EWM21766.1, cds8905 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM21766.1
Unique Name	cds8905
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037250.1:519943..519989 +
Alignment location	KK037250.1:520111..520561 +
Alignment location	KK037250.1:520773..522099 +
Alignment location	KK037250.1:522276..522520 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM21766.1
Product	t-complex protein 1 subunit alpha
Orig transcript id	gnl\|cribi\|Naga_100298g8.7622.mrna
Gbkey	CDS
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:519943..519989 +
KK037250.1	supercontig	KK037250.1:520111..520561 +
KK037250.1	supercontig	KK037250.1:520773..522099 +
KK037250.1	supercontig	KK037250.1:522276..522520 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Biological Process**
Term	Definition
GO:0009987	cellular process
GO:0006457	protein folding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0000166	nucleotide binding
GO:0051082	unfolded protein binding
GO:0005524	ATP binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002194	Chaperonin_TCP-1_CS
IPR027413	GROEL-like_equatorial
IPR002423	Cpn60/TCP-1
IPR027409	GroEL-like_apical_dom
IPR027410	TCP-1-like_intermed
IPR017998	Chaperone_TCP-1

Homology

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BLAST of EWM21766.1 vs. NCBI_GenBank
Match: gi|585102100|gb|EWM21766.1| (t-complex protein 1 subunit alpha [Nannochloropsis gaditana])

HSP 1 Score: 1396.33 bits (3613), Expect = 0.000e+0
Identity = 689/689 (100.00%), Postives = 689/689 (100.00%), Query Frame = 0

Query:    1 MVHYLRMHRPSCPLIKTQYYIMAASAGQMLLDGQRTSGQDVRTANVTASMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILQQLEVEHPAAKVLVELAHLQDQEVGDGTTSVVIVAAELLKRGNELVMNKVHPTSIMSGYRLALKEAVRFIKDKLVVSVDQLRQENLLNAARTSMSSKILGAEADFFAKLAVEAVLSVKTDSQHRDSGKTVSKYPVSAIHILKCHGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGVSVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYFVEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAERVEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIKRMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPRTLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMVEDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIKLTEKSPGPPDGRGEGKIVWKVSVSADVQGTSDVSPACLVVNVEGGGTLGDKQAGEVDGSDRERCARGSVLGKEGSNLRSETQTGGLFMDGFR 689
            MVHYLRMHRPSCPLIKTQYYIMAASAGQMLLDGQRTSGQDVRTANVTASMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILQQLEVEHPAAKVLVELAHLQDQEVGDGTTSVVIVAAELLKRGNELVMNKVHPTSIMSGYRLALKEAVRFIKDKLVVSVDQLRQENLLNAARTSMSSKILGAEADFFAKLAVEAVLSVKTDSQHRDSGKTVSKYPVSAIHILKCHGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGVSVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYFVEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAERVEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIKRMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPRTLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMVEDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIKLTEKSPGPPDGRGEGKIVWKVSVSADVQGTSDVSPACLVVNVEGGGTLGDKQAGEVDGSDRERCARGSVLGKEGSNLRSETQTGGLFMDGFR
Sbjct:    1 MVHYLRMHRPSCPLIKTQYYIMAASAGQMLLDGQRTSGQDVRTANVTASMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILQQLEVEHPAAKVLVELAHLQDQEVGDGTTSVVIVAAELLKRGNELVMNKVHPTSIMSGYRLALKEAVRFIKDKLVVSVDQLRQENLLNAARTSMSSKILGAEADFFAKLAVEAVLSVKTDSQHRDSGKTVSKYPVSAIHILKCHGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGVSVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYFVEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAERVEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIKRMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPRTLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMVEDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIKLTEKSPGPPDGRGEGKIVWKVSVSADVQGTSDVSPACLVVNVEGGGTLGDKQAGEVDGSDRERCARGSVLGKEGSNLRSETQTGGLFMDGFR 689

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BLAST of EWM21766.1 vs. NCBI_GenBank
Match: gi|553188006|ref|XP_005854716.1| (t-complex protein 1 subunit alpha [Nannochloropsis gaditana CCMP526] >gi|422294343|gb|EKU21643.1| t-complex protein 1 subunit alpha [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1180.62 bits (3053), Expect = 0.000e+0
Identity = 588/589 (99.83%), Postives = 588/589 (99.83%), Query Frame = 0

Query:   22 MAASAGQMLLDGQRTSGQDVRTANVTASMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILQQLEVEHPAAKVLVELAHLQDQEVGDGTTSVVIVAAELLKRGNELVMNKVHPTSIMSGYRLALKEAVRFIKDKLVVSVDQLRQENLLNAARTSMSSKILGAEADFFAKLAVEAVLSVKTDSQHRDSGKTVSKYPVSAIHILKCHGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGVSVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYFVEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAERVEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIKRMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPRTLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMVEDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIKLTEKSPGPPDGRG 610
            MAASAGQMLLDGQRTSGQDVRTANVTASMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILQQLEVEHPAAKVLVELAHLQDQEVGDGTTSVVIVAAELLKRGNELVMNKVHPTSIMSGYRLALKEAVRFIKDKLVVSVDQLRQENLLNAARTSMSSKILGAEADFFAKLAVEAVLSVK DSQHRDSGKTVSKYPVSAIHILKCHGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGVSVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYFVEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAERVEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIKRMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPRTLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMVEDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIKLTEKSPGPPDGRG
Sbjct:    1 MAASAGQMLLDGQRTSGQDVRTANVTASMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILQQLEVEHPAAKVLVELAHLQDQEVGDGTTSVVIVAAELLKRGNELVMNKVHPTSIMSGYRLALKEAVRFIKDKLVVSVDQLRQENLLNAARTSMSSKILGAEADFFAKLAVEAVLSVKADSQHRDSGKTVSKYPVSAIHILKCHGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGVSVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYFVEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAERVEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIKRMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPRTLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMVEDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIKLTEKSPGPPDGRG 589

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BLAST of EWM21766.1 vs. NCBI_GenBank
Match: gi|585102101|gb|EWM21767.1| (t-complex protein 1 subunit alpha [Nannochloropsis gaditana])

HSP 1 Score: 1032.32 bits (2668), Expect = 0.000e+0
Identity = 510/510 (100.00%), Postives = 510/510 (100.00%), Query Frame = 0

Query:  180 MSSKILGAEADFFAKLAVEAVLSVKTDSQHRDSGKTVSKYPVSAIHILKCHGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGVSVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYFVEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAERVEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIKRMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPRTLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMVEDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIKLTEKSPGPPDGRGEGKIVWKVSVSADVQGTSDVSPACLVVNVEGGGTLGDKQAGEVDGSDRERCARGSVLGKEGSNLRSETQTGGLFMDGFR 689
            MSSKILGAEADFFAKLAVEAVLSVKTDSQHRDSGKTVSKYPVSAIHILKCHGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGVSVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYFVEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAERVEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIKRMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPRTLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMVEDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIKLTEKSPGPPDGRGEGKIVWKVSVSADVQGTSDVSPACLVVNVEGGGTLGDKQAGEVDGSDRERCARGSVLGKEGSNLRSETQTGGLFMDGFR
Sbjct:    1 MSSKILGAEADFFAKLAVEAVLSVKTDSQHRDSGKTVSKYPVSAIHILKCHGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGVSVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYFVEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAERVEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIKRMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPRTLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMVEDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIKLTEKSPGPPDGRGEGKIVWKVSVSADVQGTSDVSPACLVVNVEGGGTLGDKQAGEVDGSDRERCARGSVLGKEGSNLRSETQTGGLFMDGFR 510

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BLAST of EWM21766.1 vs. NCBI_GenBank
Match: gi|698814768|ref|XP_009840413.1| (T-complex protein 1, alpha subunit [Aphanomyces astaci] >gi|574104439|gb|ETV69970.1| T-complex protein 1, alpha subunit [Aphanomyces astaci])

HSP 1 Score: 775.393 bits (2001), Expect = 0.000e+0
Identity = 395/573 (68.94%), Postives = 462/573 (80.63%), Query Frame = 0

Query:   29 MLLDGQRTSGQDVRTANVTASMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILQQLEVEHPAAKVLVELAHLQDQEVGDGTTSVVIVAAELLKRGNELVMNKVHPTSIMSGYRLALKEAVRFIKDKLVVSVDQLRQENLLNAARTSMSSKILGAEADFFAKLAVEAVLSVKTDSQHRDSGKTVSKYPVSAIHILKCHGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGVSVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYFVEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAERVEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIKRMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPRTLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMVEDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIKLTEK 601
            +++DG+RTSG+DVR  NVTA++AIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATIL+ LEVEHPA KVLV+LA LQDQEVGDGTTSVVI+AAELLKR NELV NKVHPTSI+SGYRLA++EAV++IK+ L V VD L + +L+NAA+TSMSSKI+G E+DFFA L V+AV SVKT ++    GKT++KYPVSAI++LK HG+S+L S LV+GFAL   RA+Q MP+SV PAKIALLDF LQRHKMQMGV +VV D KE++ IRQRE+DITKERIQKIL+AGANV+LTTKGIDDL MKYFVEAG M VRR KKEDL+RIA+ATGGQV+ TLADMEG E FD + LG A  V E RVGDGE++YI G    +A TVVLRGAN+ +LDEMDR+LHD+LMV+KR+LESN LVAGGGAVEAALS++LE YA TLGS+EQLAIA F+DALLVIP+TLAVNAA+DA+ELVA LRA H  +Q                                       A+  + ++GLDL +G VRNNL AGVVEPAISKIKSLRFATEAAITILRIDDMI+L  K
Sbjct:    3 LVVDGKRTSGKDVREQNVTAALAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAGKVLVDLAGLQDQEVGDGTTSVVIIAAELLKRANELVQNKVHPTSIISGYRLAMREAVKYIKEHLSVPVDSLGRASLVNAAKTSMSSKIIGPESDFFANLVVDAVTSVKT-TEDGAKGKTITKYPVSAINVLKAHGKSALESQLVDGFALNCTRASQAMPSSVRPAKIALLDFDLQRHKMQMGVQMVVNDPKELDQIRQREIDITKERIQKILDAGANVILTTKGIDDLCMKYFVEAGCMGVRRCKKEDLRRIAKATGGQVVLTLADMEGGETFDAAALGTAAEVSEERVGDGELIYIKGCANRQATTVVLRGANEMLLDEMDRSLHDSLMVVKRLLESNQLVAGGGAVEAALSIYLETYATTLGSREQLAIAEFADALLVIPKTLAVNAAKDASELVARLRAHHNTSQTD------------------------------------AAQTDLRFSGLDLLQGKVRNNLVAGVVEPAISKIKSLRFATEAAITILRIDDMIRLNPK 538

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BLAST of EWM21766.1 vs. NCBI_GenBank
Match: gi|673045993|ref|XP_008876957.1| (T-complex protein 1, alpha subunit [Aphanomyces invadans] >gi|574467171|gb|ETV94195.1| T-complex protein 1, alpha subunit [Aphanomyces invadans])

HSP 1 Score: 771.926 bits (1992), Expect = 0.000e+0
Identity = 393/573 (68.59%), Postives = 462/573 (80.63%), Query Frame = 0

Query:   29 MLLDGQRTSGQDVRTANVTASMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILQQLEVEHPAAKVLVELAHLQDQEVGDGTTSVVIVAAELLKRGNELVMNKVHPTSIMSGYRLALKEAVRFIKDKLVVSVDQLRQENLLNAARTSMSSKILGAEADFFAKLAVEAVLSVKTDSQHRDSGKTVSKYPVSAIHILKCHGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGVSVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYFVEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAERVEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIKRMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPRTLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMVEDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIKLTEK 601
            +++DG+RTSG+DVR  NVTA++AIANIVKSSLGPVGLDKMLVD+IGDVTITNDGATIL+ LEVEHPA KVLVELA LQDQEVGDGTTSVVI+AAELLKR NELV NK+HPTSI+SGYRLA++EAV++IK+ L V VD L + +L+NAA+TSMSSKI+G E++FFA L V+AV SVKT ++    GK V+KYPVSAI++LK HG+S+L S LV+GFAL   RA+Q MPTSV PAKIALLDF LQRHKMQMGV +VV D KE++ IRQRE+DITKERIQKIL+AGANV+LTTKGIDDL MKYFVEAG M VRR KKEDL+RIA+ATGGQV+ TLADM+G E FD + LG A  V E RVGDGE++YI G    +A TVVLRGAN+ +LDEMDR+LHD+LMV+KRMLESN LVAGGGAVE+ALS++LE YA TLGS+EQLAIA F+DALLVIP+TLAVNAA+DA+ELVA LRA H  +Q                                       A+  + ++GLDL +G VR+NLAAGVVEPAISKIKSLRFATEAAITILRIDDMI+L  K
Sbjct:    3 LVVDGKRTSGKDVREQNVTAALAIANIVKSSLGPVGLDKMLVDNIGDVTITNDGATILKMLEVEHPAGKVLVELAGLQDQEVGDGTTSVVIIAAELLKRANELVQNKIHPTSIISGYRLAMREAVKYIKEHLSVPVDSLGRTSLVNAAKTSMSSKIIGPESEFFANLVVDAVTSVKT-TEEGAKGKVVTKYPVSAINVLKAHGKSALESQLVDGFALNCTRASQAMPTSVRPAKIALLDFDLQRHKMQMGVQMVVNDPKELDQIRQREVDITKERIQKILDAGANVILTTKGIDDLCMKYFVEAGCMGVRRCKKEDLRRIAKATGGQVVLTLADMDGGETFDAASLGTAAEVSEERVGDGELIYIKGCANRQATTVVLRGANEMLLDEMDRSLHDSLMVVKRMLESNQLVAGGGAVESALSIYLETYATTLGSREQLAIAEFADALLVIPKTLAVNAAKDASELVARLRAHHNTSQTD------------------------------------AAQTALRFSGLDLQRGNVRDNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIRLNPK 538

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BLAST of EWM21766.1 vs. NCBI_GenBank
Match: gi|299473185|emb|CBN78761.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 770 bits (1987), Expect = 0.000e+0
Identity = 393/577 (68.11%), Postives = 459/577 (79.55%), Query Frame = 0

Query:   33 GQRTSGQDVRTANVTASMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILQQLEVEHPAAKVLVELAHLQDQEVGDGTTSVVIVAAELLKRGNELVMNKVHPTSIMSGYRLALKEAVRFIKDKLVVSVDQLRQENLLNAARTSMSSKILGAEADFFAKLAVEAVLSVKTDSQHRDSGKTVSKYPVSAIHILKCHGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGVSVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYFVEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAERVEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIKRMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPRTLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMVEDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIKLTEKSPGPPDGR 609
            G RT GQDVRT NVTA+ AIANIVKSSLGPVGLDKMLVD++GDVTITNDGATIL+QL+VEHPAAKVLVELA LQDQEVGDGTTSVVIVAAELLKR NEL+ N +HPT++M+GYRLALKEAV++IK  L V VD+L + NL+NAA+T+MSSKILG E+DFFA++AV+AV +V+T+S   D GK V KYPVSA+HILKCHG S L S +  G+AL   RA+QGMPTSV  AKIA LD +LQR+KMQMGV VVV DVKEV+ IRQREMDITKERI+KIL +GA VVLTTKGIDDL +KYFVEAGAMAVRRVKKED++RIA+ATG  ++ TLADMEGNE FDP +LG A+ V E+RVGDGE+++  G K   + TVVLRGAND+MLDEMDRALHD+LMVIKRMLESN LVAGGG+VE ALS++LE +A TLGS+EQLAIA F++ALLVIP+TLAVNAAQDATELVA LRA H  +Q Q+ +   +                                    + GL+L +G VR+NLA GVVEPAISKIKS RFATEAAITILRIDDMIKL ++    P  R
Sbjct:    2 GDRTMGQDVRTQNVTAATAIANIVKSSLGPVGLDKMLVDEVGDVTITNDGATILKQLDVEHPAAKVLVELADLQDQEVGDGTTSVVIVAAELLKRANELIKNNIHPTTVMAGYRLALKEAVKYIKANLCVPVDKLGRPNLINAAKTAMSSKILGPESDFFAEMAVDAVTAVRTESGG-DLGKKVVKYPVSAVHILKCHGLSLLDSKVEPGYALNCVRASQGMPTSVQNAKIACLDINLQRYKMQMGVQVVVNDVKEVDAIRQREMDITKERIEKILSSGATVVLTTKGIDDLCLKYFVEAGAMAVRRVKKEDMRRIAKATGASIVTTLADMEGNETFDPEVLGQADEVSEQRVGDGELIFFKGTKTQASCTVVLRGANDFMLDEMDRALHDSLMVIKRMLESNVLVAGGGSVETALSIYLESFATTLGSREQLAIAEFAEALLVIPKTLAVNAAQDATELVAKLRAYHNTSQLQEDKTEYR------------------------------------HYGLELVEGKVRDNLACGVVEPAISKIKSFRFATEAAITILRIDDMIKLDKQEQEDPRAR 541

[Close]

BLAST of EWM21766.1 vs. NCBI_GenBank
Match: gi|301119511|ref|XP_002907483.1| (T-complex protein 1 subunit alpha [Phytophthora infestans T30-4] >gi|262105995|gb|EEY64047.1| T-complex protein 1 subunit alpha [Phytophthora infestans T30-4])

HSP 1 Score: 766.533 bits (1978), Expect = 0.000e+0
Identity = 389/573 (67.89%), Postives = 458/573 (79.93%), Query Frame = 0

Query:   29 MLLDGQRTSGQDVRTANVTASMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILQQLEVEHPAAKVLVELAHLQDQEVGDGTTSVVIVAAELLKRGNELVMNKVHPTSIMSGYRLALKEAVRFIKDKLVVSVDQLRQENLLNAARTSMSSKILGAEADFFAKLAVEAVLSVKTDSQHRDSGKTVSKYPVSAIHILKCHGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGVSVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYFVEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAERVEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIKRMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPRTLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMVEDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIKLTEK 601
            +++DG RTSG+DVR  NVTA++AIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATIL+QLEVE PA KVLVELA LQDQEVGDGTTSVVI+AAELLKR NELV NK+HPTSI++GYRLA++EAV++IK+ L V VD L +E+L+NAA+TSMSSKILG E+DFFA L V+AV SV+ + Q    GK  +KYPVS+I++LK HG+S+L + LV+GFAL   +A+Q MPT +  AKIALLDF LQRH+MQMGV VVV D  E+ELIRQRE+DITKE+IQKI++AGANV+LTTKGIDDL +KYFVE+G M VRR KKEDL+RIA+ATGGQV+ TLADMEG E FDPS LG A+ V E RVGDGE++YI G K  +A TVVLRGAN+ MLDEMDR++HDA MV+KRMLESN LVAGGGAVEAALS++LE +A TLGS+EQLAIA F+DALLVIP+TLAVNAA+DA+ELVA LRA H  +Q    Q                                      + ++GLDL +G VRNNL AGVVEPAISKIKSLRFATEAAITILRIDD+IKL  K
Sbjct:    6 LVVDGTRTSGKDVREQNVTAAVAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKQLEVEQPAGKVLVELAGLQDQEVGDGTTSVVIIAAELLKRANELVKNKIHPTSIIAGYRLAMREAVKYIKENLSVPVDSLGRESLVNAAKTSMSSKILGPESDFFANLVVDAVSSVRVE-QEGAKGKIKAKYPVSSINVLKAHGKSALETQLVDGFALNCTKASQQMPTYIKNAKIALLDFDLQRHRMQMGVQVVVNDPNELELIRQREIDITKEKIQKIIDAGANVILTTKGIDDLCLKYFVESGCMGVRRCKKEDLQRIAKATGGQVVLTLADMEGEETFDPSTLGEAQEVSEERVGDGELIYIKGCKTRQATTVVLRGANENMLDEMDRSMHDAFMVVKRMLESNQLVAGGGAVEAALSIYLENFATTLGSREQLAIAEFADALLVIPKTLAVNAAKDASELVARLRAHHNTSQSDASQRE------------------------------------LRFSGLDLLEGTVRNNLEAGVVEPAISKIKSLRFATEAAITILRIDDLIKLNPK 541

[Close]

BLAST of EWM21766.1 vs. NCBI_GenBank
Match: gi|567977518|gb|ETL28020.1| (T-complex protein 1, alpha subunit [Phytophthora parasitica])

HSP 1 Score: 766.148 bits (1977), Expect = 0.000e+0
Identity = 388/573 (67.71%), Postives = 459/573 (80.10%), Query Frame = 0

Query:   29 MLLDGQRTSGQDVRTANVTASMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILQQLEVEHPAAKVLVELAHLQDQEVGDGTTSVVIVAAELLKRGNELVMNKVHPTSIMSGYRLALKEAVRFIKDKLVVSVDQLRQENLLNAARTSMSSKILGAEADFFAKLAVEAVLSVKTDSQHRDSGKTVSKYPVSAIHILKCHGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGVSVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYFVEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAERVEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIKRMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPRTLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMVEDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIKLTEK 601
            +++DG RTSG+DVR  NVTA++AIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATIL+QLEVE PA KVLVELA LQDQEVGDGTTSVVI+AAELLKR NELV NK+HPTSI++GYRLA++EAV++IK+ L V VD L +E+L+NAA+TSMSSKILG E+DFFA L V+AV SVK + Q    GK  +KYPVS+I++LK HG+S+L + LV+GFAL   +A+Q MPT +  AKIALLDF LQRH+MQMGV VVV D  E+ELIRQRE+DITKE+IQK+++AGANV+LTTKGIDDL +KYFVE+G M VRR KKEDL+RIA+ATGGQV+ TLADMEG E FDPS LG A+ V E RVGDGE++YI G K  +A TVVLRGAN+ MLDEMDR++HDA MV+KRMLESN LVAGGGAVEAALS++LE +A TLGS+EQLAIA F+D+LLVIP+TLAVNAA+DA+ELVA LRA H  +Q                                       A+  + ++GLDL +G VRNNL AGVVEPAISKIKSLRFATEAAITILRIDD+IKL  K
Sbjct:    6 LVVDGTRTSGKDVREQNVTAAVAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKQLEVEQPAGKVLVELAGLQDQEVGDGTTSVVIIAAELLKRANELVKNKIHPTSIIAGYRLAMREAVKYIKENLSVPVDSLGRESLVNAAKTSMSSKILGPESDFFANLVVDAVSSVKVE-QEGAKGKIKAKYPVSSINVLKAHGKSALETQLVDGFALNCTKASQQMPTYIKNAKIALLDFDLQRHRMQMGVQVVVNDPNELELIRQREIDITKEKIQKMIDAGANVILTTKGIDDLCLKYFVESGCMGVRRCKKEDLQRIAKATGGQVVLTLADMEGEETFDPSTLGEAQEVSEERVGDGELIYIKGCKTRQATTVVLRGANENMLDEMDRSMHDAFMVVKRMLESNQLVAGGGAVEAALSIYLENFATTLGSREQLAIAEFADSLLVIPKTLAVNAAKDASELVARLRAHHNTSQSD------------------------------------AAQRKLRFSGLDLLEGTVRNNLEAGVVEPAISKIKSLRFATEAAITILRIDDLIKLNPK 541

[Close]

BLAST of EWM21766.1 vs. NCBI_GenBank
Match: gi|675176381|ref|XP_008897075.1| (T-complex protein 1, alpha subunit [Phytophthora parasitica INRA-310] >gi|566011325|gb|ETI34236.1| T-complex protein 1, alpha subunit [Phytophthora parasitica P1569] >gi|567948861|gb|ETK74598.1| T-complex protein 1, alpha subunit [Phytophthora parasitica] >gi|568007031|gb|ETL81276.1| T-complex protein 1, alpha subunit [Phytophthora parasitica] >gi|568036882|gb|ETM34482.1| T-complex protein 1, alpha subunit [Phytophthora parasitica] >gi|568102853|gb|ETN17524.1| T-complex protein 1, alpha subunit [Phytophthora parasitica INRA-310] >gi|570315043|gb|ETO62991.1| T-complex protein 1, alpha subunit [Phytophthora parasitica P1976] >gi|570938874|gb|ETP04131.1| T-complex protein 1, alpha subunit [Phytophthora parasitica CJ01A1] >gi|570969090|gb|ETP32209.1| T-complex protein 1, alpha subunit [Phytophthora parasitica P10297] >gi|970619023|gb|KUF67065.1| T-complex protein 1 subunit alpha [Phytophthora nicotianae] >gi|970660841|gb|KUF98359.1| Axonemal dynein light intermediate polypeptide 1 [Phytophthora nicotianae])

HSP 1 Score: 765.763 bits (1976), Expect = 0.000e+0
Identity = 388/573 (67.71%), Postives = 459/573 (80.10%), Query Frame = 0

Query:   29 MLLDGQRTSGQDVRTANVTASMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILQQLEVEHPAAKVLVELAHLQDQEVGDGTTSVVIVAAELLKRGNELVMNKVHPTSIMSGYRLALKEAVRFIKDKLVVSVDQLRQENLLNAARTSMSSKILGAEADFFAKLAVEAVLSVKTDSQHRDSGKTVSKYPVSAIHILKCHGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGVSVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYFVEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAERVEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIKRMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPRTLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMVEDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIKLTEK 601
            +++DG RTSG+DVR  NVTA++AIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATIL+QLEVE PA KVLVELA LQDQEVGDGTTSVVI+AAELLKR NELV NK+HPTSI++GYRLA++EAV++IK+ L V VD L +E+L+NAA+TSMSSKILG E+DFFA L V+AV SVK + Q    GK  +KYPVS+I++LK HG+S+L + LV+GFAL   +A+Q MPT +  AKIALLDF LQRH+MQMGV VVV D  E+ELIRQRE+DITKE+IQK+++AGANV+LTTKGIDDL +KYFVE+G M VRR KKEDL+RIA+ATGGQV+ TLADMEG E FDPS LG A+ V E RVGDGE++YI G K  +A TVVLRGAN+ MLDEMDR++HDA MV+KRMLESN LVAGGGAVEAALS++LE +A TLGS+EQLAIA F+D+LLVIP+TLAVNAA+DA+ELVA LRA H  +Q                                       A+  + ++GLDL +G VRNNL AGVVEPAISKIKSLRFATEAAITILRIDD+IKL  K
Sbjct:    6 LVVDGTRTSGKDVREQNVTAAVAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKQLEVEQPAGKVLVELAGLQDQEVGDGTTSVVIIAAELLKRANELVKNKIHPTSIIAGYRLAMREAVKYIKENLSVPVDSLGRESLVNAAKTSMSSKILGPESDFFANLVVDAVSSVKVE-QEGAKGKIKAKYPVSSINVLKAHGKSALETQLVDGFALNCTKASQQMPTYIKNAKIALLDFDLQRHRMQMGVQVVVNDPNELELIRQREIDITKEKIQKMIDAGANVILTTKGIDDLCLKYFVESGCMGVRRCKKEDLQRIAKATGGQVVLTLADMEGEETFDPSTLGEAQEVSEERVGDGELIYIKGCKTRQATTVVLRGANENMLDEMDRSMHDAFMVVKRMLESNQLVAGGGAVEAALSIYLENFATTLGSREQLAIAEFADSLLVIPKTLAVNAAKDASELVARLRAHHNTSQSD------------------------------------AAQRELRFSGLDLLEGTVRNNLEAGVVEPAISKIKSLRFATEAAITILRIDDLIKLNPK 541

[Close]

BLAST of EWM21766.1 vs. NCBI_GenBank
Match: gi|695384381|ref|XP_009517985.1| (hypothetical protein PHYSODRAFT_553624 [Phytophthora sojae] >gi|348690896|gb|EGZ30710.1| hypothetical protein PHYSODRAFT_553624 [Phytophthora sojae])

HSP 1 Score: 765.763 bits (1976), Expect = 0.000e+0
Identity = 389/573 (67.89%), Postives = 458/573 (79.93%), Query Frame = 0

Query:   29 MLLDGQRTSGQDVRTANVTASMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILQQLEVEHPAAKVLVELAHLQDQEVGDGTTSVVIVAAELLKRGNELVMNKVHPTSIMSGYRLALKEAVRFIKDKLVVSVDQLRQENLLNAARTSMSSKILGAEADFFAKLAVEAVLSVKTDSQHRDSGKTVSKYPVSAIHILKCHGQSSLSSHLVNGFALAGARAAQGMPTSVSPAKIALLDFSLQRHKMQMGVSVVVEDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGIDDLAMKYFVEAGAMAVRRVKKEDLKRIARATGGQVIGTLADMEGNEAFDPSMLGLAERVEERRVGDGEMLYILGAKEGKAATVVLRGANDYMLDEMDRALHDALMVIKRMLESNSLVAGGGAVEAALSVHLEKYAMTLGSKEQLAIAAFSDALLVIPRTLAVNAAQDATELVANLRAAHFGAQQQQQQPSSQPSQVPPERAGGGAAMVEDGGGEISKKAGGGAEEGMWYAGLDLYKGLVRNNLAAGVVEPAISKIKSLRFATEAAITILRIDDMIKLTEK 601
            +++DG RTSG+DVR  NVTA++AIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATIL+QLEVE PA KVLVELA LQDQEVGDGTTSVVI+AAELLKR NELV NK+HPTSI++GYRLA++EAV++IK+ L V VD L +E+L+NAA+TSMSSKILG E+DFFA L V+AV SVK + Q    GK  +KYPVS+I++LK HG+S+L + LV+GFAL   +A+Q MPT +  AKIALLDF LQRH+MQMGV VVV D  E+ELIRQRE+DITKE+IQK+++AGANV+LTTKGIDDL +KYFVE G M VRR KKEDL+RIA+ATGGQV+ TLADMEG E FDPS LG A+ V E RVGDGE++YI G K  +A TVVLRGAN+ MLDEMDR++HD+ MV+KRMLESN LVAGGGAVEAALS++LE +A TLGS+EQLAIA F+DALLVIP+TLAVNAA+DA+ELVA LRA H  +Q                                       AE  + ++GLDL +G VRNNL AGVVEPAISKIKSLRFATEAAITILRIDD+IKL  K
Sbjct:    6 LVVDGTRTSGKDVREQNVTAAVAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKQLEVEQPAGKVLVELAGLQDQEVGDGTTSVVIIAAELLKRANELVKNKIHPTSIIAGYRLAMREAVKYIKENLSVPVDSLGRESLVNAAKTSMSSKILGPESDFFANLVVDAVSSVKVE-QEGAKGKIKAKYPVSSINVLKAHGKSALETQLVDGFALNCTKASQQMPTYIKNAKIALLDFDLQRHRMQMGVQVVVNDPNELELIRQREIDITKEKIQKMIDAGANVILTTKGIDDLCLKYFVENGCMGVRRCKKEDLQRIAKATGGQVVLTLADMEGEETFDPSTLGEAQEVSEERVGDGELIYIKGCKTRQATTVVLRGANENMLDEMDRSMHDSFMVVKRMLESNQLVAGGGAVEAALSIYLENFATTLGSREQLAIAEFADALLVIPKTLAVNAAKDASELVARLRAHHNTSQSD------------------------------------AAESELRFSGLDLLEGNVRNNLEAGVVEPAISKIKSLRFATEAAITILRIDDLIKLNPK 541

The following BLAST results are available for this feature:

BLAST of EWM21766.1 vs. NCBI_GenBank

BLAST of EWM21766.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|585102100\|gb\|EWM21766.1\|	0.000e+0	100.00	t-complex protein 1 subunit alpha [Nannochloropsis...	[more]
gi\|553188006\|ref\|XP_005854716.1\|	0.000e+0	99.83	t-complex protein 1 subunit alpha [Nannochloropsis...	[more]
gi\|585102101\|gb\|EWM21767.1\|	0.000e+0	100.00	t-complex protein 1 subunit alpha [Nannochloropsis...	[more]
gi\|698814768\|ref\|XP_009840413.1\|	0.000e+0	68.94	T-complex protein 1, alpha subunit [Aphanomyces as...	[more]
gi\|673045993\|ref\|XP_008876957.1\|	0.000e+0	68.59	T-complex protein 1, alpha subunit [Aphanomyces in...	[more]
gi\|299473185\|emb\|CBN78761.1\|	0.000e+0	68.11	conserved unknown protein [Ectocarpus siliculosus]	[more]
gi\|301119511\|ref\|XP_002907483.1\|	0.000e+0	67.89	T-complex protein 1 subunit alpha [Phytophthora in...	[more]
gi\|567977518\|gb\|ETL28020.1\|	0.000e+0	67.71	T-complex protein 1, alpha subunit [Phytophthora p...	[more]
gi\|675176381\|ref\|XP_008897075.1\|	0.000e+0	67.71	T-complex protein 1, alpha subunit [Phytophthora p...	[more]
gi\|695384381\|ref\|XP_009517985.1\|	0.000e+0	67.89	hypothetical protein PHYSODRAFT_553624 [Phytophtho...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna8935	rna8935	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications