EWM21769.1, cds8911 (CDS) Nannochloropsis gaditana

Overview
NameEWM21769.1
Unique Namecds8911
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:530586..531360 -
Alignment locationKK037250.1:530276..530322 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21769.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100298g2.7625.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:530586..531360 -
KK037250.1supercontigKK037250.1:530276..530322 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0016043cellular component organization
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005777peroxisome
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
Homology
[Close]
BLAST of EWM21769.1 vs. NCBI_GenBank
Match: gi|585102103|gb|EWM21769.1| (hypothetical protein Naga_100298g2 [Nannochloropsis gaditana])

HSP 1 Score: 545.814 bits (1405), Expect = 0.000e+0
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 0 
Query:    1 MGSGGDVDSYYSGAGALTTPSIPVLLRALEARLSIEEAGRPPCRGSCAPLGSLRSYEILLRYHNKQDQSAKSLGPTNVTTKQRLHGMTLELQRAHRYEAAEALDLVVAWLLRFEEEQERHPHSNGDKGSVFPSSSVLTVLSLLAGAPGLVEESAGIGARNLGPLATGLLTRSRQQTPESDAVLRPEHRSKQGHVPPGPSRRLEVARGGCRHLGETWARTRGEKALEPVLEHPALPTRVASDWNVMGERRLMDGDAHQEGPARPCPPLPGLASG 273
            MGSGGDVDSYYSGAGALTTPSIPVLLRALEARLSIEEAGRPPCRGSCAPLGSLRSYEILLRYHNKQDQSAKSLGPTNVTTKQRLHGMTLELQRAHRYEAAEALDLVVAWLLRFEEEQERHPHSNGDKGSVFPSSSVLTVLSLLAGAPGLVEESAGIGARNLGPLATGLLTRSRQQTPESDAVLRPEHRSKQGHVPPGPSRRLEVARGGCRHLGETWARTRGEKALEPVLEHPALPTRVASDWNVMGERRLMDGDAHQEGPARPCPPLPGLASG
Sbjct:    1 MGSGGDVDSYYSGAGALTTPSIPVLLRALEARLSIEEAGRPPCRGSCAPLGSLRSYEILLRYHNKQDQSAKSLGPTNVTTKQRLHGMTLELQRAHRYEAAEALDLVVAWLLRFEEEQERHPHSNGDKGSVFPSSSVLTVLSLLAGAPGLVEESAGIGARNLGPLATGLLTRSRQQTPESDAVLRPEHRSKQGHVPPGPSRRLEVARGGCRHLGETWARTRGEKALEPVLEHPALPTRVASDWNVMGERRLMDGDAHQEGPARPCPPLPGLASG 273
[Close]
BLAST of EWM21769.1 vs. NCBI_GenBank
Match: gi|553188010|ref|XP_005854717.1| (peroxin-1, partial [Nannochloropsis gaditana CCMP526] >gi|422294344|gb|EKU21644.1| peroxin-1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 518.079 bits (1333), Expect = 4.930e-169
Identity = 258/259 (99.61%), Postives = 258/259 (99.61%), Query Frame = 0 
Query:    1 MGSGGDVDSYYSGAGALTTPSIPVLLRALEARLSIEEAGRPPCRGSCAPLGSLRSYEILLRYHNKQDQSAKSLGPTNVTTKQRLHGMTLELQRAHRYEAAEALDLVVAWLLRFEEEQERHPHSNGDKGSVFPSSSVLTVLSLLAGAPGLVEESAGIGARNLGPLATGLLTRSRQQTPESDAVLRPEHRSKQGHVPPGPSRRLEVARGGCRHLGETWARTRGEKALEPVLEHPALPTRVASDWNVMGERRLMDGDAHQEG 259
            MGSGGDVDSYYSGAGALTTPSIPVLLRALEARLSIEEAGRPPCRGSCAPLGSLRSYEILLRYHNKQDQSAKSLGPTNVTTKQRLHGMTLELQRAHRYEAAEALDLVVAWLLRFEEEQERHPHSNGDKGSVFPSSSVLTVLSLLAGAPGLVEESAGIGARNLGPLATGLLTRSRQQTPESDAVLRPEHRSKQGHVPPGPSRRLEVAR GCRHLGETWARTRGEKALEPVLEHPALPTRVASDWNVMGERRLMDGDAHQEG
Sbjct:    1 MGSGGDVDSYYSGAGALTTPSIPVLLRALEARLSIEEAGRPPCRGSCAPLGSLRSYEILLRYHNKQDQSAKSLGPTNVTTKQRLHGMTLELQRAHRYEAAEALDLVVAWLLRFEEEQERHPHSNGDKGSVFPSSSVLTVLSLLAGAPGLVEESAGIGARNLGPLATGLLTRSRQQTPESDAVLRPEHRSKQGHVPPGPSRRLEVARRGCRHLGETWARTRGEKALEPVLEHPALPTRVASDWNVMGERRLMDGDAHQEG 259
The following BLAST results are available for this feature:
BLAST of EWM21769.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585102103|gb|EWM21769.1|0.000e+0100.00hypothetical protein Naga_100298g2 [Nannochloropsi... [more]
gi|553188010|ref|XP_005854717.1|4.930e-16999.61peroxin-1, partial [Nannochloropsis gaditana CCMP5... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8941rna8941Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications