EWM21663.1, cds9010 (CDS) Nannochloropsis gaditana

Overview
NameEWM21663.1
Unique Namecds9010
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:182183..182317 -
Alignment locationKK037251.1:181750..181850 -
Alignment locationKK037251.1:181465..181633 -
Alignment locationKK037251.1:181235..181331 -
Alignment locationKK037251.1:180909..181120 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21663.1
Productbeta-lactamase
Orig transcript idgnl|cribi|Naga_101157g1.4157.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:182183..182317 -
KK037251.1supercontigKK037251.1:181750..181850 -
KK037251.1supercontigKK037251.1:181465..181633 -
KK037251.1supercontigKK037251.1:181235..181331 -
KK037251.1supercontigKK037251.1:180909..181120 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR001466Beta-lactam-related
IPR012338Beta-lactam/transpept-like
Homology
BLAST of EWM21663.1 vs. NCBI_GenBank
Match: gi|585101924|gb|EWM21663.1| (beta-lactamase [Nannochloropsis gaditana])

HSP 1 Score: 483.026 bits (1242), Expect = 1.674e-172
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0
Query:    1 MGGGTWTNAVAPFVLLAFAILGEGAPHRWTQAPATPYSMPYAYPQEVGVSNDITGRLQPLLDKLTAERKVPGSVVMMARHGKIILEQWSGYDNPHYIFRLFSQSKPITAAATLICVDDELFSLEDPIVKFIPEFRTLRVIVNATQGAAIETTPLRREITIRHLLTHTGGFVYGDGGDTVVDEMYRAAKVLDLWGQDMDGQEREGGREGGREGGRVGRGRGTEGGAEGRRGRREVTLK 237
            MGGGTWTNAVAPFVLLAFAILGEGAPHRWTQAPATPYSMPYAYPQEVGVSNDITGRLQPLLDKLTAERKVPGSVVMMARHGKIILEQWSGYDNPHYIFRLFSQSKPITAAATLICVDDELFSLEDPIVKFIPEFRTLRVIVNATQGAAIETTPLRREITIRHLLTHTGGFVYGDGGDTVVDEMYRAAKVLDLWGQDMDGQEREGGREGGREGGRVGRGRGTEGGAEGRRGRREVTLK
Sbjct:    1 MGGGTWTNAVAPFVLLAFAILGEGAPHRWTQAPATPYSMPYAYPQEVGVSNDITGRLQPLLDKLTAERKVPGSVVMMARHGKIILEQWSGYDNPHYIFRLFSQSKPITAAATLICVDDELFSLEDPIVKFIPEFRTLRVIVNATQGAAIETTPLRREITIRHLLTHTGGFVYGDGGDTVVDEMYRAAKVLDLWGQDMDGQEREGGREGGREGGRVGRGRGTEGGAEGRRGRREVTLK 237          
BLAST of EWM21663.1 vs. NCBI_GenBank
Match: gi|1180611654|ref|WP_084097290.1| (serine hydrolase [Cyclobacterium lianum])

HSP 1 Score: 116.701 bits (291), Expect = 8.117e-27
Identity = 72/190 (37.89%), Postives = 105/190 (55.26%), Query Frame = 0
Query:   13 FVLLAFAILGEGAPHRWTQAPATPYSMPYAYPQEVGVSNDITGRLQPLLDKLTAERKVPGSVVMMARHGKIILEQWSGYDNPH-------YIFRLFSQSKPITAAATLICVDDELFSLEDPIVKFIPEFRTLRVIVNATQGAAIETT-PLRREITIRHLLTHTGGFVYG-DGGDTVVDEMYRAAKVLDLW 193
            F L++FAI+   A     Q   +P+ +    P+ VG+S++   R+  +L +  A+  +PG+V ++ R+GKI+  Q  G  N          IFR+ SQSK IT+ A ++  ++  F L+DPI K+IPEF+   V+VN        TT P  REITIRHLLTHT G  YG   GD  +  +Y  A   DL+
Sbjct:   10 FWLISFAIIQSNAQTNSQQK--SPF-LTTGNPESVGMSSERLDRVDAMLQEAVADNTIPGAVALIVRNGKIVFHQAYGQANAEGKELRKDAIFRIASQSKAITSTAVMMLWEEGKFQLDDPISKYIPEFKNPEVLVNFRYADTTYTTRPAEREITIRHLLTHTSGLGYGVIDGDERMKMIYHKAGTTDLF 196          
BLAST of EWM21663.1 vs. NCBI_GenBank
Match: gi|1110437587|emb|SHN12268.1| (CubicO group peptidase, beta-lactamase class C family [Cyclobacterium lianum])

HSP 1 Score: 116.316 bits (290), Expect = 1.186e-26
Identity = 72/190 (37.89%), Postives = 105/190 (55.26%), Query Frame = 0
Query:   13 FVLLAFAILGEGAPHRWTQAPATPYSMPYAYPQEVGVSNDITGRLQPLLDKLTAERKVPGSVVMMARHGKIILEQWSGYDNPH-------YIFRLFSQSKPITAAATLICVDDELFSLEDPIVKFIPEFRTLRVIVNATQGAAIETT-PLRREITIRHLLTHTGGFVYG-DGGDTVVDEMYRAAKVLDLW 193
            F L++FAI+   A     Q   +P+ +    P+ VG+S++   R+  +L +  A+  +PG+V ++ R+GKI+  Q  G  N          IFR+ SQSK IT+ A ++  ++  F L+DPI K+IPEF+   V+VN        TT P  REITIRHLLTHT G  YG   GD  +  +Y  A   DL+
Sbjct:   27 FWLISFAIIQSNAQTNSQQK--SPF-LTTGNPESVGMSSERLDRVDAMLQEAVADNTIPGAVALIVRNGKIVFHQAYGQANAEGKELRKDAIFRIASQSKAITSTAVMMLWEEGKFQLDDPISKYIPEFKNPEVLVNFRYADTTYTTRPAEREITIRHLLTHTSGLGYGVIDGDERMKMIYHKAGTTDLF 213          
BLAST of EWM21663.1 vs. NCBI_GenBank
Match: gi|1200484106|gb|OUV98859.1| (hypothetical protein CBD16_09325 [Betaproteobacteria bacterium TMED156])

HSP 1 Score: 115.931 bits (289), Expect = 1.333e-26
Identity = 68/183 (37.16%), Postives = 102/183 (55.74%), Query Frame = 0
Query:   34 ATPYSMPYAYPQEVGVSNDITGRLQPLLDKLTAERKVPGSVVMMARHGKIILEQWSGYDNPH--------YIFRLFSQSKPITAAATLICVDDELFSLEDPIVKFIPEFRTLRVIVN---ATQGAAIETTPLRREITIRHLLTHTGGFVYG----DGGDTVVDEMYRAAKVLDLWGQDMDGQE 201
            A P++     P+ +GVS++   R+  + +K  +E+K+PG VV++ R GKII  +  G  +P          IFR+FS +KPIT+  TL+ V+     L DP+ K++PE + +RV VN   A   AAI+T P +  I I  LL HT GF YG      G  VV++MY  A + D   Q++  +E
Sbjct:   20 AFPHNFETVKPELLGVSSERLNRITDVFNKKISEKKIPGYVVLVMRSGKIIFHKAEGKQDPQKNSKMSKESIFRIFSMTKPITSIGTLMLVEQGKIKLTDPVAKYLPELKNMRVAVNQNTAKSAAAIKTKPAKNSIRIIDLLRHTAGFTYGYFKAYPGGGVVEQMYIDAGMHD---QNISNKE 199          
BLAST of EWM21663.1 vs. NCBI_GenBank
Match: gi|739461511|ref|WP_037321460.1| (serine hydrolase [Salegentibacter sp. Hel_I_6])

HSP 1 Score: 114.775 bits (286), Expect = 3.441e-26
Identity = 64/177 (36.16%), Postives = 104/177 (58.76%), Query Frame = 0
Query:   31 QAPATPYS--MPYAYPQEVGVSNDITGRLQPLLDKLTAERKVPGSVVMMARHGKIILEQWSGYDNPH-------YIFRLFSQSKPITAAATLICVDDELFSLEDPIVKFIPEFRTLRVIVNATQG-AAIETTPLRREITIRHLLTHTGGFVYGD-GGDTVVDEMYRAAKVLDLWGQD 196
            Q P+   S  +  A P EVG+S++   +++ +L     E+++PG+VV++AR GKI+  +  G  N          IFRL SQ+K ITA A ++  ++  F L+DPI K+IPEF+  +++ N  +  ++  +TP   EITIRHLLTHT G  YG    D  + ++Y  A + +L+ ++
Sbjct:   23 QTPSVNNSGTLQSAAPAEVGMSSERIQKIEEMLQSAIEEKQIPGAVVLIARDGKIVFHEAYGEANASGKKLAKDAIFRLASQTKAITATAVMMLWEEGKFRLDDPISKYIPEFKDPKILKNFNEADSSFTSTPAENEITIRHLLTHTSGLGYGAIDSDERIKKIYAKAGITELFTEE 199          
BLAST of EWM21663.1 vs. NCBI_GenBank
Match: gi|1147711509|gb|AQQ75278.1| (hypothetical protein, partial [uncultured bacterium])

HSP 1 Score: 112.079 bits (279), Expect = 8.285e-26
Identity = 57/164 (34.76%), Postives = 97/164 (59.15%), Query Frame = 0
Query:   39 MPYAYPQEVGVSNDITGRLQPLLDKLTAERKVPGSVVMMARHGKIILEQWSGYDNPH--------YIFRLFSQSKPITAAATLICVDDELFSLEDPIVKFIPEFRTLRVIVN----ATQGAAIETTPLRREITIRHLLTHTGGFVYGDGGDTVVDEMYRAAKVL 190
            +P   P+EVG+++     ++ ++++  AE+++PG++ ++AR GKI  ++  G  +           I R++S SKPIT+ A ++  ++  F L DP+ K++PEF  ++V +      T    ++T P +R IT+R LL HT G  YG  GDT+VD  YR AK+L
Sbjct:   35 LPAVAPEEVGMASSRLAHIRSVMNRHVAEKRIPGAIGLIARRGKIAYQETFGMADVEAGKPMRIDTIHRIYSMSKPITSVAVMMLYEEGKFQLNDPVAKYLPEFAKMQVGIEEKDPQTGNLTLKTAPAKRPITVRDLLRHTAGLTYGVFGDTLVDREYRKAKIL 198          
BLAST of EWM21663.1 vs. NCBI_GenBank
Match: gi|1147711501|gb|AQQ75272.1| (hypothetical protein, partial [uncultured bacterium])

HSP 1 Score: 111.694 bits (278), Expect = 8.638e-26
Identity = 57/164 (34.76%), Postives = 97/164 (59.15%), Query Frame = 0
Query:   39 MPYAYPQEVGVSNDITGRLQPLLDKLTAERKVPGSVVMMARHGKIILEQWSGYDNPHY--------IFRLFSQSKPITAAATLICVDDELFSLEDPIVKFIPEFRTLRVIVN----ATQGAAIETTPLRREITIRHLLTHTGGFVYGDGGDTVVDEMYRAAKVL 190
            +P   P+EVG+++     ++ ++++  AE+++PG++ ++AR GKI  ++  G  +           I R++S SKPIT+ A ++  ++  F L DP+ K++PEF  ++V +      T    ++T P +R IT+R LL HT G  YG  GDT+VD  YR AK+L
Sbjct:   35 LPAVAPEEVGMASSRLAHIRSVMNRHVAEKRIPGAIGLIARRGKIAYQETFGMADVETGKPMRIDTIHRIYSMSKPITSVAVMMLYEEGKFQLNDPVAKYLPEFAKMQVGIEEKDPQTGNLTLKTAPAKRPITVRDLLRHTAGLTYGVFGDTLVDREYRKAKIL 198          
BLAST of EWM21663.1 vs. NCBI_GenBank
Match: gi|1073660195|ref|WP_070055319.1| (serine hydrolase [Salegentibacter salarius] >gi|1073504888|gb|OEY71452.1| serine hydrolase [Salegentibacter salarius] >gi|1158454858|emb|SLJ91530.1| CubicO group peptidase, beta-lactamase class C family [Salegentibacter salarius])

HSP 1 Score: 113.235 bits (282), Expect = 1.410e-25
Identity = 60/168 (35.71%), Postives = 100/168 (59.52%), Query Frame = 0
Query:   38 SMPYAYPQEVGVSNDITGRLQPLLDKLTAERKVPGSVVMMARHGKIILEQWSGYDNPH-------YIFRLFSQSKPITAAATLICVDDELFSLEDPIVKFIPEFRTLRVIVNATQG-AAIETTPLRREITIRHLLTHTGGFVYGD-GGDTVVDEMYRAAKVLDLWGQD 196
            ++  A P EVG+S++   +++ +L     E ++PG+V ++AR GKI+  +  G  N          IFRL SQ+K ITA A ++  ++  F L+DP+ K+IPEF+  +++ N  +  ++  +TP   EITIRHLLTHT G  YG   GD  + ++Y  A + +L+ ++
Sbjct:   32 TLESATPAEVGMSSERIQKIEEMLQSAIEENQIPGAVALIARDGKIVFHEAYGEANASRKELEKDAIFRLASQTKAITATAVMMLWEEGKFRLDDPVSKYIPEFKDPKILKNFNEADSSFTSTPAENEITIRHLLTHTSGLGYGAIDGDERIKKIYAKAGITELFTEE 199          
BLAST of EWM21663.1 vs. NCBI_GenBank
Match: gi|1056719150|ref|WP_068143571.1| (hypothetical protein [Kordiimonas lipolytica])

HSP 1 Score: 112.464 bits (280), Expect = 2.246e-25
Identity = 59/173 (34.10%), Postives = 94/173 (54.34%), Query Frame = 0
Query:   29 WTQAPATPYSMPYAYPQEVGVSNDITGRLQPLLDKLTAERKVPGSVVMMARHGKIILEQWSGYDN----------PHYIFRLFSQSKPITAAATLICVDDELFSLEDPIVKFIPEFRTLRVIVNATQGAAIETTPLRREITIRHLLTHTGGFVYGDGGDTVVDEMYRAAKVLD 191
            W+  P     MP A P++VG+S  +   +    D    E K+ G   ++ARHGK++   +  Y +           + IFR++S +KP+T  A ++  ++  FSL+DP+  ++PEF   RV  +  +   +ET P +REITIR L+ HT G  YG   DT VD++Y+   VL+
Sbjct:   14 WSVMPTEAADMPTAAPEDVGLSATVLDDMTRHFDAYVREGKLTGLTTLVARHGKVV--HFKAYGDRKLASDVALGKNDIFRIYSMTKPVTGVALMMLYEEGRFSLDDPVGAYLPEFAGARVFKSEREDGTVETVPAKREITIRDLMRHTAGLTYGLFADTPVDKLYQKNGVLE 184          
BLAST of EWM21663.1 vs. NCBI_GenBank
Match: gi|760868912|dbj|BAQ46508.1| (beta-lactamase [Methylobacterium aquaticum])

HSP 1 Score: 112.079 bits (279), Expect = 2.592e-25
Identity = 59/150 (39.33%), Postives = 88/150 (58.67%), Query Frame = 0
Query:   44 PQEVGVSNDITGRLQPLLDKLTAERKVPGSVVMMARHGKIILEQWSGYDN--------PHYIFRLFSQSKPITAAATLICVDDELFSLEDPIVKFIPEFRTLRVIVNATQGAAIETTPLRREITIRHLLTHTGGFVYGDGGDTVVDEMYR 185
            P+ VG+S++  GR+ P +       K+PG  V +AR G+++     G  +           I R++S +KP+T+ A L+  ++ LF L+DPI +F+PEFR +RV+V  ++G   ET P  R+IT R LLTHT G  YG    T+VD MYR
Sbjct:    8 PEAVGLSSERLGRIVPWMRGYVEAGKLPGLSVTVARRGQVVFSHQEGLRDLARGLPMEADTIVRIYSMTKPLTSVAILMLYEEGLFQLDDPITRFLPEFRDMRVLVGGSRGKP-ETVPAERDITFRDLLTHTSGLSYGFMDATLVDRMYR 156          
The following BLAST results are available for this feature:
BLAST of EWM21663.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101924|gb|EWM21663.1|1.674e-172100.00beta-lactamase [Nannochloropsis gaditana][more]
gi|1180611654|ref|WP_084097290.1|8.117e-2737.89serine hydrolase [Cyclobacterium lianum][more]
gi|1110437587|emb|SHN12268.1|1.186e-2637.89CubicO group peptidase, beta-lactamase class C fam... [more]
gi|1200484106|gb|OUV98859.1|1.333e-2637.16hypothetical protein CBD16_09325 [Betaproteobacter... [more]
gi|739461511|ref|WP_037321460.1|3.441e-2636.16serine hydrolase [Salegentibacter sp. Hel_I_6][more]
gi|1147711509|gb|AQQ75278.1|8.285e-2634.76hypothetical protein, partial [uncultured bacteriu... [more]
gi|1147711501|gb|AQQ75272.1|8.638e-2634.76hypothetical protein, partial [uncultured bacteriu... [more]
gi|1073660195|ref|WP_070055319.1|1.410e-2535.71serine hydrolase [Salegentibacter salarius] >gi|10... [more]
gi|1056719150|ref|WP_068143571.1|2.246e-2534.10hypothetical protein [Kordiimonas lipolytica][more]
gi|760868912|dbj|BAQ46508.1|2.592e-2539.33beta-lactamase [Methylobacterium aquaticum][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9040rna9040Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications