PF   GKF QW+   L     P+ L+ DE R+F+ ++ V   + A    Y  SR P +   A         P   AR    A       RA  PA    +    N GGPD L+R  LGR V    G + G
Sbjct:  173 LASPAACEADEARAAATNCPLGFLECLHACCPDALLVHCSTDLVLAGVDDDGAPAYGDGGASAPRAAALAAAARPATAYGRTKLAFEAALAAG---------------------------------------WQRAVVFRLSNVVGAPAPFTGDGKFAQWVAGELRRG-EPVTLWSDEARNFVDVRQVCDGVAAAARLYGVSRQPCDASDARALAAAAHSPAETARFHAKA-------RALHPA----VFLHVNCGGPDCLSRYALGRAVANTLGLDAG 400          
BLAST of EWM21616.1 vs. NCBI_GenBank
Match: gi|695464120|ref|XP_009538875.1| (hypothetical protein PHYSODRAFT_532795 [Phytophthora sojae] >gi|348666186|gb|EGZ06014.1| hypothetical protein PHYSODRAFT_532795 [Phytophthora sojae])

HSP 1 Score: 80.1073 bits (196), Expect = 2.857e-13
Identity = 84/313 (26.84%), Postives = 134/313 (42.81%), Query Frame = 0
Query:    1 MSSPAACARNPEKAMRVNCPLALLDALALHSPEALLVFFSTDQVFSGTVSPPALYSEAGESGRREEEEPVNVYGRSKRAFERAIQVRPDRTFTRHSSSPRVYVAAALSLSISSSPPPVDLAVPQDRWPRHLILRSSNIIGPPSPFLRQG---KFLQWLDELL---ETSVGPLELFDDECRSFLYLQDVLSLLCALLDSYRPSRPLEGPTAGGNVGRGEPILGAREGEDAKDASSLQRASLPASARLLVGTYNMGGPDALTRVDLGRLVWRARGGER-----GDCSGRIVPVRRASLNLNFEAPLNIGMDSGKL 302
            +SSPA C ++P KA      + LL+ L   +     V FSTD V+ GT +    + E+ E         ++VYG SK  F++ +        + H S+   +                            L+LR +N++GP +P        KF+QWL + L   ET+  PL+L+ DE RS+LY+ D++S+L  LL                                A +A+        ASA L+    N+GG +AL+RV+L R  + A G +         +  I P  RA ++L + +PLN  + + +L
Sbjct:  101 ISSPAVCQKDPNKACAPRGVVNLLEKLPWRTR---FVHFSTDFVYEGTQA----WGESYEEDAAVSSSKLSVYGASKLRFDQFL-------LSGHWSANFEF----------------------------LVLRIANVVGPVAPVFPNKSAPKFMQWLHQQLFQPETADVPLKLWSDEFRSYLYIHDLVSILFKLL--------------------------------ATNAN--------ASATLV----NLGGLEALSRVELARR-YIAAGAKHHVSAVATVTRAIEPTARARVDLGYPSPLNTKLSTARL 326          
The following BLAST results are available for this feature:
BLAST of EWM21616.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101872|gb|EWM21617.1|0.000e+0100.00methionine adenosyltransferase 2 subunit beta [Nan... [more]
gi|585101871|gb|EWM21616.1|0.000e+0100.00methionine adenosyltransferase 2 subunit beta [Nan... [more]
gi|551645161|ref|XP_005825370.1|1.218e-3133.99hypothetical protein GUITHDRAFT_115530 [Guillardia... [more]
gi|545354912|ref|XP_005643283.1|9.835e-2129.62methionine adenosyltransferase regulatory beta sub... [more]
gi|551584921|ref|XP_005777782.1|1.369e-1731.09hypothetical protein EMIHUDRAFT_115555 [Emiliania ... [more]
gi|397575899|gb|EJK49954.1|8.779e-1534.18hypothetical protein THAOC_31118 [Thalassiosira oc... [more]
gi|223999833|ref|XP_002289589.1|9.713e-1534.21predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|223998907|ref|XP_002289126.1|3.002e-1433.68predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|676399043|ref|XP_009042799.1|1.624e-1330.11hypothetical protein AURANDRAFT_72848 [Aureococcus... [more]
gi|695464120|ref|XP_009538875.1|2.857e-1326.84hypothetical protein PHYSODRAFT_532795 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9094rna9094Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications