EWM21734.1, cds8934 (CDS) Nannochloropsis gaditana

Overview
NameEWM21734.1
Unique Namecds8934
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:589888..589940 +
Alignment locationKK037250.1:590817..590938 +
Alignment locationKK037250.1:590983..591062 +
Alignment locationKK037250.1:591151..592063 +
Alignment locationKK037250.1:592208..592521 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21734.1
Producthistone deacetylase 1
Orig transcript idgnl|cribi|Naga_100270g5.5529.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:589888..589940 +
KK037250.1supercontigKK037250.1:590817..590938 +
KK037250.1supercontigKK037250.1:590983..591062 +
KK037250.1supercontigKK037250.1:591151..592063 +
KK037250.1supercontigKK037250.1:592208..592521 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005488binding
GO:0004407histone deacetylase activity
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006464cellular protein modification process
GO:0016043cellular component organization
GO:0016575histone deacetylation
Vocabulary: INTERPRO
TermDefinition
IPR023801His_deacetylse_dom
IPR000286His_deacetylse
IPR003084His_deacetylse_1
Homology
BLAST of EWM21734.1 vs. NCBI_GenBank
Match: gi|585102063|gb|EWM21734.1| (histone deacetylase 1 [Nannochloropsis gaditana])

HSP 1 Score: 1032.32 bits (2668), Expect = 0.000e+0
Identity = 493/493 (100.00%), Postives = 493/493 (100.00%), Query Frame = 0
Query:    1 MIAYISHKACSRHTASCIPAKSPQVVSFSSLTLYKASAEAACEKTAHPIVTLTYPRLLTPTKRRISYFYDSDIGNFHYGQGHPMKPHRVRMTHSLVVYYWLYRNMEILRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAALLNQKEADIVINWSGGLHHAKKSEASGFCYVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFPGTGDVSDFGHGNGKNYAINFPLHDGMDDESFVSVFRPVIGKVMETFAPGAIVLQCGADSLSGDRLGCFNLSLKGHADAVAFVKSFDVPVLALGGGGYTLRNVPRCWVYETSVLQGTEIKDDLPFHDYFEYYGPDYKLHLPVSNMENLNTKPYLETIKQQLFTILSQVSPTGAQIQTGQPGTSMTPPDAALPETARERESEMEERDPDTRVGDGGGGRKEHPLEMMPGGDGTRR 493
            MIAYISHKACSRHTASCIPAKSPQVVSFSSLTLYKASAEAACEKTAHPIVTLTYPRLLTPTKRRISYFYDSDIGNFHYGQGHPMKPHRVRMTHSLVVYYWLYRNMEILRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAALLNQKEADIVINWSGGLHHAKKSEASGFCYVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFPGTGDVSDFGHGNGKNYAINFPLHDGMDDESFVSVFRPVIGKVMETFAPGAIVLQCGADSLSGDRLGCFNLSLKGHADAVAFVKSFDVPVLALGGGGYTLRNVPRCWVYETSVLQGTEIKDDLPFHDYFEYYGPDYKLHLPVSNMENLNTKPYLETIKQQLFTILSQVSPTGAQIQTGQPGTSMTPPDAALPETARERESEMEERDPDTRVGDGGGGRKEHPLEMMPGGDGTRR
Sbjct:    1 MIAYISHKACSRHTASCIPAKSPQVVSFSSLTLYKASAEAACEKTAHPIVTLTYPRLLTPTKRRISYFYDSDIGNFHYGQGHPMKPHRVRMTHSLVVYYWLYRNMEILRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAALLNQKEADIVINWSGGLHHAKKSEASGFCYVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFPGTGDVSDFGHGNGKNYAINFPLHDGMDDESFVSVFRPVIGKVMETFAPGAIVLQCGADSLSGDRLGCFNLSLKGHADAVAFVKSFDVPVLALGGGGYTLRNVPRCWVYETSVLQGTEIKDDLPFHDYFEYYGPDYKLHLPVSNMENLNTKPYLETIKQQLFTILSQVSPTGAQIQTGQPGTSMTPPDAALPETARERESEMEERDPDTRVGDGGGGRKEHPLEMMPGGDGTRR 493          
BLAST of EWM21734.1 vs. NCBI_GenBank
Match: gi|553190277|ref|XP_005855159.1| (histone deacetylase 1/2 [Nannochloropsis gaditana CCMP526] >gi|422293900|gb|EKU21200.1| histone deacetylase 1/2 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 907.516 bits (2344), Expect = 0.000e+0
Identity = 432/437 (98.86%), Postives = 434/437 (99.31%), Query Frame = 0
Query:   57 LLTPTKRRISYFYDSDIGNFHYGQGHPMKPHRVRMTHSLVVYYWLYRNMEILRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAALLNQKEADIVINWSGGLHHAKKSEASGFCYVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFPGTGDVSDFGHGNGKNYAINFPLHDGMDDESFVSVFRPVIGKVMETFAPGAIVLQCGADSLSGDRLGCFNLSLKGHADAVAFVKSFDVPVLALGGGGYTLRNVPRCWVYETSVLQGTEIKDDLPFHDYFEYYGPDYKLHLPVSNMENLNTKPYLETIKQQLFTILSQVSPTGAQIQTGQPGTSMTPPDAALPETARERESEMEERDPDTRVGDGGGGRKEHPLEMMPGGDGTRR 493
            +  PTKRRISYFYDSDIGNFHYGQGHPMKPHRVRMTHSLVVYYWLYRNMEILRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAALLNQKEADIVINWSGGLHHAKKSEASGFCYVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFPGTGDVSDFGHGNGKNYAINFPLHDGMDDESFVSVFRPVIGKVMETFAPGAIVLQCGADSLSGDRLGCFNLSLKGHADAVAFVKSFDVPVLALGGGGYTLRNVPRCWVYETSVLQGTEIKDDLPFHDYFEYYGPDYKLHLPVSNMENLNTKPYLETIKQQLFTILSQVSPTGAQIQTGQPGTSMTPPDAALPETARERESEMEERDPDTRVGDGGGGRKEHPLEMMP GDGT+R
Sbjct:    1 MAAPTKRRISYFYDSDIGNFHYGQGHPMKPHRVRMTHSLVVYYWLYRNMEILRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAALLNQKEADIVINWSGGLHHAKKSEASGFCYVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFPGTGDVSDFGHGNGKNYAINFPLHDGMDDESFVSVFRPVIGKVMETFAPGAIVLQCGADSLSGDRLGCFNLSLKGHADAVAFVKSFDVPVLALGGGGYTLRNVPRCWVYETSVLQGTEIKDDLPFHDYFEYYGPDYKLHLPVSNMENLNTKPYLETIKQQLFTILSQVSPTGAQIQTGQPGTSMTPPDAALPETARERESEMEERDPDTRVGDGGGGRKEHPLEMMPEGDGTQR 437          
BLAST of EWM21734.1 vs. NCBI_GenBank
Match: gi|219121958|ref|XP_002181323.1| (histone deacetylase 1 isoform [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407309|gb|EEC47246.1| histone deacetylase 1 isoform [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 672.159 bits (1733), Expect = 0.000e+0
Identity = 315/423 (74.47%), Postives = 357/423 (84.40%), Query Frame = 0
Query:   63 RRISYFYDSDIGNFHYGQGHPMKPHRVRMTHSLVVYYWLYRNMEILRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAALLNQKEADIVINWSGGLHHAKKSEASGFCYVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFPGTGDVSDFGHGNGKNYAINFPLHDGMDDESFVSVFRPVIGKVMETFAPGAIVLQCGADSLSGDRLGCFNLSLKGHADAVAFVKSFDVPVLALGGGGYTLRNVPRCWVYETSVLQGTEIKDDLPFHDYFEYYGPDYKLHLPVSNMENLNTKPYLETIKQQLFTILSQVSPT-GAQIQTGQPGTSMTPPDAALPETARERESEMEERDPDTRVGDGGGGRKEHPLEM 484
            RR+SYFYD++IGN+HYGQGHPMKPHRVRMTH+LVV Y LYR ME+ RP+ V  + MTRFHSDDYINFLRVITPDNMQ+Y+R LQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAA LN+   DIVINW+GGLHHAKK+EASGFCYVNDCVLAILELLK H RVLYIDIDIHHGDGVEEAFY+T+RVMTVSFHKFGEYFPGTGDV D G+  GKNYAINFPL+DGMDD+S+ S+FRPVIGK+ME FAPGA+VLQCGADSLSGDRLGCFNLS +GHA+ V FV+SF++P+L LGGGGYTLRNVPRCW YETSVL G ++ D+LPF+DYFEY+GPDY+LHLPVSNMENLN++ YL+  K QL  ILSQV P    QIQTGQ  +   P   A+     + E   EE +PD RV     GRKEH  E+
Sbjct:    5 RRVSYFYDAEIGNYHYGQGHPMKPHRVRMTHNLVVNYGLYRKMEVFRPRLVSPTAMTRFHSDDYINFLRVITPDNMQDYIRPLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAARLNENRVDIVINWAGGLHHAKKAEASGFCYVNDCVLAILELLKKHERVLYIDIDIHHGDGVEEAFYSTNRVMTVSFHKFGEYFPGTGDVLDVGYAQGKNYAINFPLNDGMDDDSYESIFRPVIGKIMEVFAPGAVVLQCGADSLSGDRLGCFNLSAQGHANCVEFVRSFNIPMLVLGGGGYTLRNVPRCWTYETSVLTGEKVSDELPFNDYFEYFGPDYRLHLPVSNMENLNSRAYLDKTKNQLLDILSQVEPVPSVQIQTGQIDSQTNPRSMAM---EVDDEPPAEESNPDARVTREDTGRKEHASEL 424          
BLAST of EWM21734.1 vs. NCBI_GenBank
Match: gi|1072230809|gb|OEU15542.1| (class I RPD3 type histone deacetylase protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 652.514 bits (1682), Expect = 0.000e+0
Identity = 305/411 (74.21%), Postives = 347/411 (84.43%), Query Frame = 0
Query:   58 LTPTKRRISYFYDSDIGNFHYGQGHPMKPHRVRMTHSLVVYYWLYRNMEILRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAALLNQKEADIVINWSGGLHHAKKSEASGFCYVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFPGTGDVSDFGHGNGKNYAINFPLHDGMDDESFVSVFRPVIGKVMETFAPGAIVLQCGADSLSGDRLGCFNLSLKGHADAVAFVKSFDVPVLALGGGGYTLRNVPRCWVYETSVLQGTEIKDDLPFHDYFEYYGPDYKLHLPVSNMENLNTKPYLETIKQQLFTILSQVSPT-GAQIQTGQPGTSMTPP------DAALPETARERESEM 461
            +T   RR+SYFYD+++GN+HYGQGHPMKPHRVRMTH+LVV Y LYR ME+ RP+ V  + MTRFHSDDYINFL+VITPDNM +Y+RQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAA LN    DIVINW+GGLHHAKK+EASGFCYVNDCVLAILELLK H RVLYIDIDIHHGDGVEEAFY+T+RVMT SFHKFGEYFPGTGDV D GH +GKNY+INFPL+DGMDD+S+ S+FRPVIGK+ME FAPGAIVLQCGADSLSGDRLGCFNLS+KGHAD V +V+SF +P+L LGGGGYTLRNVPRCW YET+VL G E+KD+LPF+DYFEY+GPDY+L+LPVSNMENLN+  YLE  K QL  ILS V P    QIQTGQ  + + P       D    +  +E  SE+
Sbjct:    1 MTAENRRVSYFYDAEVGNYHYGQGHPMKPHRVRMTHNLVVNYGLYRKMEVFRPRLVSPTAMTRFHSDDYINFLKVITPDNMGDYVRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAARLNDNAVDIVINWAGGLHHAKKAEASGFCYVNDCVLAILELLKKHERVLYIDIDIHHGDGVEEAFYSTNRVMTCSFHKFGEYFPGTGDVHDVGHADGKNYSINFPLNDGMDDKSYKSIFRPVIGKIMEMFAPGAIVLQCGADSLSGDRLGCFNLSVKGHADCVRYVRSFGIPMLVLGGGGYTLRNVPRCWTYETAVLTGEEVKDELPFNDYFEYFGPDYRLNLPVSNMENLNSPEYLEKTKNQLLEILSDVEPVPSVQIQTGQVESQLNPRGMNLEVDGPTEDERKEHSSEL 411          
BLAST of EWM21734.1 vs. NCBI_GenBank
Match: gi|224003547|ref|XP_002291445.1| (histone deacetylase 1p [Thalassiosira pseudonana CCMP1335] >gi|220973221|gb|EED91552.1| histone deacetylase 1p [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 647.121 bits (1668), Expect = 0.000e+0
Identity = 300/426 (70.42%), Postives = 354/426 (83.10%), Query Frame = 0
Query:   61 TKRRISYFYDSDIGNFHYGQGHPMKPHRVRMTHSLVVYYWLYRNMEILRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAALLNQKEADIVINWSGGLHHAKKSEASGFCYVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFPGTGDVSDFGHGNGKNYAINFPLHDGMDDESFVSVFRPVIGKVMETFAPGAIVLQCGADSLSGDRLGCFNLSLKGHADAVAFVKSFDVPVLALGGGGYTLRNVPRCWVYETSVLQGTEIKDDLPFHDYFEYYGPDYKLHLPVSNMENLNTKPYLETIKQQLFTILSQVSPT-GAQIQTGQPGTSMTPPDAALP-ETARERESEMEERDPDTRVGDGGGGRKEHPLEM 484
            T RR+SYFYD+++GN+HYGQGHPMKPHRVRMTH+LVV Y LY+ M++ RP+ +  + MTRFHSDDYINFL+VITPDNM ++ RQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAA LN+  AD+VINWSGGLHHAKK+EASGFCY+NDCVLAILELLK H RVLYIDIDIHHGDGVEEAFY+T+RVMTVSFHKFGEYFPGTGDV D G+ +GKNYAINFPL+DGMDDE++ S+F+PV+ KVME FAPGA+VLQCGADSLSGDRLGCFNLS+KGHA+ V FV+SF++P+L LGGGGYTLRNVPRCW YET+V+ G  + ++LPF+DY+EY+GPDY LHLPVSNMENLN+K YL   K QL  IL  V P  G QIQTGQ  + + P   ++  +   + +      +PD R      G KEHP E+
Sbjct:   23 TSRRVSYFYDAEVGNYHYGQGHPMKPHRVRMTHNLVVNYGLYKQMDVFRPRLIQSNAMTRFHSDDYINFLKVITPDNMTDFTRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAARLNEDNADVVINWSGGLHHAKKAEASGFCYINDCVLAILELLKKHERVLYIDIDIHHGDGVEEAFYSTNRVMTVSFHKFGEYFPGTGDVLDTGYADGKNYAINFPLNDGMDDEAYHSIFKPVMSKVMEHFAPGAVVLQCGADSLSGDRLGCFNLSVKGHAECVNFVRSFNIPMLVLGGGGYTLRNVPRCWTYETAVVVGEPVNENLPFNDYYEYFGPDYTLHLPVSNMENLNSKEYLSKTKNQLIDILRDVEPVPGTQIQTGQVESQLNPRGVSMEIDEPSKSDGGNGSNNPDERGDSRLDGGKEHPAEL 448          
BLAST of EWM21734.1 vs. NCBI_GenBank
Match: gi|676378147|ref|XP_009032352.1| (hypothetical protein AURANDRAFT_69603 [Aureococcus anophagefferens] >gi|323456832|gb|EGB12698.1| hypothetical protein AURANDRAFT_69603 [Aureococcus anophagefferens])

HSP 1 Score: 646.736 bits (1667), Expect = 0.000e+0
Identity = 315/437 (72.08%), Postives = 350/437 (80.09%), Query Frame = 0
Query:   63 RRISYFYDSDIGNFHYGQGHPMKPHRVRMTHSLVVYYWLYRNMEILRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAALLNQKEADIVINWSGGLHHAKKSEASGFCYVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFPGTGDVSDFGHGNGKNYAINFPLHDGMDDESFVSVFRPVIGKVMETFAPGAIVLQCGADSLSGDRLGCFNLSLKGHADAVAFVKSFDVPVLALGGGGYTLRNVPRCWVYETSVLQGTEIKDDLPFHDYFEYYGPDYKLHLPVSNMENLNTKPYLETIKQQLFTILSQVSPT-GAQIQTGQPGTSMTPPDAALPETAR-----------ERESEMEERD--PDTRVGDGGGGRKEHPLEMM 485
            RR++YFYD++IGNFHYGQGHPMKPHRVRMTH+LVV Y LYR ME+ RPKPV  + MTRFHSDDYINFLR+ITPDNM EY+RQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGA  LNQ+ +D+VINW+GGLHHAKKSEASGFCYVNDCVL ILELLK H RVLYIDIDIHHGDGVEEAFYTT+RVMTVSFHKFGEYFPGTGD  D G+  GKNYAINFPLHDGMDD SF S+F P+IGK+ME FAPGA+VLQCGADSLSGDRLGCFNLSLKGHAD V +V +F VP+L LGGGGYTLRNVPR W YETSVL GTE+KD LP++DYFEYYGPDY+LH+PVSNMENLN+  YLE IK QLF +L  V    G QI++ Q     T  D      A            +  S+ EE D  PD +   G    +EHP E  
Sbjct:    9 RRVAYFYDAEIGNFHYGQGHPMKPHRVRMTHNLVVNYGLYRMMEVFRPKPVNAALMTRFHSDDYINFLRIITPDNMHEYLRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAVRLNQQWSDVVINWAGGLHHAKKSEASGFCYVNDCVLGILELLKRHQRVLYIDIDIHHGDGVEEAFYTTNRVMTVSFHKFGEYFPGTGDAHDVGYDEGKNYAINFPLHDGMDDASFKSIFEPIIGKIMEVFAPGAVVLQCGADSLSGDRLGCFNLSLKGHADCVKYVMTFGVPMLVLGGGGYTLRNVPRVWTYETSVLLGTEVKDVLPYNDYFEYYGPDYRLHMPVSNMENLNSTEYLEHIKTQLFGVLKDVEAVPGVQIKS-QADDMDTSGDGGAAPAAAPVAAALAAAQPDDVSKAEENDNNPDAK---GTSDNREHPAEFF 441          
BLAST of EWM21734.1 vs. NCBI_GenBank
Match: gi|298706465|emb|CBJ29452.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 628.246 bits (1619), Expect = 0.000e+0
Identity = 303/426 (71.13%), Postives = 341/426 (80.05%), Query Frame = 0
Query:   61 TKRRISYFYDSDIGNFHYGQGHPMKPHRVRMTHSLVVYYWLYRNMEILRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAALLNQKEADIVINWSGGLHHAKKSEASGFCYVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFPGTGDVSDFGHGNGKNYAINFPLHDGMDDESFVSVFRPVIGKVMETFAPGAIVLQCGADSLSGDRLGCFNLSLKGHADAVAFVKSFDVPVLALGGGGYTLRNVPRCWVYETSVLQGTEIKDDLPFHDYFEYYGPDYKLHLPVSNMENLNTKPYLETIKQQLFTILSQVSPT-GAQIQTGQPGTSMTPPDAALPETARERESEMEERDPDTRVGDGGGGRKEHPLEMM 485
             KRR+SYFYD++IGN+HYGQGHPMKPHRVRMTH+LVV Y LYR ME+ RPKP+    MTRFHSDDYINFLRVIT DNMQ    QLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGA  LN K++D+VINW+GGLHHAKKSEASGFCYVNDCVLAILELLK H RVLYIDIDIHHGDGVEEAFYTT+RVMTVSFHKFGEYFPGTGDV D G   GKNYAINFPL DG++D+S+ S+FRPVI KVME ++P AIV+QCGADSLSGDRLGCFNLSLKGHAD V +VKSF+VP+L LGGGGYTLRNVPRCW YET VL  TE  D LP++DYFEYYGPDY+LH+P SNME++N +  LE  K QLF IL  +    G  I+TG         +   P T R  E + E  + D R    G GR++H  E +
Sbjct:   11 NKRRVSYFYDAEIGNYHYGQGHPMKPHRVRMTHNLVVNYGLYRQMEVFRPKPISSQHMTRFHSDDYINFLRVITQDNMQHNYTQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAIRLNNKQSDVVINWAGGLHHAKKSEASGFCYVNDCVLAILELLKTHQRVLYIDIDIHHGDGVEEAFYTTNRVMTVSFHKFGEYFPGTGDVKDVGVAQGKNYAINFPLADGINDQSYRSIFRPVIEKVMEHYSPEAIVMQCGADSLSGDRLGCFNLSLKGHADCVQYVKSFNVPLLVLGGGGYTLRNVPRCWAYETGVLLDTEPSDMLPYNDYFEYYGPDYRLHMPTSNMEDMNKRETLEETKIQLFEILRSLEAVPGVPIETGA--------EVKTPATLRMPEEDEEMTEADDR--PTGEGRRQHDAEQV 426          
BLAST of EWM21734.1 vs. NCBI_GenBank
Match: gi|813150521|ref|XP_012200907.1| (histone deacetylase 1 [Saprolegnia parasitica CBS 223.65] >gi|641534521|gb|KDO28468.1| histone deacetylase 1 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 611.298 bits (1575), Expect = 0.000e+0
Identity = 281/370 (75.95%), Postives = 319/370 (86.22%), Query Frame = 0
Query:   61 TKRRISYFYDSDIGNFHYGQGHPMKPHRVRMTHSLVVYYWLYRNMEILRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAALLNQKEADIVINWSGGLHHAKKSEASGFCYVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFPGTGDVSDFGHGNGKNYAINFPLHDGMDDESFVSVFRPVIGKVMETFAPGAIVLQCGADSLSGDRLGCFNLSLKGHADAVAFVKSFDVPVLALGGGGYTLRNVPRCWVYETSVLQGTEIKDDLPFHDYFEYYGPDYKLHLPVSNMENLNTKPYLETIKQQLFTILSQVSPT 430
             K+R+SYFYDS+IGN+HYG  HPMKPHRVRMTH+LV  Y L ++M I RP+ V   ++TRFHSDDYI+FLR +TPDNM  Y+RQLQRFNVGEDCPVFDGLFEFCQL  SGSIGGAA LN K ADIVINW GGLHHAK+SEASGFCYVNDCVL ILELLK H RVLYIDIDIHHGDGVEEAFYTT+RVMTVSFHK+GEYFPGTGD+ D G+G GKNY++NFP  DGMDDESF S+FR VI KVME FAPGA+VLQCGADSLSGDRLGCFNLS+KGH DAVAFVKSF++P+L LGGGGYTLRNVPRCW YETSV  G EI D +P++DYFEY+GP+Y++H+PVSNMENLNT  YL  +K++LF  L Q+ P 
Sbjct:   12 VKKRVSYFYDSEIGNYHYGPNHPMKPHRVRMTHNLVTNYGLTKHMRIFRPQLVGWEDLTRFHSDDYIHFLRTVTPDNMHNYLRQLQRFNVGEDCPVFDGLFEFCQLSASGSIGGAARLNDKSADIVINWGGGLHHAKRSEASGFCYVNDCVLGILELLKEHARVLYIDIDIHHGDGVEEAFYTTNRVMTVSFHKYGEYFPGTGDIKDVGYGEGKNYSVNFPCRDGMDDESFTSIFRAVISKVMEHFAPGAVVLQCGADSLSGDRLGCFNLSVKGHGDAVAFVKSFNIPMLVLGGGGYTLRNVPRCWCYETSVALGVEIPDAMPYNDYFEYFGPEYRVHMPVSNMENLNTPSYLHDMKERLFEQLRQIEPV 381          
BLAST of EWM21734.1 vs. NCBI_GenBank
Match: gi|669168795|ref|XP_008619746.1| (histone deacetylase 1 [Saprolegnia diclina VS20] >gi|530728602|gb|EQC26844.1| histone deacetylase 1 [Saprolegnia diclina VS20])

HSP 1 Score: 608.216 bits (1567), Expect = 0.000e+0
Identity = 280/370 (75.68%), Postives = 318/370 (85.95%), Query Frame = 0
Query:   61 TKRRISYFYDSDIGNFHYGQGHPMKPHRVRMTHSLVVYYWLYRNMEILRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAALLNQKEADIVINWSGGLHHAKKSEASGFCYVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFPGTGDVSDFGHGNGKNYAINFPLHDGMDDESFVSVFRPVIGKVMETFAPGAIVLQCGADSLSGDRLGCFNLSLKGHADAVAFVKSFDVPVLALGGGGYTLRNVPRCWVYETSVLQGTEIKDDLPFHDYFEYYGPDYKLHLPVSNMENLNTKPYLETIKQQLFTILSQVSPT 430
             K+R+SYFYDS+IGN+HYG  HPMKPHRVRMTH+LV  Y L ++M I RP+ V   ++TRFHSDDYI+FLR +TPDNM  Y+RQLQRFNVGEDCPVFDGLFEFCQL  SGSIGGAA LN K ADIVINW GGLHHAK+SEASGFCYVNDCVL ILELLK H RVLYIDIDIHHGDGVEEAFYTT+RVMTVSFHK+GEYFPGTGD+ D G+G GKNY++NFP  DGMDDESF S+FR VI KVME FAPGA+VLQCGADSLSGDRLGCFNLS+KGH D VAFVKSF++P+L LGGGGYTLRNVPRCW YETSV  G EI D +P++DYFEY+GP+Y++H+PVSNMENLNT  YL  +K++LF  L Q+ P 
Sbjct:   12 VKKRVSYFYDSEIGNYHYGPNHPMKPHRVRMTHNLVTNYGLTKHMRIFRPQLVGWEDLTRFHSDDYIHFLRTVTPDNMHNYLRQLQRFNVGEDCPVFDGLFEFCQLSASGSIGGAARLNDKSADIVINWGGGLHHAKRSEASGFCYVNDCVLGILELLKEHARVLYIDIDIHHGDGVEEAFYTTNRVMTVSFHKYGEYFPGTGDIKDVGYGEGKNYSVNFPCRDGMDDESFTSIFRAVISKVMEHFAPGAVVLQCGADSLSGDRLGCFNLSVKGHGDCVAFVKSFNIPMLVLGGGGYTLRNVPRCWCYETSVALGVEIPDAMPYNDYFEYFGPEYRVHMPVSNMENLNTPSYLHDMKERLFEQLRQIEPV 381          
BLAST of EWM21734.1 vs. NCBI_GenBank
Match: gi|397600922|gb|EJK57763.1| (hypothetical protein THAOC_22160 [Thalassiosira oceanica])

HSP 1 Score: 608.216 bits (1567), Expect = 0.000e+0
Identity = 284/406 (69.95%), Postives = 333/406 (82.02%), Query Frame = 0
Query:   84 MKPHRVRMTHSLVVYYWLYRNMEILRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAALLNQKEADIVINWSGGLHHAKKSEASGFCYVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFPGTGDVSDFGHGNGKNYAINFPLHDGMDDESFVSVFRPVIGKVMETFAPGAIVLQCGADSLSGDRLGCFNLSLKGHADAVAFVKSFDVPVLALGGGGYTLRNVPRCWVYETSVLQGTEIKDDLPFHDYFEYYGPDYKLHLPVSNMENLNTKPYLETIKQQLFTILSQVSPT-GAQIQTGQPGTSMTPPDAAL----PETARERESEMEERDPDTRVGDGGGGRKEHPLEM 484
            MKPHRVRMTH+LVV Y LY+ M++ RP+ +  + MTRFHSDDYINFL+VITPDNM +Y RQLQRFNVGEDCPVFDG+FEFCQ+YTSGSIGGAA LN  +ADIV+NWSGGLHHAKK+EASGFCY+NDCVLAILELLK H RVLYIDIDIHHGDGVEEAFY+T+RVMTVSFHKFGEYFPGTGDV D G+  GKN++INFPL+DGMDD S+ SVF+PVI K+ME F+PGA+VLQCGADSLSGDRLGCFNLS+KGH + V FV+SF++P+L LGGGGYTLRNVPRCW YETSV+ G  +KDD+PF+DY+EY+GPDY LHLPVSNMENLN+  YL   K QL  +L ++ P  G QIQTGQ  +++ P   A+    P  A    S  E  +PD R  +   GRKEH  E+
Sbjct:    1 MKPHRVRMTHNLVVNYGLYKKMDVFRPRLINPTAMTRFHSDDYINFLKVITPDNMNDYTRQLQRFNVGEDCPVFDGMFEFCQMYTSGSIGGAARLNDDDADIVVNWSGGLHHAKKAEASGFCYINDCVLAILELLKKHERVLYIDIDIHHGDGVEEAFYSTNRVMTVSFHKFGEYFPGTGDVLDIGYAQGKNFSINFPLNDGMDDASYHSVFKPVISKIMEHFSPGAVVLQCGADSLSGDRLGCFNLSVKGHGECVNFVRSFNIPMLVLGGGGYTLRNVPRCWTYETSVVVGEPVKDDMPFNDYYEYFGPDYSLHLPVSNMENLNSNEYLNRTKNQLIDVLREIEPVPGTQIQTGQVESNLVPLSVAMEIDQPSKADGGNSNNE--NPDARSDERSDGRKEHESEL 404          
The following BLAST results are available for this feature:
BLAST of EWM21734.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102063|gb|EWM21734.1|0.000e+0100.00histone deacetylase 1 [Nannochloropsis gaditana][more]
gi|553190277|ref|XP_005855159.1|0.000e+098.86histone deacetylase 1/2 [Nannochloropsis gaditana ... [more]
gi|219121958|ref|XP_002181323.1|0.000e+074.47histone deacetylase 1 isoform [Phaeodactylum trico... [more]
gi|1072230809|gb|OEU15542.1|0.000e+074.21class I RPD3 type histone deacetylase protein [Fra... [more]
gi|224003547|ref|XP_002291445.1|0.000e+070.42histone deacetylase 1p [Thalassiosira pseudonana C... [more]
gi|676378147|ref|XP_009032352.1|0.000e+072.08hypothetical protein AURANDRAFT_69603 [Aureococcus... [more]
gi|298706465|emb|CBJ29452.1|0.000e+071.13conserved unknown protein [Ectocarpus siliculosus][more]
gi|813150521|ref|XP_012200907.1|0.000e+075.95histone deacetylase 1 [Saprolegnia parasitica CBS ... [more]
gi|669168795|ref|XP_008619746.1|0.000e+075.68histone deacetylase 1 [Saprolegnia diclina VS20] >... [more]
gi|397600922|gb|EJK57763.1|0.000e+069.95hypothetical protein THAOC_22160 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8964rna8964Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications