EWM29766.1, cds901 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29766.1 vs. NCBI_GenBank
Match: gi|585112346|gb|EWM29766.1| (Aminotransferase, class IV [Nannochloropsis gaditana]) HSP 1 Score: 783.482 bits (2022), Expect = 0.000e+0 Identity = 382/382 (100.00%), Postives = 382/382 (100.00%), Query Frame = 0
Query: 1 MRGVRGQCTAPKAVSQGLEGSVVNERAIWTLVTFSWLVAVLRTASVFPGRAQPRSDSSSGLRARGRLPMAAYTEARVLIRASCTSTIFAVCSHEDSKTFLERHSRGAYTTARTVRGSKIFVLDAHVKRLSETAMLMWPDQALLADIVEPSRLRAVVMKALRVAIEHHRSSHKPLGGQASISQEELKLTILFVWHTEDSMLECLYHVSQLPLRPSPPIKVEVRGAPRSNAKAKDSGWVRERKRLEYLKPVDTNEILLRDVDGALLEGTQTNFYVVMEGKLWTAGEGVLEGTVRKLVLEACAAHHIPVILHPPPNLKDLQRWEGALLSSTSRLLLPIDWIGIPQETKSFQEGDVCRAFKYENDCLTSRLVEWVDDNILQSSVDI 382
MRGVRGQCTAPKAVSQGLEGSVVNERAIWTLVTFSWLVAVLRTASVFPGRAQPRSDSSSGLRARGRLPMAAYTEARVLIRASCTSTIFAVCSHEDSKTFLERHSRGAYTTARTVRGSKIFVLDAHVKRLSETAMLMWPDQALLADIVEPSRLRAVVMKALRVAIEHHRSSHKPLGGQASISQEELKLTILFVWHTEDSMLECLYHVSQLPLRPSPPIKVEVRGAPRSNAKAKDSGWVRERKRLEYLKPVDTNEILLRDVDGALLEGTQTNFYVVMEGKLWTAGEGVLEGTVRKLVLEACAAHHIPVILHPPPNLKDLQRWEGALLSSTSRLLLPIDWIGIPQETKSFQEGDVCRAFKYENDCLTSRLVEWVDDNILQSSVDI
Sbjct: 1 MRGVRGQCTAPKAVSQGLEGSVVNERAIWTLVTFSWLVAVLRTASVFPGRAQPRSDSSSGLRARGRLPMAAYTEARVLIRASCTSTIFAVCSHEDSKTFLERHSRGAYTTARTVRGSKIFVLDAHVKRLSETAMLMWPDQALLADIVEPSRLRAVVMKALRVAIEHHRSSHKPLGGQASISQEELKLTILFVWHTEDSMLECLYHVSQLPLRPSPPIKVEVRGAPRSNAKAKDSGWVRERKRLEYLKPVDTNEILLRDVDGALLEGTQTNFYVVMEGKLWTAGEGVLEGTVRKLVLEACAAHHIPVILHPPPNLKDLQRWEGALLSSTSRLLLPIDWIGIPQETKSFQEGDVCRAFKYENDCLTSRLVEWVDDNILQSSVDI 382
BLAST of EWM29766.1 vs. NCBI_GenBank
Match: gi|926788037|ref|XP_013902492.1| (hypothetical protein MNEG_4482 [Monoraphidium neglectum] >gi|761973184|gb|KIZ03473.1| hypothetical protein MNEG_4482 [Monoraphidium neglectum]) HSP 1 Score: 181.415 bits (459), Expect = 7.243e-50 Identity = 126/328 (38.41%), Postives = 174/328 (53.05%), Query Frame = 0
Query: 90 VCSHEDSKTFLERHSRGAYTTARTV--RGSKIFVLDAHVKRLSETAMLMWPDQALLADIVEPS-------RLRAVVMKALRVAIEHHRSSHKPLGGQASISQ---------------------------EELKLTILFVWHTEDS-MLECLYHVSQLPLRPSPPIKVEVRGAPRSNAKAKDSGWVRERKRLEYLKPVDTNEILLRDVDGALLEGTQTNFYVVMEGKLWTAGEGVLEGTVRKLVLEACAAHHIPVILHPPPNLKDLQRWEGALLSSTSRLLLPID-WIGIPQETKSFQEGDVCRAFKYENDCLTSRLVEWVDDNILQSS 379
CS + + +L+ RGAYTTARTV G+++ L +H+ RL+ +A LM + L P+ +LR V++ + I RS G Q+S +LKLT+L W E + + H LP RP PP+K++ RG PRSNA+AKDS WVR+R+ LE KP D NE++L DG LLEG +NF+ + G + TA EGVL GT+R++VLEAC+ +PV L PP + D++ W+GA +SSTSRLLLP D + PQ + D RAF E L RL V + IL+ S
Sbjct: 50 ACS-QGAGAWLQAAPRGAYTTARTVGDDGARVLKLASHISRLALSASLMAAADSQLVTSEAPAPPSFTAEQLRPRVLQCMGAVIAAFRSGVCAGGLQSSADSGAPGFQQQAQQQQQQQQQQQQQQQQQRRQLKLTLLMTWGDESAESFDLWCHGEALPPRPRPPVKLQFRGLPRSNARAKDSEWVRQRRALEQAKPTDVNEVVLGTPDGDLLEGLSSNFFALHRGVVVTADEGVLSGTIREIVLEACSEVGVPVRLE-PPRMSDIEEWQGAFISSTSRLLLPADELLWAPQGDAGLEGPDRVRAFG-EQHPLVRRLEAAVAERILRDS 374
BLAST of EWM29766.1 vs. NCBI_GenBank
Match: gi|566015418|gb|ETI38329.1| (hypothetical protein F443_15926 [Phytophthora parasitica P1569] >gi|568040914|gb|ETM38343.1| hypothetical protein L914_15341 [Phytophthora parasitica]) HSP 1 Score: 170.629 bits (431), Expect = 1.532e-46 Identity = 111/278 (39.93%), Postives = 156/278 (56.12%), Query Frame = 0
Query: 69 MAAYTEARVLIRASCTSTIFAVCSHEDSKTFLERHSRGAYTTARTVRGSKIFVLDAHVKRLSETAMLMWPDQALLADIVEPS---RLRAVVMKALRVAIEHHRSSHKPLGGQASISQ-EELKLTILFVWHTEDSMLE--------CLYHVSQLPLRPSPPIKVEVRGAPRSNAKAKDSGWVRERKRLEYLKPVDTNEILLRD-VDGALLEGTQTNFYVVMEGKLWTAGEGVLEGTVRKLVLEACAAHHIPVILHPPPNLKDLQRWEGALLSSTSRLLL 333
MAA + L+ A+ + + C D+ FL H RGAYT ARTV +KIF DAH++RL E+ ++M ++ L+++ VE R A ++ A+ G + + +E K+ +L V TE ++ E HV LP S +K+EV G PR NA AKDS WVRERK + D E++L D LLEG+QTNFY + +G ++TA EG+L+GTVR LVLE C + IPV L PP L D+ +W+G +SSTSRL+L
Sbjct: 1 MAARQAEKKLLVAAAKNGLAIPCDL-DATAFLLAHPRGAYTAARTVLQTKIFDYDAHIRRLVESTVVMQSEKQLISNAVEKELRPRTEATIIAAMTA-----------FKGLYEVQKDQEYKINVL-VCPTEGNIGEGEVLADTDVYCHVGFLPPLRSEMVKLEVAGLPRHNAVAKDSAWVRERKAIYDRMAPDMEEVILMDPATRHLLEGSQTNFYTIQDGAVYTAEEGILKGTVRSLVLEVCEENGIPVKLS-PPTLDDVDKWQGCFISSTSRLVL 264
BLAST of EWM29766.1 vs. NCBI_GenBank
Match: gi|567952860|gb|ETK78523.1| (hypothetical protein L915_15480 [Phytophthora parasitica] >gi|567981511|gb|ETL31949.1| hypothetical protein L916_15375 [Phytophthora parasitica] >gi|568011001|gb|ETL85179.1| hypothetical protein L917_15200 [Phytophthora parasitica] >gi|570319150|gb|ETO67098.1| hypothetical protein F444_15909 [Phytophthora parasitica P1976] >gi|570942953|gb|ETP08210.1| hypothetical protein F441_15763 [Phytophthora parasitica CJ01A1] >gi|570973719|gb|ETP36262.1| hypothetical protein F442_15770 [Phytophthora parasitica P10297] >gi|970651837|gb|KUF90599.1| Thioredoxin protein [Phytophthora nicotianae]) HSP 1 Score: 169.859 bits (429), Expect = 3.117e-46 Identity = 111/278 (39.93%), Postives = 155/278 (55.76%), Query Frame = 0
Query: 69 MAAYTEARVLIRASCTSTIFAVCSHEDSKTFLERHSRGAYTTARTVRGSKIFVLDAHVKRLSETAMLMWPDQALLADIVEPS---RLRAVVMKALRVAIEHHRSSHKPLGGQASISQ-EELKLTILFVWHTEDSMLE--------CLYHVSQLPLRPSPPIKVEVRGAPRSNAKAKDSGWVRERKRLEYLKPVDTNEILLRD-VDGALLEGTQTNFYVVMEGKLWTAGEGVLEGTVRKLVLEACAAHHIPVILHPPPNLKDLQRWEGALLSSTSRLLL 333
MAA + L+ A+ + + C D+ FL H RGAYT ARTV +KIF DAH++RL E+ ++M ++ L++ VE R A ++ A+ G + + +E K+ +L V TE ++ E HV LP S +K+EV G PR NA AKDS WVRERK + D E++L D LLEG+QTNFY + +G ++TA EG+L+GTVR LVLE C + IPV L PP L D+ +W+G +SSTSRL+L
Sbjct: 1 MAARQAEKKLLVAAAKNGLAIPCDL-DATAFLLAHPRGAYTAARTVLQTKIFDYDAHIRRLVESTVVMQSEKQLISSAVEKELRPRTEATIIAAMTA-----------FKGLYEVQKDQEYKINVL-VCPTEGNIGEGEVLADTDVYCHVGFLPPLRSEMVKLEVAGLPRHNAVAKDSAWVRERKAIYDRMAPDMEEVILMDPATRHLLEGSQTNFYTIQDGAVYTAEEGILKGTVRSLVLEVCEENGIPVKLS-PPTLDDVDKWQGCFISSTSRLVL 264
BLAST of EWM29766.1 vs. NCBI_GenBank
Match: gi|675173291|ref|XP_008895530.1| (hypothetical protein PPTG_04937 [Phytophthora parasitica INRA-310] >gi|568105063|gb|ETN19708.1| hypothetical protein PPTG_04937 [Phytophthora parasitica INRA-310]) HSP 1 Score: 169.474 bits (428), Expect = 8.331e-46 Identity = 111/278 (39.93%), Postives = 155/278 (55.76%), Query Frame = 0
Query: 69 MAAYTEARVLIRASCTSTIFAVCSHEDSKTFLERHSRGAYTTARTVRGSKIFVLDAHVKRLSETAMLMWPDQALLADIVEPS---RLRAVVMKALRVAIEHHRSSHKPLGGQASISQ-EELKLTILFVWHTEDSMLE--------CLYHVSQLPLRPSPPIKVEVRGAPRSNAKAKDSGWVRERKRLEYLKPVDTNEILLRD-VDGALLEGTQTNFYVVMEGKLWTAGEGVLEGTVRKLVLEACAAHHIPVILHPPPNLKDLQRWEGALLSSTSRLLL 333
MAA + L+ A+ + + C D+ FL H RGAYT ARTV +KIF DAH++RL E+ ++M ++ L++ VE R A ++ A+ G + + +E K+ +L V TE ++ E HV LP S +K+EV G PR NA AKDS WVRERK + D E++L D LLEG+QTNFY + +G ++TA EG+L+GTVR LVLE C + IPV L PP L D+ +W+G +SSTSRL+L
Sbjct: 32 MAARQAEKKLLVAAAKNGLAIPCDL-DATAFLLAHPRGAYTAARTVLQTKIFDYDAHIRRLVESTVVMQSEKQLISSAVEKELRPRTEATIIAAMTA-----------FKGLYEVQKDQEYKINVL-VCPTEGNIGEGEVLADTDVYCHVGFLPPLRSEMVKLEVAGLPRHNAVAKDSAWVRERKAIYDRMAPDMEEVILMDPATRHLLEGSQTNFYTIQDGAVYTAEEGILKGTVRSLVLEVCEENGIPVKLS-PPTLDDVDKWQGCFISSTSRLVL 295
BLAST of EWM29766.1 vs. NCBI_GenBank
Match: gi|695462762|ref|XP_009538536.1| (hypothetical protein PHYSODRAFT_353129 [Phytophthora sojae] >gi|348665847|gb|EGZ05675.1| hypothetical protein PHYSODRAFT_353129 [Phytophthora sojae]) HSP 1 Score: 172.17 bits (435), Expect = 5.740e-44 Identity = 109/282 (38.65%), Postives = 153/282 (54.26%), Query Frame = 0
Query: 69 MAAYTEARVLIRASCTSTIFAVCSHEDSKTFLERHSRGAYTTARTVRGSKIFVLDAHVKRLSETAMLMWPDQALLADIVEPS---RLRAVV---MKALRVAIEHHRSSHKPLGGQASISQEELKLTILFVWHTEDSM----------LECLYHVSQLPLRPSPPIKVEVRGAPRSNAKAKDSGWVRERKRLEYLKPVDTNEILLRD-VDGALLEGTQTNFYVVMEGKLWTAGEGVLEGTVRKLVLEACAAHHIPVILHPPPNLKDLQRWEGALLSSTSRLLL 333
MAA + L+ A+ + + C D+ FL H RGAYT ARTV+ +KIF +AH++RL ++ + M D+ L+ VE R A + M A + E H+ +E K+ +L D+ + HV LP S +K+EV G PR NA AKDS WVRERK + D E++L D LLEG+QTNFY + +G ++TA +G+L+GTVR LVLE CA + IPV L PP L D+++W+G +SSTSRL+L
Sbjct: 431 MAARQAEKKLLVAAAKNGLAIPCD-SDATAFLLAHPRGAYTAARTVQQTKIFDYEAHIRRLVDSTVAMQTDKQLVPSAVEKELRPRTEATLQAAMTAFKAQFEVHKD-------------QEYKINVLVCPSEGDTAGQGDGQVLADTDVFCHVGFLPPLRSEMVKLEVAGLPRHNAAAKDSAWVRERKAIYDRMAPDMEEVILMDPATRQLLEGSQTNFYAIQDGAVYTAEDGILKGTVRSLVLEVCAENGIPVKLS-PPTLDDVEKWQGCFISSTSRLVL 697
BLAST of EWM29766.1 vs. NCBI_GenBank
Match: gi|635371165|emb|CCI40821.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 163.696 bits (413), Expect = 7.996e-44 Identity = 105/268 (39.18%), Postives = 147/268 (54.85%), Query Frame = 0
Query: 91 CSHEDSKTFLERHSRGAYTTARTVRGSKIFVLDAHVKRLSETAMLMWP---DQALLAD--IVEPSRLRAVVMKALRVAIEHHRSSHKPLGGQASISQEELKLTILF---VWHTEDSMLECLYHVSQLPLRPSPPIKVEVRGAPRSNAKAKDSGWVRERKRLEYLKPVDTNEILLRDVDGA-LLEGTQTNFYVVMEGKLWTAGEGVLEGTVRKLVLEACAAHHIPVILHPPPNLKDLQRWEGALLSSTSRLLLPIDWIGIPQETKSFQE 349
C ++ F+ RGAYT+ARTV+ KIF D H++RL+++ M AL D +EP LR V K LRVA++ + + + + S +E KLTIL T L+ HV L +K+ V G PR N + KDS W+RER+ + P D EILL D + + EG+QTNFY + + K++TA EG+L GTVR L+LE C H IP+IL P L ++ W+ +SSTSRL+L +D + PQ T E
Sbjct: 17 CVSLNATEFILSQPRGAYTSARTVQQFKIFDYDHHIRRLAKSTAGMHGAVLKSALFDDETKLEP-YLREQVPKTLRVAMQEFQKNFR----NSLPSSQEYKLTILICVPATPTSKVPLDVFCHVGLLKSLNRNLVKLRVVGEPRVNGELKDSHWIRERQSIYEALPDDVEEILLMDRETTKIYEGSQTNFYAIQDNKVYTADEGILNGTVRSLILEECQKHSIPLILE-APRLSEVASWDACFISSTSRLVLGVDSVEYPQLTDDLAE 278
BLAST of EWM29766.1 vs. NCBI_GenBank
Match: gi|1214706383|gb|OWZ17934.1| (Thioredoxin [Phytophthora megakarya]) HSP 1 Score: 171.4 bits (433), Expect = 1.004e-43 Identity = 113/273 (41.39%), Postives = 153/273 (56.04%), Query Frame = 0
Query: 69 MAAYTEARVLIRASCTSTIFAVCSHEDSKTFLERHSRGAYTTARTVRGSKIFVLDAHVKRLSETAMLMWPDQALLADIVEPSRLRAVVMKALRVAIEHHRSSHKPLGGQASISQEELKLTILFVWHTEDSM-------LECLYHVSQLPLRPSPPIKVEVRGAPRSNAKAKDSGWVRERKRLEYLKPVDTNEILLRD-VDGALLEGTQTNFYVVMEGKLWTAGEGVLEGTVRKLVLEACAAHHIPVILHPPPNLKDLQRWEGALLSSTSRLLL 333
MA + LI A+ + + C D+ +FL H RGAYT ARTV +KIF +AHV+RL E+ + M ++ L VE LR + + A+ ++ H+ Q E K+ +L V +ED + + HV LP S +K+EV G PR NA AKDS WVRERK + D E++L D LLEG+QTNFYV+ EG + TA EG+L+GTVR LVLE C IPV L PP L D+++W+G +SSTSRL+L
Sbjct: 425 MAVRQAEKKLIVAAAKNGLAIPCD-VDATSFLLSHPRGAYTAARTVEQTKIFDYEAHVRRLVESTIAMQTEKQLSPSAVE-KELRPRTEETMIAAMAAFKTLHEVQKDQ------EYKINVL-VCPSEDKVDGQVLGDTDIFCHVGLLPPLRSEMVKLEVAGLPRHNAAAKDSAWVRERKAIYDRMAPDMEEVILMDPATRQLLEGSQTNFYVIQEGAVHTAEEGILKGTVRSLVLEVCEEIGIPVRLS-PPTLDDIEKWQGCFISSTSRLVL 687
BLAST of EWM29766.1 vs. NCBI_GenBank
Match: gi|301118432|ref|XP_002906944.1| (thioredoxin-like protein [Phytophthora infestans T30-4] >gi|262108293|gb|EEY66345.1| thioredoxin-like protein [Phytophthora infestans T30-4]) HSP 1 Score: 169.088 bits (427), Expect = 6.179e-43 Identity = 109/277 (39.35%), Postives = 152/277 (54.87%), Query Frame = 0
Query: 65 GRLPMAAYTEARVLIRASCTSTIFAVCSHEDSKTFLERHSRGAYTTARTVRGSKIFVLDAHVKRLSETAMLMWPDQALLADIVEPSRLRAVVMKALRVAIEHHRSSHKPLGGQASISQEELKLTILFVWHTEDSM-------LECLYHVSQLPLRPSPPIKVEVRGAPRSNAKAKDSGWVRERKRLEYLKPVDTNEILLRD-VDGALLEGTQTNFYVVMEGKLWTAGEGVLEGTVRKLVLEACAAHHIPVILHPPPNLKDLQRWEGALLSSTSRLLL 333
RLP E ++L+ A+ FA+ D+ FL H RGAYTTARTV +KIF +AH++RL E+ + M ++ L VE LR + A+ + ++ Q E K+ +L D + + HV LP S +K+EV G PR NA AKDS WV+ERK + D E++L D V LLEG+QTNFY + +G ++TA EG+L+GTVR LVL+ C + IPV L PP L D+ +W+G +SSTSRL+L
Sbjct: 417 ARLPRQV--EKKLLVAAAKNG--FAIPCDLDATAFLLTHPRGAYTTARTVLQTKIFDYEAHIRRLVESTIAMQSEKQLTPSAVE-KELRPRTEATIVAAMTAFKGLYEAQKNQ------EYKINVLVCPTEGDKVDGEVLADTDVFCHVGFLPPLRSGMVKLEVAGLPRHNAAAKDSAWVKERKAIYDRMAPDMEEVILMDPVTRHLLEGSQTNFYTIQDGAVYTAEEGILKGTVRSLVLDVCEENGIPVKL-TPPTLNDVDKWQGCFISSTSRLVL 681
BLAST of EWM29766.1 vs. NCBI_GenBank
Match: gi|552819176|ref|XP_005845359.1| (hypothetical protein CHLNCDRAFT_137177 [Chlorella variabilis] >gi|307105006|gb|EFN53257.1| hypothetical protein CHLNCDRAFT_137177 [Chlorella variabilis]) HSP 1 Score: 160.999 bits (406), Expect = 1.944e-42 Identity = 112/290 (38.62%), Postives = 154/290 (53.10%), Query Frame = 0
Query: 93 HEDSKTFLERHSRGAYTTARTVRGSKIFVLDAHVKRLSETAMLMWPDQALLADIVEPS-------RLRAVVMKALRVAIEHHRSSHKPLGGQASISQEELKLTILFVWHT-----------------------------------EDSMLECLYHVSQLPLRPSPPIKVEVRGAPRSNAKAKDSGWVRERKRLEYLKPVDTNEILLRDVDGALLEGTQTNFYVVMEGKLWTAGEGVLEGTVRKLVLEACAAHHIPVILHPPPNLKDLQRWEGALLSSTSRLLLPIDWIGI 340
+ S +LE RGAYTTARTV GS + L H++RL+ +A LM A A + RLR V+ A++ A+ +R++ G E++LT+L W E+ + L HVS LP RP+PP++V +RGAPR NA+AKDS WVR+R+ L + P E+LL GALLEG +NF+ V G + TAGEG+L GTVR++VL IPV+L PP L DL+ W+G ++STSRLLLP+D G+
Sbjct: 14 EQASGPWLEAAPRGAYTTARTVGGSSVLELSFHIQRLATSAGLMMEAAAGAASAPAAAAAAADVARLRPRVLAAMQAAVRGYRAASGDADG-------EVRLTVLVTWQACQAQDGQQEAAPPVAGAGAGNHGSSAAASPAGGAGEEGAFDVLVHVSALPPRPAPPVRVVMRGAPRHNAEAKDSEWVRQRRGLLHGLPPGVEEVLLVGEGGALLEGLSSNFFAVARGAVHTAGEGILAGTVREVVLAVARREGIPVVLE-PPRLADLEAWDGCFITSTSRLLLPVDEAGV 295 The following BLAST results are available for this feature:
BLAST of EWM29766.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|