EWM21704.1, cds8969 (CDS) Nannochloropsis gaditana

Overview
NameEWM21704.1
Unique Namecds8969
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:63176..63574 -
Alignment locationKK037251.1:62848..62940 -
Alignment locationKK037251.1:62544..62597 -
Alignment locationKK037251.1:62205..62315 -
Alignment locationKK037251.1:61896..61989 -
Alignment locationKK037251.1:61543..61683 -

Link to JBrowse

Properties
Property NameValue
Start range61543
Start range.
Protein idEWM21704.1
Productsodium bile acid cotransporter 7
Partialtrue
Orig transcript idgnl|cribi|Naga_101040g1.4027.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:63176..63574 -
KK037251.1supercontigKK037251.1:62848..62940 -
KK037251.1supercontigKK037251.1:62544..62597 -
KK037251.1supercontigKK037251.1:62205..62315 -
KK037251.1supercontigKK037251.1:61896..61989 -
KK037251.1supercontigKK037251.1:61543..61683 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR016833Put_Na-Bile_cotransptr
Homology
BLAST of EWM21704.1 vs. NCBI_GenBank
Match: gi|585102011|gb|EWM21704.1| (sodium bile acid cotransporter 7, partial [Nannochloropsis gaditana])

HSP 1 Score: 590.497 bits (1521), Expect = 0.000e+0
Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 0
Query:    1 MVLRSFSLSLVLLLPLLFHVRHCPHATTVASMHTPTSDASAFSGPPFLPRQRLVNIRSITKARGAHVAPAYRVVSASLSPVHASHLPNCRGGGEATGFRLRPALRRLTSSIIRKHFLVTGMVIAIVLARYNPHFGRIGGPLAPEWTVNTVGVSVIFLLSGLSLQLQELTSAAKDFKLNAAIQAFNLGAGPLLGLAFQPLLIFAGVDARLATGLLIVSCLPTTVNMCIVLSGAAGASLALAVFNAVLSNFLGVFVAPATIFACVGAQTINVPYVAVIKKLVYKVGREERREGEKRGRE 297
            MVLRSFSLSLVLLLPLLFHVRHCPHATTVASMHTPTSDASAFSGPPFLPRQRLVNIRSITKARGAHVAPAYRVVSASLSPVHASHLPNCRGGGEATGFRLRPALRRLTSSIIRKHFLVTGMVIAIVLARYNPHFGRIGGPLAPEWTVNTVGVSVIFLLSGLSLQLQELTSAAKDFKLNAAIQAFNLGAGPLLGLAFQPLLIFAGVDARLATGLLIVSCLPTTVNMCIVLSGAAGASLALAVFNAVLSNFLGVFVAPATIFACVGAQTINVPYVAVIKKLVYKVGREERREGEKRGRE
Sbjct:    1 MVLRSFSLSLVLLLPLLFHVRHCPHATTVASMHTPTSDASAFSGPPFLPRQRLVNIRSITKARGAHVAPAYRVVSASLSPVHASHLPNCRGGGEATGFRLRPALRRLTSSIIRKHFLVTGMVIAIVLARYNPHFGRIGGPLAPEWTVNTVGVSVIFLLSGLSLQLQELTSAAKDFKLNAAIQAFNLGAGPLLGLAFQPLLIFAGVDARLATGLLIVSCLPTTVNMCIVLSGAAGASLALAVFNAVLSNFLGVFVAPATIFACVGAQTINVPYVAVIKKLVYKVGREERREGEKRGRE 297          
BLAST of EWM21704.1 vs. NCBI_GenBank
Match: gi|223993025|ref|XP_002286196.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977511|gb|EED95837.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 130.183 bits (326), Expect = 3.444e-31
Identity = 85/226 (37.61%), Postives = 128/226 (56.64%), Query Frame = 0
Query:   61 KARGAHVAPAYRVVSASLSPVHASHLPNCRGGGEATGFRLRPALRRLTSSIIRKHFLVTGMVIAIVLARYNPHFGRIGGPLAPEWTVNTVGVSVIFLLSGLSLQLQELTSAAKDFKLNAAIQAFNLGAGPLLGLAFQPLL---IFAGVDARLATGLLIVSCLPTTVNMCIVLSGAAGASLALAVFNAVLSNFLGVFVAPATIFACVGAQTINVPYVAVIKKLVYKV 283
             A GA   PA       L+   A  L   RGG      R   ++    ++ +  +F + GMV+A+         G+ G  + PE  +   GV+VIFLLSG+SL+L+ELT AA + KLN  IQ    GA PL GLA    +   + + +   L  GLLI++CLPTT+NMCI+L+ A+G ++A A+ N V+SN  G+F+ PA +    G ++I +P++ +++KLV KV
Sbjct:   44 NASGARWKPATLFAVRDLTEGAAVSL---RGGD-----RSYKSIVERANAFVSNNFFLIGMVVAVAGEAVRGVDGKNGSIVRPELFIGKYGVTVIFLLSGISLKLEELTKAASNVKLNGLIQTMTFGAFPLAGLAITTTIERFLPSLLPKSLLDGLLIMTCLPTTINMCILLTSASGGNVATALCNTVISNMAGIFITPALLLQFFG-KSIELPFLDLVRKLVNKV 260          
BLAST of EWM21704.1 vs. NCBI_GenBank
Match: gi|1129173809|gb|OLP83069.1| (Sodium/bile acid cotransporter 7 [Symbiodinium microadriaticum])

HSP 1 Score: 123.25 bits (308), Expect = 1.342e-27
Identity = 82/199 (41.21%), Postives = 119/199 (59.80%), Query Frame = 0
Query:   89 CRGGGEATGFRLRPALRRLTSSIIRKHFLVTGMVIAIVLARYNPHFGRIGGPLAPEWTVNTVGVSVIFLLSGLSLQLQELTSAAKDFKLNAAIQAFNLGAGPLLGLAFQPLLIFA----GVDARLATGLLIVSCLPTTVNMCIVLSGAAGASLALAVFNAVLSNFLGVFVAPATIFACVGAQTINVPYVAVIKKLVYKV 283
            CR G  ++  +    LR L S +    FLV GM++A++LAR  P   +  G L  + T +   V+VIFLLSG SL+L E+  AA DF+LN   Q  ++G  PLL     PL+  A     +  +L  GL+I +CLPTTVNMC++L+ +AGA+ A+A+ NA+L N LGV V PA +   +GA+T ++     ++KL  KV
Sbjct: 1909 CRSGSPSSDTKTT-WLRSLRSKLNANFFLV-GMLVAVILARLAPSLAKSHGLLHVD-TFSDYAVAVIFLLSGFSLKLSEMQKAALDFRLNLLTQTLSMGLIPLLAY---PLVQLAHRGAWLHGQLLDGLMITACLPTTVNMCVLLAKSAGANTAVALTNAILGNLLGVCVTPALLLITLGART-SIQLGPAVQKLGIKV 2100          
BLAST of EWM21704.1 vs. NCBI_GenBank
Match: gi|397638038|gb|EJK72906.1| (hypothetical protein THAOC_05515 [Thalassiosira oceanica])

HSP 1 Score: 119.783 bits (299), Expect = 3.202e-27
Identity = 71/177 (40.11%), Postives = 97/177 (54.80%), Query Frame = 0
Query:  114 KHFLVTGMVIAIVLARYNPHFGRIGGPLAPEWTVNTVGVSVIFLLSGLSLQLQELTSAAKDFKLNAAIQAFNLGAGPLLGLA-------FQPLLIFAGVDARLATGLLIVSCLPTTVNMCIVLSGAAGASLALAVFNAVLSNFLGVFVAPATIFACVGAQTINVPYVAVIKKLVYKV 283
            K+F + GM  A+ +AR  P  G+ G  L PE      GVS IF LSGLSL   EL +A ++ KLNA IQ       P +G         F P L+       L  GL+I+SCLPTT+NMCI+L+  +G S+  A+ N VLSN  G+ + PA +    G   I +P++ ++ KL  KV
Sbjct:  121 KNFFLLGMATAVSMARLAPSLGKNGSILRPEIFFGQYGVSAIFALSGLSLAFGELQNAFENIKLNAIIQFVTFAVWPAIGFTTTRIIETFMPQLL----PKSLLEGLVILSCLPTTINMCILLTSTSGGSVPTALCNVVLSNMSGILLTPALLMKLFGTSAIELPFLDLVVKLCKKV 293          
BLAST of EWM21704.1 vs. NCBI_GenBank
Match: gi|255072861|ref|XP_002500105.1| (bile Acid:Na+ symporter family [Micromonas commoda] >gi|226515367|gb|ACO61363.1| bile Acid:Na+ symporter family [Micromonas commoda])

HSP 1 Score: 119.013 bits (297), Expect = 5.415e-27
Identity = 76/172 (44.19%), Postives = 106/172 (61.63%), Query Frame = 0
Query:  111 IIRKHFLVTGMVIAIVLARYNPHFGRIGGPLAPEWTVNTVGVSVIFLLSGLSLQLQELTSAAKDFKLNAAIQAFNLGAGPLLGLAF--QPLLIFAGV-DARLATGLLIVSCLPTTVNMCIVLSGAAGASLALAVFNAVLSNFLGVFVAPATIFACVGAQTINV--PYVAVIK 277
            ++  +FLV GM+  + LA   P  G  GGP+ PE+TVN V + V+FL+SGL+L L EL  A  + + NA IQAF  G  P    A+   P L  AGV   RL  GL++++CLPTT+   + L+ AA  ++A+++F+AV SN  G+FV PA IF  +GA   +V  PY AV K
Sbjct:  109 LVANYFLV-GMLSGVALAYLAPGVGATGGPVRPEFTVNQVMIRVMFLISGLNLPLTELKKAVTNVRANALIQAFIFGF-PAAATAYVLGPALKAAGVLTPRLVDGLVVLACLPTTIGSGVALTNAAEGNVAVSLFHAVFSNLAGIFVTPALIFMYLGADCASVGSPYAAVTK 278          
BLAST of EWM21704.1 vs. NCBI_GenBank
Match: gi|957832884|ref|XP_014666475.1| (PREDICTED: sodium/bile acid cotransporter 7-B-like isoform X1 [Priapulus caudatus])

HSP 1 Score: 116.316 bits (290), Expect = 1.262e-26
Identity = 70/172 (40.70%), Postives = 98/172 (56.98%), Query Frame = 0
Query:  112 IRKHFLVTGMVIAIVLARYNPHFGRIGGPLAPEWTVNTVGVSVIFLLSGLSLQLQELTSAAKDFKLNAAIQAFNLGAGPLLGLAFQPLLIFAGVDARLATGLLIVSCLPTTVNMCIVLSGAAGASLALAVFNAVLSNFLGVFVAPATIFACVGAQTINVPYVAVIKKLVYKV 283
            +R ++ + G++I IV A++NP  G+ GG L PE TV  V VSVIF  SGLSL+ +EL  A  + KL+  +Q F L   P    A    L  + ++  L  GLL+V C+P  V+  ++L+ A G S A A+FN+   +FLG+FV P  I   VG  T  VP VA+   L   V
Sbjct:    7 LRANWFLLGIIIVIVSAKFNPEIGKKGGILKPEVTVKYVAVSVIFFNSGLSLKTEELMKALFNGKLHIFVQCFTLMFIPCFMQAIVAALQLSSINNWLLKGLLVVGCMPPPVSSAVILTKAVGGSEASAIFNSAFGSFLGIFVTPLLILHVVGVST-EVPVVAIFSTLAMTV 177          
BLAST of EWM21704.1 vs. NCBI_GenBank
Match: gi|260812405|ref|XP_002600911.1| (hypothetical protein BRAFLDRAFT_214910 [Branchiostoma floridae] >gi|229286201|gb|EEN56923.1| hypothetical protein BRAFLDRAFT_214910 [Branchiostoma floridae])

HSP 1 Score: 114.775 bits (286), Expect = 5.207e-26
Identity = 66/172 (38.37%), Postives = 99/172 (57.56%), Query Frame = 0
Query:  112 IRKHFLVTGMVIAIVLARYNPHFGRIGGPLAPEWTVNTVGVSVIFLLSGLSLQLQELTSAAKDFKLNAAIQAFNLGAGPLLGLAFQPLLIFAGVDARLATGLLIVSCLPTTVNMCIVLSGAAGASLALAVFNAVLSNFLGVFVAPATIFACVGAQTINVPYVAVIKKLVYKV 283
            I+K + + G+V  I +A+  P FG  GGPL PE+TV    VS IF  SGLSL+ ++LTSA    KL+  IQ F L   P L       L ++ ++  L  GL++V C+P  V+  ++L+ A G + A A+FN+ L +FLG+FV P  +   +G+ +  VPY  +  +L   V
Sbjct:    7 IKKEWFLLGIVFVISMAKVEPSFGIKGGPLKPEYTVKYFAVSFIFFNSGLSLKTEDLTSALFQVKLHGFIQTFTLVFIPCLIRVLIKGLQYSPINPWLLKGLMVVGCMPPPVSSAVILTKAVGGNEAAAIFNSALGSFLGIFVTPVLLLLFLGSPS-AVPYSTIFGQLTMTV 177          
BLAST of EWM21704.1 vs. NCBI_GenBank
Match: gi|156398825|ref|XP_001638388.1| (predicted protein [Nematostella vectensis] >gi|156225508|gb|EDO46325.1| predicted protein [Nematostella vectensis])

HSP 1 Score: 114.39 bits (285), Expect = 6.448e-26
Identity = 63/168 (37.50%), Postives = 99/168 (58.93%), Query Frame = 0
Query:  112 IRKHFLVTGMVIAIVLARYNPHFGRIGGPLAPEWTVNTVGVSVIFLLSGLSLQLQELTSAAKDFKLNAAIQAFNLGAGPLLGLAFQPLLIFAGVDARLATGLLIVSCLPTTVNMCIVLSGAAGASLALAVFNAVLSNFLGVFVAPATIFACVGAQTINVPYVAVIKKL 279
            I+K++ + G+V+ I LA+  P  G  GG L PE+TV  + VSVIF  SG+SL+ ++L SA    KL+  +Q+F +   P+L  A    L    ++A L  GLL+VSC+P  V+  ++L+ A G + A A+FN+   +FLG+FV P  +   +G  + +VP   +   L
Sbjct:    5 IKKNWFLIGIVVVISLAKIAPFIGEKGGILKPEYTVKYIAVSVIFFNSGISLRTEDLKSALTHVKLHVFVQSFTMAFVPMLMTAIVQFLSHTSLNAWLLKGLLVVSCMPPPVSSAVILTKAVGGNEAAAIFNSAFGSFLGIFVTPLLLLNLIGTSS-SVPVTKIFATL 171          
BLAST of EWM21704.1 vs. NCBI_GenBank
Match: gi|1072236187|gb|OEU20915.1| (hypothetical protein FRACYDRAFT_180844 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 115.161 bits (287), Expect = 1.109e-25
Identity = 75/188 (39.89%), Postives = 113/188 (60.11%), Query Frame = 0
Query:  103 ALRRLTSSIIR---KHFLVTGMVIAIVLARYNPHFGRIGGPLAPEWTVNTVGVSVIFLLSGLSLQLQELTSAAKDFKLNAAIQAFNLGAGPL-LGLAFQPLL---IFAGVDARLATGLLIVSCLPTTVNMCIVLSGAAGASLALAVFNAVLSNFLGVFVAPATIFACVGAQTINVPYVAVIKKLVYKV 283
            +L +  S +++   K++ + GM  A++LA+  P  G  GG L PE  +   GV++IFLLSGLSLQ ++LT A  + KLN  +Q    G  P  +GL  + +L   I   +   LA GLLI++ LPTTVNMCI+L+  AG + A A+ NAV+SN  G+ + P  +    GA +I++P+  ++ KL  KV
Sbjct:   82 SLSQRVSKVVKYADKNYFLIGMFAAVILAKIVPSLGINGGILRPELFIGNYGVALIFLLSGLSLQTKDLTQAISNVKLNGLVQLLIFGFWPFCIGLPLRYVLTRIIPNLIPPALADGLLIMTTLPTTVNMCIMLTSTAGGNTASAICNAVISNLGGIVLTPLLLLKFFGA-SIHLPFGKMVLKLCQKV 268          
BLAST of EWM21704.1 vs. NCBI_GenBank
Match: gi|196004961|ref|XP_002112347.1| (hypothetical protein TRIADDRAFT_25902 [Trichoplax adhaerens] >gi|190584388|gb|EDV24457.1| hypothetical protein TRIADDRAFT_25902 [Trichoplax adhaerens])

HSP 1 Score: 112.079 bits (279), Expect = 4.470e-25
Identity = 62/171 (36.26%), Postives = 103/171 (60.23%), Query Frame = 0
Query:  109 SSIIRKHFLVTGMVIAIVLARYNPHFGRIGGPLAPEWTVNTVGVSVIFLLSGLSLQLQELTSAAKDFKLNAAIQAFNLGAGPLLGLAFQPLLIFAGVDARLATGLLIVSCLPTTVNMCIVLSGAAGASLALAVFNAVLSNFLGVFVAPATIFACVGAQTINVPYVAVIKKL 279
            +S +RK + + G+V++I+LA+  P  G+ GG L PE T+    VS+IF  SG+SL+ +EL  +  +++L+A IQ F     P+       +L    +D  L  GL++VSC+P  V+  ++L+ A+G + A A+FN+   +FLGV V P  + A +G+    VP+++V  KL
Sbjct:    6 ASKLRKEWFLLGIVLSILLAKLQPTIGKTGGLLKPEITIKYFAVSIIFFNSGISLRSEELLKSFTNYRLHALIQGFTFIVVPIFVNILVAMLKHLAIDEWLLKGLIVVSCMPPPVSSAVILTKASGGNEAGAIFNSAFGSFLGVIVTPLLLLATLGSAA-TVPFLSVFTKL 175          
The following BLAST results are available for this feature:
BLAST of EWM21704.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102011|gb|EWM21704.1|0.000e+0100.00sodium bile acid cotransporter 7, partial [Nannoch... [more]
gi|223993025|ref|XP_002286196.1|3.444e-3137.61predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1129173809|gb|OLP83069.1|1.342e-2741.21Sodium/bile acid cotransporter 7 [Symbiodinium mic... [more]
gi|397638038|gb|EJK72906.1|3.202e-2740.11hypothetical protein THAOC_05515 [Thalassiosira oc... [more]
gi|255072861|ref|XP_002500105.1|5.415e-2744.19bile Acid:Na+ symporter family [Micromonas commoda... [more]
gi|957832884|ref|XP_014666475.1|1.262e-2640.70PREDICTED: sodium/bile acid cotransporter 7-B-like... [more]
gi|260812405|ref|XP_002600911.1|5.207e-2638.37hypothetical protein BRAFLDRAFT_214910 [Branchiost... [more]
gi|156398825|ref|XP_001638388.1|6.448e-2637.50predicted protein [Nematostella vectensis] >gi|156... [more]
gi|1072236187|gb|OEU20915.1|1.109e-2539.89hypothetical protein FRACYDRAFT_180844 [Fragilario... [more]
gi|196004961|ref|XP_002112347.1|4.470e-2536.26hypothetical protein TRIADDRAFT_25902 [Trichoplax ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8999rna8999Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications