EWM21634.1, cds9057 (CDS) Nannochloropsis gaditana

Overview
NameEWM21634.1
Unique Namecds9057
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:307070..307288 -
Alignment locationKK037251.1:306153..306924 -
Alignment locationKK037251.1:305101..305984 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21634.1
Productdna polymerase mu
Orig transcript idgnl|cribi|Naga_100012g39.1966.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:307070..307288 -
KK037251.1supercontigKK037251.1:306153..306924 -
KK037251.1supercontigKK037251.1:305101..305984 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006259DNA metabolic process
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0003887DNA-directed DNA polymerase activity
GO:0003677DNA binding
GO:0034061DNA polymerase activity
Vocabulary: INTERPRO
TermDefinition
IPR010996DNA_pol_b-like_N
IPR027421DNA_pol_X_lyase_dom
IPR001357BRCT_dom
IPR029398PolB_thumb
IPR002054DNA-dir_DNA_pol_X
IPR022312DNA_pol_X
Homology
BLAST of EWM21634.1 vs. NCBI_GenBank
Match: gi|585101889|gb|EWM21634.1| (dna polymerase mu [Nannochloropsis gaditana])

HSP 1 Score: 1284.24 bits (3322), Expect = 0.000e+0
Identity = 624/624 (100.00%), Postives = 624/624 (100.00%), Query Frame = 0
Query:    1 MKRKAASPRKTAAPFSSCFADTEVLILEDGGISPHDISPMRAGLLLKKIEQHGGTAEVIPANEVLEGRLRARERDSKLSRATHVVLSKSLEGKVPALVERLRREKNKDTNENGTIYAPLPLTVGRSCQVVSPDWVSDCLLHRQLVDPRPYLLSLDRAERNEGGDAYTEAATKREEAAEPTAGGTKKARLSHPSASTPTVVSPTHAAIEARLAPFSDLDPTTRDAFFAYGGPLVLSKPFSASFPKFACQRPAPAQHPNRHLTPLFEDLVEMYGLGVGDKERETAFGRVLAVLRAWPWKVRESKELKGIRHVGGSMRAVIEEILMTGRCSRLEKLREDSSHRCLLDLCRVHQVGHATARKWYEAGYRSVAQIQADLKRAEETGDGEEQAGGEVERYLGSTFCTSQRPSMEQLLGILFVDEYSVKMTRCQVAALEGIVREAALKALAARGLGAETLLLQTCGGYLRGKALNGDADVLVSCTQAQGQAGLREEIKRIMQEDMGIDLLILKEGNTMGGFASKPTHEKIASHDNMLTLIKHEGFYRRLDVISPPPDQWAFCVLGWSGSKQMEKDLRDYADEQGLHLSQQAVFRETKRLTNPKSIDGVFHSEEDVWEFLGLKYLPPRLRCA 624
            MKRKAASPRKTAAPFSSCFADTEVLILEDGGISPHDISPMRAGLLLKKIEQHGGTAEVIPANEVLEGRLRARERDSKLSRATHVVLSKSLEGKVPALVERLRREKNKDTNENGTIYAPLPLTVGRSCQVVSPDWVSDCLLHRQLVDPRPYLLSLDRAERNEGGDAYTEAATKREEAAEPTAGGTKKARLSHPSASTPTVVSPTHAAIEARLAPFSDLDPTTRDAFFAYGGPLVLSKPFSASFPKFACQRPAPAQHPNRHLTPLFEDLVEMYGLGVGDKERETAFGRVLAVLRAWPWKVRESKELKGIRHVGGSMRAVIEEILMTGRCSRLEKLREDSSHRCLLDLCRVHQVGHATARKWYEAGYRSVAQIQADLKRAEETGDGEEQAGGEVERYLGSTFCTSQRPSMEQLLGILFVDEYSVKMTRCQVAALEGIVREAALKALAARGLGAETLLLQTCGGYLRGKALNGDADVLVSCTQAQGQAGLREEIKRIMQEDMGIDLLILKEGNTMGGFASKPTHEKIASHDNMLTLIKHEGFYRRLDVISPPPDQWAFCVLGWSGSKQMEKDLRDYADEQGLHLSQQAVFRETKRLTNPKSIDGVFHSEEDVWEFLGLKYLPPRLRCA
Sbjct:    1 MKRKAASPRKTAAPFSSCFADTEVLILEDGGISPHDISPMRAGLLLKKIEQHGGTAEVIPANEVLEGRLRARERDSKLSRATHVVLSKSLEGKVPALVERLRREKNKDTNENGTIYAPLPLTVGRSCQVVSPDWVSDCLLHRQLVDPRPYLLSLDRAERNEGGDAYTEAATKREEAAEPTAGGTKKARLSHPSASTPTVVSPTHAAIEARLAPFSDLDPTTRDAFFAYGGPLVLSKPFSASFPKFACQRPAPAQHPNRHLTPLFEDLVEMYGLGVGDKERETAFGRVLAVLRAWPWKVRESKELKGIRHVGGSMRAVIEEILMTGRCSRLEKLREDSSHRCLLDLCRVHQVGHATARKWYEAGYRSVAQIQADLKRAEETGDGEEQAGGEVERYLGSTFCTSQRPSMEQLLGILFVDEYSVKMTRCQVAALEGIVREAALKALAARGLGAETLLLQTCGGYLRGKALNGDADVLVSCTQAQGQAGLREEIKRIMQEDMGIDLLILKEGNTMGGFASKPTHEKIASHDNMLTLIKHEGFYRRLDVISPPPDQWAFCVLGWSGSKQMEKDLRDYADEQGLHLSQQAVFRETKRLTNPKSIDGVFHSEEDVWEFLGLKYLPPRLRCA 624          
BLAST of EWM21634.1 vs. NCBI_GenBank
Match: gi|585101888|gb|EWM21633.1| (dna polymerase mu [Nannochloropsis gaditana])

HSP 1 Score: 1279.23 bits (3309), Expect = 0.000e+0
Identity = 624/625 (99.84%), Postives = 624/625 (99.84%), Query Frame = 0
Query:    1 MKRKAASPRKTAAPFSSCFADTEVLILEDGGISPHDISPMRAGLLLKKIEQHGGTAEVIPANEVLEGRLRARE-RDSKLSRATHVVLSKSLEGKVPALVERLRREKNKDTNENGTIYAPLPLTVGRSCQVVSPDWVSDCLLHRQLVDPRPYLLSLDRAERNEGGDAYTEAATKREEAAEPTAGGTKKARLSHPSASTPTVVSPTHAAIEARLAPFSDLDPTTRDAFFAYGGPLVLSKPFSASFPKFACQRPAPAQHPNRHLTPLFEDLVEMYGLGVGDKERETAFGRVLAVLRAWPWKVRESKELKGIRHVGGSMRAVIEEILMTGRCSRLEKLREDSSHRCLLDLCRVHQVGHATARKWYEAGYRSVAQIQADLKRAEETGDGEEQAGGEVERYLGSTFCTSQRPSMEQLLGILFVDEYSVKMTRCQVAALEGIVREAALKALAARGLGAETLLLQTCGGYLRGKALNGDADVLVSCTQAQGQAGLREEIKRIMQEDMGIDLLILKEGNTMGGFASKPTHEKIASHDNMLTLIKHEGFYRRLDVISPPPDQWAFCVLGWSGSKQMEKDLRDYADEQGLHLSQQAVFRETKRLTNPKSIDGVFHSEEDVWEFLGLKYLPPRLRCA 624
            MKRKAASPRKTAAPFSSCFADTEVLILEDGGISPHDISPMRAGLLLKKIEQHGGTAEVIPANEVLEGRLRARE RDSKLSRATHVVLSKSLEGKVPALVERLRREKNKDTNENGTIYAPLPLTVGRSCQVVSPDWVSDCLLHRQLVDPRPYLLSLDRAERNEGGDAYTEAATKREEAAEPTAGGTKKARLSHPSASTPTVVSPTHAAIEARLAPFSDLDPTTRDAFFAYGGPLVLSKPFSASFPKFACQRPAPAQHPNRHLTPLFEDLVEMYGLGVGDKERETAFGRVLAVLRAWPWKVRESKELKGIRHVGGSMRAVIEEILMTGRCSRLEKLREDSSHRCLLDLCRVHQVGHATARKWYEAGYRSVAQIQADLKRAEETGDGEEQAGGEVERYLGSTFCTSQRPSMEQLLGILFVDEYSVKMTRCQVAALEGIVREAALKALAARGLGAETLLLQTCGGYLRGKALNGDADVLVSCTQAQGQAGLREEIKRIMQEDMGIDLLILKEGNTMGGFASKPTHEKIASHDNMLTLIKHEGFYRRLDVISPPPDQWAFCVLGWSGSKQMEKDLRDYADEQGLHLSQQAVFRETKRLTNPKSIDGVFHSEEDVWEFLGLKYLPPRLRCA
Sbjct:    1 MKRKAASPRKTAAPFSSCFADTEVLILEDGGISPHDISPMRAGLLLKKIEQHGGTAEVIPANEVLEGRLRAREQRDSKLSRATHVVLSKSLEGKVPALVERLRREKNKDTNENGTIYAPLPLTVGRSCQVVSPDWVSDCLLHRQLVDPRPYLLSLDRAERNEGGDAYTEAATKREEAAEPTAGGTKKARLSHPSASTPTVVSPTHAAIEARLAPFSDLDPTTRDAFFAYGGPLVLSKPFSASFPKFACQRPAPAQHPNRHLTPLFEDLVEMYGLGVGDKERETAFGRVLAVLRAWPWKVRESKELKGIRHVGGSMRAVIEEILMTGRCSRLEKLREDSSHRCLLDLCRVHQVGHATARKWYEAGYRSVAQIQADLKRAEETGDGEEQAGGEVERYLGSTFCTSQRPSMEQLLGILFVDEYSVKMTRCQVAALEGIVREAALKALAARGLGAETLLLQTCGGYLRGKALNGDADVLVSCTQAQGQAGLREEIKRIMQEDMGIDLLILKEGNTMGGFASKPTHEKIASHDNMLTLIKHEGFYRRLDVISPPPDQWAFCVLGWSGSKQMEKDLRDYADEQGLHLSQQAVFRETKRLTNPKSIDGVFHSEEDVWEFLGLKYLPPRLRCA 625          
BLAST of EWM21634.1 vs. NCBI_GenBank
Match: gi|299472566|emb|CBN80507.1| (DNA polymerase mu [Ectocarpus siliculosus])

HSP 1 Score: 182.57 bits (462), Expect = 2.549e-46
Identity = 134/422 (31.75%), Postives = 205/422 (48.58%), Query Frame = 0
Query:  243 PKFACQRPAPAQHPNRHLTPLFEDLVEMYGLGVGDKERETAFGRVLAVLRAWPWKVRESKELKGIRHVGGSMRAVIEEILMTGRCSRLEKLREDSSHRCLLDLCRVHQVGHATARKWYEAGYRSVAQIQADLKRAEETGDGEEQAGGEVERYLGSTFCTSQRPSM--EQLLGILFVDEYSVKMTRCQVAALEGIVREAALKALAARGLGAETLLLQTCGGYLRGKALNGDADVLVSCTQAQGQAG-------LR--------------------EEIKRIMQEDMGIDLL-------ILKEGNTMGGF----ASKPTHEKIASHDNMLTLIKHEGFYRRLDVISPPPDQWAFCVLGWSGSKQMEKDLRDYADEQGLH-LSQQAVFRETKRLTNPKSIDGV-FHSEEDVWEFLGLKYLPPRLR 622
            P +ACQRP P +H N  +T + + + +MY + VGD +R  +F R+ +VLR     +R   E++ + HVG  M   ++EIL TG   RLE+L+    ++    L +VH VG  TA+ WY  G RSV   +  L   ++  +G+E                 +RP++  E ++G+    +  V + R +V  +   VRE A +    R     TLL + CGG+ RGK    D DVLVS  +  G+ G       LR                    E+++    E +   L+        L +G  MGGF      +    K+   + ++ L +  G   R+D++     QW F +LGWSG+   EKD+R Y +EQ  + LSQ+ V   T R T+    D V F +EED++ FLGL+Y+PP LR
Sbjct:  187 PMYACQRPTPMKHHNHEITDVLDAMTKMYKV-VGDGQRADSFMRLSSVLRFLDRTIRSGSEIRHVHHVGERMVEAVDEILATGTLGRLEELKSHPRNQVCQQLMKVHGVGSRTAKDWYNRGIRSVEDARRTLLPNDDDTEGDE-----------------KRPNLKPEVVMGLKHFHDMQVPIGRDEVVGIADEVREEAERFGRERDPEG-TLLFEVCGGFRRGKETLHDVDVLVSFRRGNGEPGHQGFVEALRALDGYLVEGEQIVGAEVKAFEDLEYFFVEGLKERLMERGKLCATLYQGQ-MGGFTKAKGGQAPQPKLEREEVLMALWQLPGRKCRIDIVQVASSQWPFALLGWSGTVMFEKDVRRYTEEQTEYKLSQKGV---TIRATDEPVTDIVSFQTEEDIFRFLGLEYIPPHLR 585          
BLAST of EWM21634.1 vs. NCBI_GenBank
Match: gi|562876575|ref|XP_006166068.1| (PREDICTED: DNA-directed DNA/RNA polymerase mu isoform X2 [Tupaia chinensis])

HSP 1 Score: 148.673 bits (374), Expect = 4.867e-35
Identity = 122/406 (30.05%), Postives = 192/406 (47.29%), Query Frame = 0
Query:  235 SKPFSASFPKFACQRPAPAQHPNRHLTPLFEDLVEMYGLGVGDKERETAFGRVLAVLRAWPWKVRESKELKGIRHVGGSMRAVIEEILMTGRCSRLEKLREDSSHRCLLDLCRVHQVGHATARKWYEAGYRSVAQIQADLKRAEETGDGEEQAGGEVERYLGSTFCTSQRPSMEQLLGILFVDEYSVKMTRCQVAALEGIVREAALKALAARGLGAETLLLQTCGGYLRGKALNGDADVLVSCTQAQGQAGLREEIKRIMQ----------EDMGIDLLILKEGNTMGGFASKPTHEKIASHDNMLTLIKHEGFYR--RLDVISPPPDQWAFCVLGWSGSKQMEKDLRDYA-DEQGLHLSQQAVFR-ETKRLTNPKSIDGVFH--SEEDVWEFLGLKYLPPRLRCA 624
            S P  +  P +ACQRP P  H N HL+   E L E  G   G + R  +F R  +VLRA P  V    +L+G+ ++GG    V++E+L  G C  +E+++    ++ +    +V  VG  TA +WY+ G R++     DL++                         SQR + +Q  G+ +  + S  + R    AL+ +V  A  + L     GA   L    GG+ RGK    D D+L+S  +   + GL  ++   +Q          +  G    I+++G+TM  F              +  L +  G ++  R+D++  P  Q+ F +LGW+GS+  E++LR ++  E+GL L+ Q +F  E KR         VFH  SEED++  LGLKYLPP  R A
Sbjct:  128 SPPGPSQMPVYACQRPTPLLHHNTHLSEALETLAEAAGFE-GSEGRLLSFRRAASVLRALPGPVTALSQLQGLPYLGGHSFRVVQELLEHGVCEEVERIQSSDRYQTMKLFTQVFGVGVKTANRWYQEGLRTL----DDLRK------------------------QSQRLTRQQRAGLQYHQDLSTPVQRPDAEALQQVVEVAVRQTLP----GATVTL---TGGFRRGKLQGHDVDLLISHPEEGQEVGLLPQLLLRLQDQGLLMYQQYQRGGEPSHIVRQGHTMDAFERS---------FCIFRLPQPPGAWKAVRVDLVVVPISQFPFALLGWTGSQLFERELRRFSHQERGLRLTSQGLFDPEQKR---------VFHATSEEDIFRHLGLKYLPPEQRNA 479          
BLAST of EWM21634.1 vs. NCBI_GenBank
Match: gi|58865402|ref|NP_001011912.1| (DNA-directed DNA/RNA polymerase mu [Rattus norvegicus] >gi|51859148|gb|AAH81868.1| Polymerase (DNA directed), mu [Rattus norvegicus] >gi|149047644|gb|EDM00314.1| rCG35832 [Rattus norvegicus])

HSP 1 Score: 144.821 bits (364), Expect = 1.232e-33
Identity = 114/410 (27.80%), Postives = 187/410 (45.61%), Query Frame = 0
Query:  237 PFSASFPKFACQRPAPAQHPNRHLTPLFEDLVEMYGLGVGDKERETAFGRVLAVLRAWPWKVRESKELKGIRHVGGSMRAVIEEILMTGRCSRLEKLREDSSHRCLLDLCRVHQVGHATARKWYEAGYRSVAQIQADLKRAEETGDGEEQAGGEVERYLGSTFCTSQRPSMEQLLGILFVDEYSVKMTRCQVAALEGIVREAALKALAARGLGAETLLLQTCGGYLRGKALNGDADVLVSCTQAQGQAGLREEIKRIMQEDMGIDLL-------------ILKEGNTMGGFASK------PTHEKIASHDNMLTLIKHEGFYRRLDVISPPPDQWAFCVLGWSGSKQMEKDLRDYA-DEQGLHLSQQAVFRETKRLTNPKSIDGVFH--SEEDVWEFLGLKYLPPRLRCA 624
            P S + P +ACQRP+P    N  L+   E L E  G   G + R   F R  ++L++ P+ V    +L G+ + G     VI+E+L  G C  +E++R    H+ +     +  VG  TA +WY+ G R++ +++                               QR + +Q  G+ +  + S  ++R +  AL+ +V EAA++ +     GA   L    GG+ RGK    D D L++  +   + GL   + R +Q   G+ L              IL++ +TM  F         P  ++ A    +      +    R+D++  P  Q+ F +LGW+GS+  E++LR ++  E+GL L+   +F   ++          FH  SEEDV+ FLGLKYLPP  R A
Sbjct:  133 PISVTIPAYACQRPSPLTPHNTLLSEALETLAEAAGFE-GKEGRFLTFYRAASMLKSLPYPVTSLSQLHGLPYFGEHSFRVIQELLEHGTCEEVEQIRCSERHQTMKLFTHIFGVGVKTASRWYQEGLRTLDELREQ----------------------------PQRLTQQQKAGLQYYQDLSTPVSRAEAEALQQLV-EAAMREILP---GATVTL---TGGFRRGKLQGHDVDFLITHPEEGQEVGLLPRVMRCLQ-SQGLVLYHQYHRSHLADSAHILRQRSTMDAFERSFCILRLPQSQQAALEGPLHPCPTWKAV--RVDLVVTPNSQFPFALLGWTGSQFFERELRRFSRQEKGLCLNSHGLFDPERK--------TFFHATSEEDVFRFLGLKYLPPEQRNA 495          
BLAST of EWM21634.1 vs. NCBI_GenBank
Match: gi|564384282|ref|XP_006251274.1| (PREDICTED: DNA-directed DNA/RNA polymerase mu isoform X2 [Rattus norvegicus])

HSP 1 Score: 144.436 bits (363), Expect = 2.736e-33
Identity = 114/410 (27.80%), Postives = 187/410 (45.61%), Query Frame = 0
Query:  237 PFSASFPKFACQRPAPAQHPNRHLTPLFEDLVEMYGLGVGDKERETAFGRVLAVLRAWPWKVRESKELKGIRHVGGSMRAVIEEILMTGRCSRLEKLREDSSHRCLLDLCRVHQVGHATARKWYEAGYRSVAQIQADLKRAEETGDGEEQAGGEVERYLGSTFCTSQRPSMEQLLGILFVDEYSVKMTRCQVAALEGIVREAALKALAARGLGAETLLLQTCGGYLRGKALNGDADVLVSCTQAQGQAGLREEIKRIMQEDMGIDLL-------------ILKEGNTMGGFASK------PTHEKIASHDNMLTLIKHEGFYRRLDVISPPPDQWAFCVLGWSGSKQMEKDLRDYA-DEQGLHLSQQAVFRETKRLTNPKSIDGVFH--SEEDVWEFLGLKYLPPRLRCA 624
            P S + P +ACQRP+P    N  L+   E L E  G   G + R   F R  ++L++ P+ V    +L G+ + G     VI+E+L  G C  +E++R    H+ +     +  VG  TA +WY+ G R++ +++                               QR + +Q  G+ +  + S  ++R +  AL+ +V EAA++ +     GA   L    GG+ RGK    D D L++  +   + GL   + R +Q   G+ L              IL++ +TM  F         P  ++ A    +      +    R+D++  P  Q+ F +LGW+GS+  E++LR ++  E+GL L+   +F   ++          FH  SEEDV+ FLGLKYLPP  R A
Sbjct:  153 PISVTIPAYACQRPSPLTPHNTLLSEALETLAEAAGFE-GKEGRFLTFYRAASMLKSLPYPVTSLSQLHGLPYFGEHSFRVIQELLEHGTCEEVEQIRCSERHQTMKLFTHIFGVGVKTASRWYQEGLRTLDELREQ----------------------------PQRLTQQQKAGLQYYQDLSTPVSRAEAEALQQLV-EAAMREILP---GATVTL---TGGFRRGKLQGHDVDFLITHPEEGQEVGLLPRVMRCLQ-SQGLVLYHQYHRSHLADSAHILRQRSTMDAFERSFCILRLPQSQQAALEGPLHPCPTWKAV--RVDLVVTPNSQFPFALLGWTGSQFFERELRRFSRQEKGLCLNSHGLFDPERK--------TFFHATSEEDVFRFLGLKYLPPEQRNA 515          
BLAST of EWM21634.1 vs. NCBI_GenBank
Match: gi|947333882|ref|XP_014438679.1| (PREDICTED: DNA-directed DNA/RNA polymerase mu isoform X1 [Tupaia chinensis])

HSP 1 Score: 142.124 bits (357), Expect = 8.995e-33
Identity = 122/411 (29.68%), Postives = 192/411 (46.72%), Query Frame = 0
Query:  235 SKPFSASFPKFACQRPAPAQHPNRHLTPLFEDLVEMYGLGVGDKERETAFGRVLAVLRAWPWKVRESKELKGIRHVGGSMRAVIEEILMTGRCSRLEKLREDSSHRCLLDLCRVHQVGHATARKWYEAGYRSVAQIQADLKRAEETGDGEEQAGGEVERYLGSTFCTSQRPSMEQLLGILFVDEYSVKMTRCQVAALEGIVREAALKALAARGLGAETLLLQTCGGYLRGKALNGDADVLVSCTQAQGQAGLREEIKRIMQ----------EDMGIDLLILKEGNTMGGFASKPTHEKIASHDNMLTLIKHEGFYR--RLDVISPPPDQWAFCVLGWSGSKQ-----MEKDLRDYA-DEQGLHLSQQAVFR-ETKRLTNPKSIDGVFH--SEEDVWEFLGLKYLPPRLRCA 624
            S P  +  P +ACQRP P  H N HL+   E L E  G   G + R  +F R  +VLRA P  V    +L+G+ ++GG    V++E+L  G C  +E+++    ++ +    +V  VG  TA +WY+ G R++     DL++                         SQR + +Q  G+ +  + S  + R    AL+ +V  A  + L     GA   L    GG+ RGK    D D+L+S  +   + GL  ++   +Q          +  G    I+++G+TM  F              +  L +  G ++  R+D++  P  Q+ F +LGW+GS+       E++LR ++  E+GL L+ Q +F  E KR         VFH  SEED++  LGLKYLPP  R A
Sbjct:  128 SPPGPSQMPVYACQRPTPLLHHNTHLSEALETLAEAAGFE-GSEGRLLSFRRAASVLRALPGPVTALSQLQGLPYLGGHSFRVVQELLEHGVCEEVERIQSSDRYQTMKLFTQVFGVGVKTANRWYQEGLRTL----DDLRK------------------------QSQRLTRQQRAGLQYHQDLSTPVQRPDAEALQQVVEVAVRQTLP----GATVTL---TGGFRRGKLQGHDVDLLISHPEEGQEVGLLPQLLLRLQDQGLLMYQQYQRGGEPSHIVRQGHTMDAFERS---------FCIFRLPQPPGAWKAVRVDLVVVPISQFPFALLGWTGSQVPFPQLFERELRRFSHQERGLRLTSQGLFDPEQKR---------VFHATSEEDIFRHLGLKYLPPEQRNA 484          
BLAST of EWM21634.1 vs. NCBI_GenBank
Match: gi|564384286|ref|XP_006251276.1| (PREDICTED: DNA-directed DNA/RNA polymerase mu isoform X4 [Rattus norvegicus])

HSP 1 Score: 140.969 bits (354), Expect = 1.265e-32
Identity = 113/410 (27.56%), Postives = 187/410 (45.61%), Query Frame = 0
Query:  237 PFSASFPKFACQRPAPAQHPNRHLTPLFEDLVEMYGLGVGDKERETAFGRVLAVLRAWPWKVRESKELKGIRHVGGSMRAVIEEILMTGRCSRLEKLREDSSHRCLLDLCRVHQVGHATARKWYEAGYRSVAQIQADLKRAEETGDGEEQAGGEVERYLGSTFCTSQRPSMEQLLGILFVDEYSVKMTRCQVAALEGIVREAALKALAARGLGAETLLLQTCGGYLRGKALNGDADVLVSCTQAQGQAGLREEIKRIMQEDMGIDLL-------------ILKEGNTMGGFASK------PTHEKIASHDNMLTLIKHEGFYRRLDVISPPPDQWAFCVLGWSGSKQMEKDLRDYA-DEQGLHLSQQAVFRETKRLTNPKSIDGVFH--SEEDVWEFLGLKYLPPRLRCA 624
            P S + P +ACQRP+P    N  L+   E L E  G   G + R   F R  ++L++ P+ V    +L G+ + G     VI+E+L  G C  +E++R    H+ +     +  VG  TA +WY+ G R++ +++   +R                         +Q+       G+ +  + S  ++R +  AL+ +V EAA++ +     GA   L    GG+ RGK    D D L++  +   + GL   + R +Q   G+ L              IL++ +TM  F         P  ++ A    +      +    R+D++  P  Q+ F +LGW+GS+  E++LR ++  E+GL L+   +F   ++          FH  SEEDV+ FLGLKYLPP  R A
Sbjct:   71 PISVTIPAYACQRPSPLTPHNTLLSEALETLAEAAGFE-GKEGRFLTFYRAASMLKSLPYPVTSLSQLHGLPYFGEHSFRVIQELLEHGTCEEVEQIRCSERHQTMKLFTHIFGVGVKTASRWYQEGLRTLDELREQPQR------------------------LTQQQKAVLPTGLQYYQDLSTPVSRAEAEALQQLV-EAAMREILP---GATVTL---TGGFRRGKLQGHDVDFLITHPEEGQEVGLLPRVMRCLQ-SQGLVLYHQYHRSHLADSAHILRQRSTMDAFERSFCILRLPQSQQAALEGPLHPCPTWKAV--RVDLVVTPNSQFPFALLGWTGSQFFERELRRFSRQEKGLCLNSHGLFDPERK--------TFFHATSEEDVFRFLGLKYLPPEQRNA 437          
BLAST of EWM21634.1 vs. NCBI_GenBank
Match: gi|564384284|ref|XP_006251275.1| (PREDICTED: DNA-directed DNA/RNA polymerase mu isoform X3 [Rattus norvegicus])

HSP 1 Score: 141.739 bits (356), Expect = 1.768e-32
Identity = 113/410 (27.56%), Postives = 187/410 (45.61%), Query Frame = 0
Query:  237 PFSASFPKFACQRPAPAQHPNRHLTPLFEDLVEMYGLGVGDKERETAFGRVLAVLRAWPWKVRESKELKGIRHVGGSMRAVIEEILMTGRCSRLEKLREDSSHRCLLDLCRVHQVGHATARKWYEAGYRSVAQIQADLKRAEETGDGEEQAGGEVERYLGSTFCTSQRPSMEQLLGILFVDEYSVKMTRCQVAALEGIVREAALKALAARGLGAETLLLQTCGGYLRGKALNGDADVLVSCTQAQGQAGLREEIKRIMQEDMGIDLL-------------ILKEGNTMGGFASK------PTHEKIASHDNMLTLIKHEGFYRRLDVISPPPDQWAFCVLGWSGSKQMEKDLRDYA-DEQGLHLSQQAVFRETKRLTNPKSIDGVFH--SEEDVWEFLGLKYLPPRLRCA 624
            P S + P +ACQRP+P    N  L+   E L E  G   G + R   F R  ++L++ P+ V    +L G+ + G     VI+E+L  G C  +E++R    H+ +     +  VG  TA +WY+ G R++ +++   +R                         +Q+       G+ +  + S  ++R +  AL+ +V EAA++ +     GA   L    GG+ RGK    D D L++  +   + GL   + R +Q   G+ L              IL++ +TM  F         P  ++ A    +      +    R+D++  P  Q+ F +LGW+GS+  E++LR ++  E+GL L+   +F   ++          FH  SEEDV+ FLGLKYLPP  R A
Sbjct:  133 PISVTIPAYACQRPSPLTPHNTLLSEALETLAEAAGFE-GKEGRFLTFYRAASMLKSLPYPVTSLSQLHGLPYFGEHSFRVIQELLEHGTCEEVEQIRCSERHQTMKLFTHIFGVGVKTASRWYQEGLRTLDELREQPQR------------------------LTQQQKAVLPTGLQYYQDLSTPVSRAEAEALQQLV-EAAMREILP---GATVTL---TGGFRRGKLQGHDVDFLITHPEEGQEVGLLPRVMRCLQ-SQGLVLYHQYHRSHLADSAHILRQRSTMDAFERSFCILRLPQSQQAALEGPLHPCPTWKAV--RVDLVVTPNSQFPFALLGWTGSQFFERELRRFSRQEKGLCLNSHGLFDPERK--------TFFHATSEEDVFRFLGLKYLPPEQRNA 499          
BLAST of EWM21634.1 vs. NCBI_GenBank
Match: gi|564384280|ref|XP_006251273.1| (PREDICTED: DNA-directed DNA/RNA polymerase mu isoform X1 [Rattus norvegicus])

HSP 1 Score: 141.739 bits (356), Expect = 2.240e-32
Identity = 113/410 (27.56%), Postives = 187/410 (45.61%), Query Frame = 0
Query:  237 PFSASFPKFACQRPAPAQHPNRHLTPLFEDLVEMYGLGVGDKERETAFGRVLAVLRAWPWKVRESKELKGIRHVGGSMRAVIEEILMTGRCSRLEKLREDSSHRCLLDLCRVHQVGHATARKWYEAGYRSVAQIQADLKRAEETGDGEEQAGGEVERYLGSTFCTSQRPSMEQLLGILFVDEYSVKMTRCQVAALEGIVREAALKALAARGLGAETLLLQTCGGYLRGKALNGDADVLVSCTQAQGQAGLREEIKRIMQEDMGIDLL-------------ILKEGNTMGGFASK------PTHEKIASHDNMLTLIKHEGFYRRLDVISPPPDQWAFCVLGWSGSKQMEKDLRDYA-DEQGLHLSQQAVFRETKRLTNPKSIDGVFH--SEEDVWEFLGLKYLPPRLRCA 624
            P S + P +ACQRP+P    N  L+   E L E  G   G + R   F R  ++L++ P+ V    +L G+ + G     VI+E+L  G C  +E++R    H+ +     +  VG  TA +WY+ G R++ +++   +R                         +Q+       G+ +  + S  ++R +  AL+ +V EAA++ +     GA   L    GG+ RGK    D D L++  +   + GL   + R +Q   G+ L              IL++ +TM  F         P  ++ A    +      +    R+D++  P  Q+ F +LGW+GS+  E++LR ++  E+GL L+   +F   ++          FH  SEEDV+ FLGLKYLPP  R A
Sbjct:  153 PISVTIPAYACQRPSPLTPHNTLLSEALETLAEAAGFE-GKEGRFLTFYRAASMLKSLPYPVTSLSQLHGLPYFGEHSFRVIQELLEHGTCEEVEQIRCSERHQTMKLFTHIFGVGVKTASRWYQEGLRTLDELREQPQR------------------------LTQQQKAVLPTGLQYYQDLSTPVSRAEAEALQQLV-EAAMREILP---GATVTL---TGGFRRGKLQGHDVDFLITHPEEGQEVGLLPRVMRCLQSQ-GLVLYHQYHRSHLADSAHILRQRSTMDAFERSFCILRLPQSQQAALEGPLHPCPTWKAV--RVDLVVTPNSQFPFALLGWTGSQFFERELRRFSRQEKGLCLNSHGLFDPERK--------TFFHATSEEDVFRFLGLKYLPPEQRNA 519          
The following BLAST results are available for this feature:
BLAST of EWM21634.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101889|gb|EWM21634.1|0.000e+0100.00dna polymerase mu [Nannochloropsis gaditana][more]
gi|585101888|gb|EWM21633.1|0.000e+099.84dna polymerase mu [Nannochloropsis gaditana][more]
gi|299472566|emb|CBN80507.1|2.549e-4631.75DNA polymerase mu [Ectocarpus siliculosus][more]
gi|562876575|ref|XP_006166068.1|4.867e-3530.05PREDICTED: DNA-directed DNA/RNA polymerase mu isof... [more]
gi|58865402|ref|NP_001011912.1|1.232e-3327.80DNA-directed DNA/RNA polymerase mu [Rattus norvegi... [more]
gi|564384282|ref|XP_006251274.1|2.736e-3327.80PREDICTED: DNA-directed DNA/RNA polymerase mu isof... [more]
gi|947333882|ref|XP_014438679.1|8.995e-3329.68PREDICTED: DNA-directed DNA/RNA polymerase mu isof... [more]
gi|564384286|ref|XP_006251276.1|1.265e-3227.56PREDICTED: DNA-directed DNA/RNA polymerase mu isof... [more]
gi|564384284|ref|XP_006251275.1|1.768e-3227.56PREDICTED: DNA-directed DNA/RNA polymerase mu isof... [more]
gi|564384280|ref|XP_006251273.1|2.240e-3227.56PREDICTED: DNA-directed DNA/RNA polymerase mu isof... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9087rna9087Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications