EWM21662.1, cds9011 (CDS) Nannochloropsis gaditana

Overview
NameEWM21662.1
Unique Namecds9011
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:183236..183683 +
Alignment locationKK037251.1:183868..184189 +

Link to JBrowse

Properties
Property NameValue
End range.
End range184189
Protein idEWM21662.1
Productadaptor protein kanadaptin
Partialtrue
Orig transcript idgnl|cribi|Naga_101157g2.4156.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:183236..183683 +
KK037251.1supercontigKK037251.1:183868..184189 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR008984SMAD_FHA_domain
IPR000253FHA_dom
Homology
BLAST of EWM21662.1 vs. NCBI_GenBank
Match: gi|585101923|gb|EWM21662.1| (adaptor protein kanadaptin, partial [Nannochloropsis gaditana])

HSP 1 Score: 518.464 bits (1334), Expect = 0.000e+0
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 0
Query:    1 MEPPAPRRPPPLPKTDTVPPASASAQAPPHPNSTISSAYMPPSWGGRPSPSEPAVTLEVLRNGVEVDRLDLFASPTPSKPYVPADTASSQTPSSCQHYYTFGRLPGAVNFVLDNPTVSRVHAVCQFRKADGTLHVQDLGSTHGTYLNKQRLPPRSWESLHVGDILQFGQSTRLYVVSGPEVLGRPEVEDEKLEAYRTERAKVRAWREARRRKKEGLAAGQGPEEAGEEEGGISWGLGEDAEREEEEEEVEGGAGGRG 257
            MEPPAPRRPPPLPKTDTVPPASASAQAPPHPNSTISSAYMPPSWGGRPSPSEPAVTLEVLRNGVEVDRLDLFASPTPSKPYVPADTASSQTPSSCQHYYTFGRLPGAVNFVLDNPTVSRVHAVCQFRKADGTLHVQDLGSTHGTYLNKQRLPPRSWESLHVGDILQFGQSTRLYVVSGPEVLGRPEVEDEKLEAYRTERAKVRAWREARRRKKEGLAAGQGPEEAGEEEGGISWGLGEDAEREEEEEEVEGGAGGRG
Sbjct:    1 MEPPAPRRPPPLPKTDTVPPASASAQAPPHPNSTISSAYMPPSWGGRPSPSEPAVTLEVLRNGVEVDRLDLFASPTPSKPYVPADTASSQTPSSCQHYYTFGRLPGAVNFVLDNPTVSRVHAVCQFRKADGTLHVQDLGSTHGTYLNKQRLPPRSWESLHVGDILQFGQSTRLYVVSGPEVLGRPEVEDEKLEAYRTERAKVRAWREARRRKKEGLAAGQGPEEAGEEEGGISWGLGEDAEREEEEEEVEGGAGGRG 257          
BLAST of EWM21662.1 vs. NCBI_GenBank
Match: gi|1025047467|ref|XP_016446761.1| (PREDICTED: kanadaptin-like [Nicotiana tabacum])

HSP 1 Score: 129.413 bits (324), Expect = 3.810e-32
Identity = 79/209 (37.80%), Postives = 111/209 (53.11%), Query Frame = 0
Query:   39 YMPPSWGGRPSPSEPAVTLEVLRNGVEVDRLDLFASPTPSKPYVPADTASSQTPSSCQHYYTFGRLPGAVNFVLDNPTVSRVHAVCQFRKADGTLHVQDLGSTHGTYLNKQRLPPRSWESLHVGDILQFGQSTRLYVVSGPEVLGRPEVEDEKLEAYRTERAKVRAWREARRRKKEGLAAGQGPEEAGEEEGGISWGLGEDAEREEEEE 247
            Y  P+W GRP        LEVL++G  +D+ D+                           Y FGR+    +FVL++PT+SR HAV QFR   G  ++ DLGSTHGT++NK ++  R++  LHVGD+L+FG S+RLY+  GP  L  PE + +     R ++AK+R   E +  +   L A      A     GISWG+GEDA  E E+E
Sbjct:   89 YTIPTWSGRPCHQ---FYLEVLKDGSIIDQFDVHKKGA----------------------YMFGRV-DLCDFVLEHPTISRFHAVLQFR-GSGNAYLYDLGSTHGTFINKNQVEKRNYVELHVGDVLRFGNSSRLYIFQGPTDLMPPEADLK-----RIKQAKIR--EEVQDMEASLLRAKLEASRA----DGISWGMGEDAIEENEDE 259          
BLAST of EWM21662.1 vs. NCBI_GenBank
Match: gi|659111073|ref|XP_008455566.1| (PREDICTED: kanadaptin [Cucumis melo])

HSP 1 Score: 130.568 bits (327), Expect = 9.354e-31
Identity = 82/232 (35.34%), Postives = 118/232 (50.86%), Query Frame = 0
Query:   15 TDTVPPASASAQ------APPHPNSTISSAYMPPSWGGRPSPSEPAVTLEVLRNGVEVDRLDLFASPTPSKPYVPADTASSQTPSSCQHYYTFGRLPGAVNFVLDNPTVSRVHAVCQFRKADGTLHVQDLGSTHGTYLNKQRLPPRSWESLHVGDILQFGQSTRLYVVSGPEVLGRPEVEDEKLEAYRTERAKVRAWREARRRKKEGLAAGQGPEEAGEEEGGISWGLGEDA 240
            T+ V   SASA       A   P S +S  Y  PSW G PS       LEVL++G  VD+L+++                          Y FGR+    +FVL++PT+SR HAV QFR ++G  ++ DLGSTHG+++NK ++  R +  LHVGD+++FG S+RLY+  GP  L  PE +   ++  +     +      RR ++E   A            GISWG+GEDA
Sbjct:   80 TEKVSDGSASASDKAVELASKQPQS-VSVPYTIPSWSGVPSHR---FYLEVLKDGCIVDQLNVYEKGA----------------------YMFGRVD-LCDFVLEHPTISRFHAVLQFR-SNGDAYLYDLGSTHGSFINKNQVKKRVFVDLHVGDVIRFGHSSRLYIFQGPNHLMLPEADLTLMKKAKMREETLEREASLRRARQEASLA-----------DGISWGMGEDA 272          
BLAST of EWM21662.1 vs. NCBI_GenBank
Match: gi|731418089|ref|XP_002278556.2| (PREDICTED: kanadaptin [Vitis vinifera])

HSP 1 Score: 130.568 bits (327), Expect = 9.935e-31
Identity = 91/248 (36.69%), Postives = 131/248 (52.82%), Query Frame = 0
Query:   13 PKTDTVPP---ASASAQAPPHPNST----ISSAYMP---PSWGGRPSPSEPAVTLEVLRNGVEVDRLDLFASPTPSKPYVPADTASSQTPSSCQHYYTFGRLPGAVNFVLDNPTVSRVHAVCQFRKADGTLHVQDLGSTHGTYLNKQRLPPRSWESLHVGDILQFGQSTRLYVVSGPEVLGRPEVEDEKLEAYRTERAKVRAWREA---RRRKKEGLAAGQGPEEAGEEEGGISWGLGEDAEREEEEE 247
            P+T+   P   AS S+   P  NST      SA +P   PSW   P  S     LEVL++G  +D+LD++                       +  Y FGR+    +FVL++PT+SR HAV QF++ +G  ++ DLGSTHGT+LNK ++  + +  LHVGD+++FG STRLYV  GP  L  PE + +K+   +  R  ++  REA   R R++   A             GISWG+GEDA  E E++
Sbjct:  138 PRTEASEPSTEASESSAMQPSNNSTHHQKTQSAAVPYTIPSWSEPPGHS---FYLEVLKDGSIIDQLDVYE----------------------KGAYMFGRV-DICDFVLEHPTISRFHAVLQFKR-NGAAYLYDLGSTHGTFLNKSQVKKKVYTELHVGDVIRFGLSTRLYVFQGPTELMLPESDLKKIREAKILREAMQD-REASLSRARREAAFA------------DGISWGMGEDAIEEPEDD 345          
BLAST of EWM21662.1 vs. NCBI_GenBank
Match: gi|1083892781|ref|XP_018631506.1| (PREDICTED: kanadaptin isoform X3 [Nicotiana tomentosiformis])

HSP 1 Score: 130.183 bits (326), Expect = 1.255e-30
Identity = 79/209 (37.80%), Postives = 110/209 (52.63%), Query Frame = 0
Query:   39 YMPPSWGGRPSPSEPAVTLEVLRNGVEVDRLDLFASPTPSKPYVPADTASSQTPSSCQHYYTFGRLPGAVNFVLDNPTVSRVHAVCQFRKADGTLHVQDLGSTHGTYLNKQRLPPRSWESLHVGDILQFGQSTRLYVVSGPEVLGRPEVEDEKLEAYRTERAKVRAWREARRRKKEGLAAGQGPEEAGEEEGGISWGLGEDAEREEEEE 247
            Y  P+W GRP        LEVL++G  +D+ D+                           Y FGR+    +FVL++PT+SR HAV QFR   G  ++ DLGSTHGT++NK ++  R++  LHVGD+L+FG S+RLY+  GP  L  PE      +  R ++AK+R   E +  +   L A      A     GISWG+GEDA  E E+E
Sbjct:   89 YTIPTWSGRPCHQ---FYLEVLKDGSIIDQFDVHKKGA----------------------YMFGRV-DLCDFVLEHPTISRFHAVLQFR-GSGNAYLYDLGSTHGTFINKNQVEKRNYVELHVGDVLRFGNSSRLYIFQGPTDLMPPEA-----DLKRIKQAKIR--EEVQDMEASLLRAKLEASRA----DGISWGMGEDAIEENEDE 259          
BLAST of EWM21662.1 vs. NCBI_GenBank
Match: gi|1083892779|ref|XP_018631505.1| (PREDICTED: kanadaptin isoform X2 [Nicotiana tomentosiformis])

HSP 1 Score: 129.798 bits (325), Expect = 1.598e-30
Identity = 79/209 (37.80%), Postives = 110/209 (52.63%), Query Frame = 0
Query:   39 YMPPSWGGRPSPSEPAVTLEVLRNGVEVDRLDLFASPTPSKPYVPADTASSQTPSSCQHYYTFGRLPGAVNFVLDNPTVSRVHAVCQFRKADGTLHVQDLGSTHGTYLNKQRLPPRSWESLHVGDILQFGQSTRLYVVSGPEVLGRPEVEDEKLEAYRTERAKVRAWREARRRKKEGLAAGQGPEEAGEEEGGISWGLGEDAEREEEEE 247
            Y  P+W GRP        LEVL++G  +D+ D+                           Y FGR+    +FVL++PT+SR HAV QFR   G  ++ DLGSTHGT++NK ++  R++  LHVGD+L+FG S+RLY+  GP  L  PE      +  R ++AK+R   E +  +   L A      A     GISWG+GEDA  E E+E
Sbjct:   89 YTIPTWSGRPCHQ---FYLEVLKDGSIIDQFDVHKKGA----------------------YMFGRV-DLCDFVLEHPTISRFHAVLQFR-GSGNAYLYDLGSTHGTFINKNQVEKRNYVELHVGDVLRFGNSSRLYIFQGPTDLMPPEA-----DLKRIKQAKIR--EEVQDMEASLLRAKLEASRA----DGISWGMGEDAIEENEDE 259          
BLAST of EWM21662.1 vs. NCBI_GenBank
Match: gi|298204430|emb|CBI16910.3| (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 128.257 bits (321), Expect = 4.415e-30
Identity = 83/223 (37.22%), Postives = 119/223 (53.36%), Query Frame = 0
Query:   30 HPNSTISSA--YMPPSWGGRPSPSEPAVTLEVLRNGVEVDRLDLFASPTPSKPYVPADTASSQTPSSCQHYYTFGRLPGAVNFVLDNPTVSRVHAVCQFRKADGTLHVQDLGSTHGTYLNKQRLPPRSWESLHVGDILQFGQSTRLYVVSGPEVLGRPEVEDEKLEAYRTERAKVRAWREA---RRRKKEGLAAGQGPEEAGEEEGGISWGLGEDAEREEEEE 247
            H   T S+A  Y  PSW   P  S     LEVL++G  +D+LD++                          Y FGR+    +FVL++PT+SR HAV QF++ +G  ++ DLGSTHGT+LNK ++  + +  LHVGD+++FG STRLYV  GP  L  PE + +K+   +  R  ++  REA   R R++   A             GISWG+GEDA  E E++
Sbjct:    9 HHQKTQSAAVPYTIPSWSEPPGHS---FYLEVLKDGSIIDQLDVYEKGA----------------------YMFGRVD-ICDFVLEHPTISRFHAVLQFKR-NGAAYLYDLGSTHGTFLNKSQVKKKVYTELHVGDVIRFGLSTRLYVFQGPTELMLPESDLKKIREAKILREAMQD-REASLSRARREAAFA------------DGISWGMGEDAIEEPEDD 191          
BLAST of EWM21662.1 vs. NCBI_GenBank
Match: gi|147779651|emb|CAN71737.1| (hypothetical protein VITISV_011557 [Vitis vinifera])

HSP 1 Score: 127.872 bits (320), Expect = 7.073e-30
Identity = 88/235 (37.45%), Postives = 123/235 (52.34%), Query Frame = 0
Query:   21 ASASAQAPPHPNST----ISSAYMP---PSWGGRPSPSEPAVTLEVLRNGVEVDRLDLFASPTPSKPYVPADTASSQTPSSCQHYYTFGRLPGAVNFVLDNPTVSRVHAVCQFRKADGTLHVQDLGSTHGTYLNKQRLPPRSWESLHVGDILQFGQSTRLYVVSGPEVLGRPEVEDEKLEAYRTERAKVRAWREA---RRRKKEGLAAGQGPEEAGEEEGGISWGLGEDAEREEE 245
            AS S+   P  NST      SA +P   PSW   P  S     LEVL++G  +D+LD++                       +  Y FGR+    +FVL++PT+SR HAV QF++ +G  ++ DLGSTHGT+LNK ++  + +  LHVGD++ FG STRLYV  GP  L  PE + +K+   +  R  ++  REA   R R++   A             GISWG+GEDA  E E
Sbjct:  149 ASESSAMQPSNNSTHHQKTQSAAVPYTIPSWSEPPGHS---FYLEVLKDGSIIDQLDVYE----------------------KGAYMFGRV-DICDFVLEHPTISRFHAVLQFKR-NGAAYLYDLGSTHGTFLNKSQVKKKVYTELHVGDVIXFGLSTRLYVFQGPTELMLPESDLKKIREAKILREAMQD-REASLSRARREAAFA------------DGISWGMGEDAIEEPE 343          
BLAST of EWM21662.1 vs. NCBI_GenBank
Match: gi|1142845009|gb|AQL03095.1| (SMAD/FHA domain-containing protein [Zea mays])

HSP 1 Score: 124.79 bits (312), Expect = 7.763e-30
Identity = 78/215 (36.28%), Postives = 116/215 (53.95%), Query Frame = 0
Query:   39 YMPPSWGGRPSPSEPAVTLEVLRNGVEVDRLDLFASPTPSKPYVPADTASSQTPSSCQHYYTFGRLPGAVNFVLDNPTVSRVHAVCQFRKADGTLHVQDLGSTHGTYLNKQRLPPRSWESLHVGDILQFGQSTRLYVVSGPEVLGRPEVEDEKLEAYRTERAKVRAWREA---RRRKKEGLAAGQGPEEAGEEEGGISWGLGEDAEREEEEEEVE 250
            Y  P W    +PS+P   LEVL++G  VD+LD+                      S +  Y FGR+    +FVL++PT+SR HAV QFR  DG + + DLGSTHG+++NK  +  + +  +HVGD+++FGQS+RLY+  GP  L  PE + +KL   R ++  +   REA   R + +  LA             GISWG+ +DA  E  E++ +
Sbjct:  132 YAIPEWS--TAPSQP-FFLEVLKDGTIVDQLDV----------------------SKKGAYMFGRID-LCDFVLEHPTISRFHAVLQFRN-DGKVFLFDLGSTHGSFINKNLIKKKLYTEIHVGDVIRFGQSSRLYIFQGPSELMPPEKDLQKLRDARIQQDMLD--REASILRAKTQAALAE------------GISWGMTDDAIEESAEDDAD 305          
BLAST of EWM21662.1 vs. NCBI_GenBank
Match: gi|1002860906|ref|XP_015694339.1| (PREDICTED: kanadaptin [Oryza brachyantha])

HSP 1 Score: 125.946 bits (315), Expect = 3.596e-29
Identity = 78/215 (36.28%), Postives = 117/215 (54.42%), Query Frame = 0
Query:   39 YMPPSWGGRPSPSEPAVTLEVLRNGVEVDRLDLFASPTPSKPYVPADTASSQTPSSCQHYYTFGRLPGAVNFVLDNPTVSRVHAVCQFRKADGTLHVQDLGSTHGTYLNKQRLPPRSWESLHVGDILQFGQSTRLYVVSGPEVLGRPEVEDEKLEAYRTERAKVRAWREA---RRRKKEGLAAGQGPEEAGEEEGGISWGLGEDAEREEEEEEVE 250
            Y  P W    +P  P   LEVL++G  VD+LD+                      S +  Y FGR+    +FVL++PT+SR HAV QFR +DG + + DLGSTHG+++NK ++  +++  +HVGD+++FGQS+RLY+  GP  L  PE + +KL   R ++  +   REA   R + +  LA             GISWG+ EDA  +  E+E +
Sbjct:   68 YAIPDWSA--APGHPFF-LEVLKDGTIVDKLDV----------------------SRKGAYMFGRID-LCDFVLEHPTISRFHAVLQFR-SDGEVFLYDLGSTHGSFINKTQVKKKTYVEIHVGDVIRFGQSSRLYIFQGPTELMPPEKDMQKLRDARIKQDMLD--REASLLRAKNQAALAE------------GISWGMSEDAVEDSAEDEAD 241          
The following BLAST results are available for this feature:
BLAST of EWM21662.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101923|gb|EWM21662.1|0.000e+0100.00adaptor protein kanadaptin, partial [Nannochlorops... [more]
gi|1025047467|ref|XP_016446761.1|3.810e-3237.80PREDICTED: kanadaptin-like [Nicotiana tabacum][more]
gi|659111073|ref|XP_008455566.1|9.354e-3135.34PREDICTED: kanadaptin [Cucumis melo][more]
gi|731418089|ref|XP_002278556.2|9.935e-3136.69PREDICTED: kanadaptin [Vitis vinifera][more]
gi|1083892781|ref|XP_018631506.1|1.255e-3037.80PREDICTED: kanadaptin isoform X3 [Nicotiana toment... [more]
gi|1083892779|ref|XP_018631505.1|1.598e-3037.80PREDICTED: kanadaptin isoform X2 [Nicotiana toment... [more]
gi|298204430|emb|CBI16910.3|4.415e-3037.22unnamed protein product, partial [Vitis vinifera][more]
gi|147779651|emb|CAN71737.1|7.073e-3037.45hypothetical protein VITISV_011557 [Vitis vinifera... [more]
gi|1142845009|gb|AQL03095.1|7.763e-3036.28SMAD/FHA domain-containing protein [Zea mays][more]
gi|1002860906|ref|XP_015694339.1|3.596e-2936.28PREDICTED: kanadaptin [Oryza brachyantha][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9041rna9041Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications