EWM21716.1, cds8961 (CDS) Nannochloropsis gaditana

Overview
NameEWM21716.1
Unique Namecds8961
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:29798..29876 +
Alignment locationKK037251.1:30234..30359 +
Alignment locationKK037251.1:30555..30653 +
Alignment locationKK037251.1:30817..30897 +
Alignment locationKK037251.1:31208..31622 +
Alignment locationKK037251.1:31688..31782 +
Alignment locationKK037251.1:31841..31958 +
Alignment locationKK037251.1:32185..32230 +
Alignment locationKK037251.1:32324..32420 +
Alignment locationKK037251.1:32691..33172 +
Alignment locationKK037251.1:33301..33462 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21716.1
Productchalcone isomerase-like protein
Orig transcript idgnl|cribi|Naga_100183g9.8963.mrna
GeneCHI
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:29798..29876 +
KK037251.1supercontigKK037251.1:30234..30359 +
KK037251.1supercontigKK037251.1:30555..30653 +
KK037251.1supercontigKK037251.1:30817..30897 +
KK037251.1supercontigKK037251.1:31208..31622 +
KK037251.1supercontigKK037251.1:31688..31782 +
KK037251.1supercontigKK037251.1:31841..31958 +
KK037251.1supercontigKK037251.1:32185..32230 +
KK037251.1supercontigKK037251.1:32324..32420 +
KK037251.1supercontigKK037251.1:32691..33172 +
KK037251.1supercontigKK037251.1:33301..33462 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016872intramolecular lyase activity
Vocabulary: INTERPRO
TermDefinition
IPR016087Chalcone_isomerase
Homology
BLAST of EWM21716.1 vs. NCBI_GenBank
Match: gi|585102033|gb|EWM21716.1| (chalcone isomerase-like protein [Nannochloropsis gaditana])

HSP 1 Score: 1239.94 bits (3207), Expect = 0.000e+0
Identity = 599/599 (100.00%), Postives = 599/599 (100.00%), Query Frame = 0
Query:    1 MANPEVWTRSGSGGGLRGHSDASPDWAPGARVPFQERIRIPRAWQPGEAKPENDSDNEEDRPAAGTSKGKSGDRRGGYKCGRCGQPKKGHVCTNKPRLRAAFVETTEVEIQAERDAEMVLRRLDTKLQGYPESYGLTFRWAPSAASLYAAQQQQQEEQQQHCDQRQPQMASQQLQQQQQQPLYERAHLLATPSTNFSQQQQTEHLLPMQAGGACAMECLSSSDHSHQVQQVQDHGPVQLQQSLEPPHSHRGRGRAPPARVTGGSDSGVLSATGERWGRRRAESDRAAPASVLLTKGNIFKCEKTLFKTENLAEYDFEENLLRTHEADTCLELFVLCGVGKDTQVVRTPGSKPEQVYITIGKRNIMARSCIFRLALFCAILLCLSDGYGKTSNDTCEVKGKEVVDKVTGLVFPMHRILPHGGRGRELTLLGVGPRRKNLFVVEVNVYAVGLYLETSLLGRLKAFRGKSSEALAKEAKYYATLMKEGSGLNRALYLIFARTVPAGKIVEALAAVDGVKKEVMADFKKSLLAAIGSSLKEKETLTLAWTPDDRLSLFVRDKPVKTFPSLELARGIFNLYLGEKPISPEAKKGFAAVAPQHIN 599
            MANPEVWTRSGSGGGLRGHSDASPDWAPGARVPFQERIRIPRAWQPGEAKPENDSDNEEDRPAAGTSKGKSGDRRGGYKCGRCGQPKKGHVCTNKPRLRAAFVETTEVEIQAERDAEMVLRRLDTKLQGYPESYGLTFRWAPSAASLYAAQQQQQEEQQQHCDQRQPQMASQQLQQQQQQPLYERAHLLATPSTNFSQQQQTEHLLPMQAGGACAMECLSSSDHSHQVQQVQDHGPVQLQQSLEPPHSHRGRGRAPPARVTGGSDSGVLSATGERWGRRRAESDRAAPASVLLTKGNIFKCEKTLFKTENLAEYDFEENLLRTHEADTCLELFVLCGVGKDTQVVRTPGSKPEQVYITIGKRNIMARSCIFRLALFCAILLCLSDGYGKTSNDTCEVKGKEVVDKVTGLVFPMHRILPHGGRGRELTLLGVGPRRKNLFVVEVNVYAVGLYLETSLLGRLKAFRGKSSEALAKEAKYYATLMKEGSGLNRALYLIFARTVPAGKIVEALAAVDGVKKEVMADFKKSLLAAIGSSLKEKETLTLAWTPDDRLSLFVRDKPVKTFPSLELARGIFNLYLGEKPISPEAKKGFAAVAPQHIN
Sbjct:    1 MANPEVWTRSGSGGGLRGHSDASPDWAPGARVPFQERIRIPRAWQPGEAKPENDSDNEEDRPAAGTSKGKSGDRRGGYKCGRCGQPKKGHVCTNKPRLRAAFVETTEVEIQAERDAEMVLRRLDTKLQGYPESYGLTFRWAPSAASLYAAQQQQQEEQQQHCDQRQPQMASQQLQQQQQQPLYERAHLLATPSTNFSQQQQTEHLLPMQAGGACAMECLSSSDHSHQVQQVQDHGPVQLQQSLEPPHSHRGRGRAPPARVTGGSDSGVLSATGERWGRRRAESDRAAPASVLLTKGNIFKCEKTLFKTENLAEYDFEENLLRTHEADTCLELFVLCGVGKDTQVVRTPGSKPEQVYITIGKRNIMARSCIFRLALFCAILLCLSDGYGKTSNDTCEVKGKEVVDKVTGLVFPMHRILPHGGRGRELTLLGVGPRRKNLFVVEVNVYAVGLYLETSLLGRLKAFRGKSSEALAKEAKYYATLMKEGSGLNRALYLIFARTVPAGKIVEALAAVDGVKKEVMADFKKSLLAAIGSSLKEKETLTLAWTPDDRLSLFVRDKPVKTFPSLELARGIFNLYLGEKPISPEAKKGFAAVAPQHIN 599          
BLAST of EWM21716.1 vs. NCBI_GenBank
Match: gi|553184212|ref|XP_005854050.1| (hypothetical protein NGA_0110802 [Nannochloropsis gaditana CCMP526] >gi|553190573|ref|XP_005855218.1| hypothetical protein NGA_0110801 [Nannochloropsis gaditana CCMP526] >gi|422293840|gb|EKU21140.1| hypothetical protein NGA_0110801 [Nannochloropsis gaditana CCMP526] >gi|422295010|gb|EKU22309.1| hypothetical protein NGA_0110802 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 543.117 bits (1398), Expect = 0.000e+0
Identity = 262/267 (98.13%), Postives = 263/267 (98.50%), Query Frame = 0
Query:    1 MANPEVWTRSGSGGGLRGHSDASPDWAPGARVPFQERIRIPRAWQPGEAKPENDSDNEEDRPAAGTSKGKSGDRRGGYKCGRCGQPKKGHVCTNKPRLRAAFVETTEVEIQAERDAEMVLRRLDTKLQGYPESYGLTFRWAPSAASLYAAQQQQQEEQQQHCDQRQPQMASQQLQQQQQQPLYERAHLLATPSTNFSQQQQTEHLLPMQAGGACAMECLSSSDHSHQVQQVQDHGPVQLQQSLEPPHSHRGRGRAPPARVTGGSDSG 267
            MANPEVWTRSGSGGGLRGHSDASPDWAPGA VPFQERIRIPRAWQPGEAKPENDSDNEEDRPAAGTSKGKSGDRRGGYKCGRCGQPKKGHVCTNKPRLRAAFVETTEVEIQAERDAEMVLRRLDTKLQGYPESYGLTFRWAPSAASLYAAQQQQQEEQQQH DQRQPQMASQQLQQQQQQPLYERAHLLATPSTNFSQQQQTEHLLPMQAGGACAMECLSSSDHSHQVQQVQDHGPVQ QQSLEPPHSHRGRGRAPPA VTGGS+SG
Sbjct:    1 MANPEVWTRSGSGGGLRGHSDASPDWAPGAPVPFQERIRIPRAWQPGEAKPENDSDNEEDRPAAGTSKGKSGDRRGGYKCGRCGQPKKGHVCTNKPRLRAAFVETTEVEIQAERDAEMVLRRLDTKLQGYPESYGLTFRWAPSAASLYAAQQQQQEEQQQHSDQRQPQMASQQLQQQQQQPLYERAHLLATPSTNFSQQQQTEHLLPMQAGGACAMECLSSSDHSHQVQQVQDHGPVQPQQSLEPPHSHRGRGRAPPAGVTGGSNSG 267          
BLAST of EWM21716.1 vs. NCBI_GenBank
Match: gi|553184206|ref|XP_005854048.1| (chalcone isomerase-like protein [Nannochloropsis gaditana CCMP526] >gi|553190564|ref|XP_005855216.1| chalcone isomerase-like protein [Nannochloropsis gaditana CCMP526] >gi|422293838|gb|EKU21138.1| chalcone isomerase-like protein [Nannochloropsis gaditana CCMP526] >gi|422295008|gb|EKU22307.1| chalcone isomerase-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 478.019 bits (1229), Expect = 9.659e-165
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0
Query:  365 MARSCIFRLALFCAILLCLSDGYGKTSNDTCEVKGKEVVDKVTGLVFPMHRILPHGGRGRELTLLGVGPRRKNLFVVEVNVYAVGLYLETSLLGRLKAFRGKSSEALAKEAKYYATLMKEGSGLNRALYLIFARTVPAGKIVEALAAVDGVKKEVMADFKKSLLAAIGSSLKEKETLTLAWTPDDRLSLFVRDKPVKTFPSLELARGIFNLYLGEKPISPEAKKGFAAVAPQHIN 599
            MARSCIFRLALFCAILLCLSDGYGKTSNDTCEVKGKEVVDKVTGLVFPMHRILPHGGRGRELTLLGVGPRRKNLFVVEVNVYAVGLYLETSLLGRLKAFRGKSSEALAKEAKYYATLMKEGSGLNRALYLIFARTVPAGKIVEALAAVDGVKKEVMADFKKSLLAAIGSSLKEKETLTLAWTPDDRLSLFVRDKPVKTFPSLELARGIFNLYLGEKPISPEAKKGFAAVAPQHIN
Sbjct:    1 MARSCIFRLALFCAILLCLSDGYGKTSNDTCEVKGKEVVDKVTGLVFPMHRILPHGGRGRELTLLGVGPRRKNLFVVEVNVYAVGLYLETSLLGRLKAFRGKSSEALAKEAKYYATLMKEGSGLNRALYLIFARTVPAGKIVEALAAVDGVKKEVMADFKKSLLAAIGSSLKEKETLTLAWTPDDRLSLFVRDKPVKTFPSLELARGIFNLYLGEKPISPEAKKGFAAVAPQHIN 235          
BLAST of EWM21716.1 vs. NCBI_GenBank
Match: gi|873220908|emb|CEM34595.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 148.673 bits (374), Expect = 8.541e-38
Identity = 81/188 (43.09%), Postives = 120/188 (63.83%), Query Frame = 0
Query:  404 DKVTGLVFPMHRILPHGGRGRELTLLGVGPRRKNLFVVEVNVYAVGLYLETSLLGR-LKAFRGKSSEALAKEAKYYATLMKEGSGLNRALYLIFARTVPAGKIVEALAAVDGVKKEVMADFKKSLLAAIGSSLKEKETLTLAWTPDDRLSLFVRDKPVKTFPSLELARGIFNLYLGEKPISPEAKKGF 590
            DKVTG+ FP     P   +   +TLLG GPRRKNL + +VNVY+VGLY+E     + L +F+G+S E+L  + ++Y TL+  G  + + + L FARTV A K+ +AL+AV GV+ EV+++F   L   +G+S+K+ ET+ + WT D RL + +R +P  T    +L +  F LYLG+ P+S EAK  F
Sbjct:   11 DKVTGIEFPCEATFPGTPK---MTLLGAGPRRKNLGIAKVNVYSVGLYVEPKEAAKALSSFKGESEESLMNDDRFYDTLL--GKEVPKLVLLKFARTVGAHKVADALSAVKGVEPEVVSEFCSLLEKGMGASIKKAETIAMGWTEDQRLDVLIRGQPAGTVVDAKLPKAFFELYLGKTPVSMEAKHAF 193          
BLAST of EWM21716.1 vs. NCBI_GenBank
Match: gi|298712887|emb|CBJ33403.1| (Similar to Chalcone Isomerase [Ectocarpus siliculosus])

HSP 1 Score: 135.191 bits (339), Expect = 1.173e-32
Identity = 81/219 (36.99%), Postives = 118/219 (53.88%), Query Frame = 0
Query:  381 LCLSDGYGKTSNDTCEVKGKEVVDKVTGLVFPMHRILPHGGRGRELTLLGVGPRRKNLFVVEVNVYAVGLYLETSLLGR-LKAFRGKSSEALAKEAKYYATLMKEGSGLNRALYLIFARTVPAGKIVEALAAVDGVKKEVMADFKKSLLAAIGSSLKEKETLTLAWTPDDRLSLFVRDKPVKTFPSLELARGIFNLYLGEKPISPEAKKGFAAVAPQHI 598
            +CL+  Y K +         +V D  TGLV P  +       G  L  LGVG R K++  V VNVY VGLY+E     + LK++ G+  E L+K+   Y  L   G   ++ L+L+FAR+V A K+V+A  AV GV ++V+  F    +  +G S+  +E++TL W   DRL + VRDK + +     L   +FNL+LG  P+SP AK  FA   P  +
Sbjct:   12 VCLTTSYAKAAGLAKTPLSPDVRDPATGLVLPRTKQFASSKTG--LVCLGVGVRVKSVAFVNVNVYTVGLYVEPKGARKALKSYAGRDPEELSKDKSVYRVLGGAGD-FSKYLHLVFARSVGAQKVVDAFTAVKGVNQDVLDKFSSLTMEGVGKSINREESVTLGWEGKDRLVVLVRDKEIGSVIDESLPASVFNLFLGSDPVSPVAKTAFAEGVPAFL 227          
BLAST of EWM21716.1 vs. NCBI_GenBank
Match: gi|1026773431|gb|OAE32652.1| (hypothetical protein AXG93_632s1010 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 81.2629 bits (199), Expect = 3.862e-13
Identity = 60/208 (28.85%), Postives = 99/208 (47.60%), Query Frame = 0
Query:  401 EVVDKVTGLVFPMHRILPHGGRGRELTLLGVGPRRKNLFVVEVNVYAVGLYLETSLLGRLKAFRGKSSEALAKEAKYYATLMKEGSGLNRALYLIFARTVPA----GKIVEALAAVDGVKKEVMADFKKSLLAAIGS-----SLKEKETLTLAWTPDDRLSLFVR------DKPVKTFPSLELARGIFNLYLGEKPISPEAKKGFAAV 593
            EVV+ VT + FP   I P  G   +L L G G R K +  ++V VYAVG Y++   +  L A++ K +  L K+  +   L+     + ++L ++ AR +      G + EALA    +K        +  L + G       LKEK  ++L WT    L + +         P  +  SL+L   ++++YLG+ P+SP AK    ++
Sbjct:   89 EVVEPVTNIKFPKSTIAP--GASTDLVLAGAGVREKKIAFLKVKVYAVGFYVDPKGISSLDAWKSKGTSELEKDESFSKVLI--DIPVEKSLRIVLARDIEGAQFWGALDEALAP--RLKAAGAGAAGEQALNSFGDVFKNRPLKEKTVISLTWTQPSTLHISITPEGRSPSAPDASIDSLDLVSSLYDVYLGKDPVSPSAKASVVSL 290          
BLAST of EWM21716.1 vs. NCBI_GenBank
Match: gi|1052467702|gb|AOC83893.1| (chalcone isomerase 3a, partial [Plagiochasma appendiculatum])

HSP 1 Score: 78.5666 bits (192), Expect = 2.087e-12
Identity = 64/206 (31.07%), Postives = 104/206 (50.49%), Query Frame = 0
Query:  401 EVVDKVTGLVFPMHRILPHGGRGRELTLLGVGPRRKNLFVVEVNVYAVGLYLETSLLGRLKAFRGKSSEALAKEAKYYATLMKEGSGLNRALYLIFARTVPA----GKIVEALA---------AVDGVKKEVMADFKKSLLAAIGSSLKEKETLTLAWTPDDRLSLFVRDK---PVKTFPSLE---LARGIFNLYLGEKPISPEAK 587
            EV++ VTG+ F  + I P  G  +EL L G G R K +  ++V VYAVGLY+E S+   L+A++ K++  L K+  +   L+  G+ + ++L ++ AR +      G + EALA         A          D  K      G  LKE+  + L WT    L + + ++   P  +  S+E   L   +F++YLG++P+SP  K
Sbjct:   88 EVLEPVTGIKFLRNTIAP--GASKELVLAGAGVREKKIAFLKVKVYAVGLYVEPSVASSLEAWKAKTASELEKDEGFCKALI--GAPIEKSLRIVLARDIEGAQFWGALDEALAPRLRAAGAGAAGEKALAAFGDVFK------GRPLKERTVIFLTWTQPSTLDISISEEGASPSASDASIESEALLFCLFDVYLGKEPVSPTTK 283          
BLAST of EWM21716.1 vs. NCBI_GenBank
Match: gi|1026765833|gb|OAE26463.1| (hypothetical protein AXG93_815s1250 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 75.8702 bits (185), Expect = 2.200e-11
Identity = 62/213 (29.11%), Postives = 100/213 (46.95%), Query Frame = 0
Query:  400 KEVVDKVTGLVFPMHRILPHGGRGRELTLLGVGPRRKNLFV-VEVNVYAVGLYLETSLLGRLKAFRGKSSEALAKEAKYYATLMKEGSGLNRALYLIFARTVPAGKIVEALAAVDGVKKEVMADFKKSLLAAIGSS--------------LKEKETLTLAWTPDDRLSLFVR------DKPVKTFPSLELARGIFNLYLGEKPISPEAKKGFA 591
            KEVV+ VTG+ F      P  G  +EL L G G R K +F  V+V VYAVGLY++ S +  L+A++ K ++ + K+  +  TL+     + +++ ++ AR V   +   AL        + +A   K+L A                   LK+K  + L WT    L + +         P  +  S  L   ++++YLG+ P+SP AK   A
Sbjct:   93 KEVVEPVTGIKFAKSTNAP--GASKELVLAGAGVRIKKVFAAVKVKVYAVGLYVDPSAVSSLQAWKSKGTKEIEKDESFSKTLIDL--PVEKSIRIVLARDVEGAQFWGALG-------DALAPRLKALGAGAAGEQALNTFGDVFKNRPLKDKTVVFLTWTQPSTLHVSIAPEGGSPSAPDASIESAALLSSLYDVYLGKDPVSPSAKASIA 294          
BLAST of EWM21716.1 vs. NCBI_GenBank
Match: gi|1210516854|dbj|GAX24343.1| (hypothetical protein FisN_4Lh464 [Fistulifera solaris])

HSP 1 Score: 76.6406 bits (187), Expect = 2.831e-11
Identity = 44/91 (48.35%), Postives = 57/91 (62.64%), Query Frame = 0
Query:   50 KPENDSDNEEDRPAAGTSKGKSG-DR-RGGYKCGRCGQPKKGHVCTNKPRLR----AAFVETTEVEIQAERDAEMVLRRLDTKLQGYPESY 134
            +P   S  EED   A +S G+SG D+ RG YKCGRCG PKKGHVC  + +++        ET    +Q ERD  M LRRL+ ++QG+PESY
Sbjct:  215 QPSQPSFYEED--GAESSAGESGKDKGRGSYKCGRCGVPKKGHVCPYQAKVKRRPDEPPPETRNAAVQVERDEFMTLRRLNIRIQGFPESY 303          
BLAST of EWM21716.1 vs. NCBI_GenBank
Match: gi|1052467704|gb|AOC83894.1| (chalcone isomerase 3a, partial [Conocephalum conicum])

HSP 1 Score: 74.7146 bits (182), Expect = 3.981e-11
Identity = 62/205 (30.24%), Postives = 100/205 (48.78%), Query Frame = 0
Query:  400 KEVVDKVTGLVFPMHRILPHGGRGRELTLLGVGPRRKNLFVVEVNVYAVGLYLETSLLGRLKAFRGKSSEALAKEAKYYATLMKEGSGLNRALYLIFARTVPA----GKIVEAL-----AAVDGVKKEVMADFKKSLLAAIGSSLK-----EKETLTLAWTPDDRLSLFVR------DKPVKTFPSLELARGIFNLYLGEKPISP 584
             EV++ VTG+ F    I P  G  +EL L+G G R K +  ++V VYAVGLY+E S+   L+A++ K++  L K+  ++  ++   S + ++L ++ AR +      G + EAL     AA  GV  E         L A G   K     ++  + L WT    L + V         P  +  S  L   ++++YLG+ P+SP
Sbjct:   88 NEVLEPVTGIKFLKTTIAP--GASKELVLVGAGVRDKKIAFLKVKVYAVGLYVEPSVASSLEAWKAKAASELEKDESFFKAIID--SPVEKSLRIVLARDIEGAQFWGALDEALAPRLKAAGAGVAGE-------KALVAFGDVFKNRPLTDRTVIFLTWTQPSTLHISVSTDGASPSPPDASIESGALLSCLYDVYLGKDPVSP 281          
The following BLAST results are available for this feature:
BLAST of EWM21716.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102033|gb|EWM21716.1|0.000e+0100.00chalcone isomerase-like protein [Nannochloropsis g... [more]
gi|553184212|ref|XP_005854050.1|0.000e+098.13hypothetical protein NGA_0110802 [Nannochloropsis ... [more]
gi|553184206|ref|XP_005854048.1|9.659e-165100.00chalcone isomerase-like protein [Nannochloropsis g... [more]
gi|873220908|emb|CEM34595.1|8.541e-3843.09unnamed protein product [Vitrella brassicaformis C... [more]
gi|298712887|emb|CBJ33403.1|1.173e-3236.99Similar to Chalcone Isomerase [Ectocarpus siliculo... [more]
gi|1026773431|gb|OAE32652.1|3.862e-1328.85hypothetical protein AXG93_632s1010 [Marchantia po... [more]
gi|1052467702|gb|AOC83893.1|2.087e-1231.07chalcone isomerase 3a, partial [Plagiochasma appen... [more]
gi|1026765833|gb|OAE26463.1|2.200e-1129.11hypothetical protein AXG93_815s1250 [Marchantia po... [more]
gi|1210516854|dbj|GAX24343.1|2.831e-1148.35hypothetical protein FisN_4Lh464 [Fistulifera sola... [more]
gi|1052467704|gb|AOC83894.1|3.981e-1130.24chalcone isomerase 3a, partial [Conocephalum conic... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8991rna8991Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications