EWM21783.1, cds8892 (CDS) Nannochloropsis gaditana

Overview
NameEWM21783.1
Unique Namecds8892
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:493276..494511 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21783.1
Productconserved unknown protein
Orig transcript idgnl|cribi|Naga_100188g3.2466.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:493276..494511 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR013830SGNH_hydro
Homology
BLAST of EWM21783.1 vs. NCBI_GenBank
Match: gi|585102118|gb|EWM21783.1| (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 838.565 bits (2165), Expect = 0.000e+0
Identity = 411/411 (100.00%), Postives = 411/411 (100.00%), Query Frame = 0
Query:    1 MSLRSSASATTKGQRNYRSMLRRVWQFLLDRFLVSFNGLITVWRLALHWVNSYILYYDYGGKPANDFHHKAVLIGDGLAQGFGSWVSLGNTSGPMRYLNEEVRRNAAVKMEWVFFERGALHSTTQDWMPHESENKGVGTSEAARPEPQGEIRGDHPESEDSSLLQPLPAIKPPRSLLDAVLSSRSGRDACVYIVMVGLQDLLRTKDAGALSALAAGGDGATQTGRILPSTALGTNSETHGMDREPSSARPWCRTVSHLRAILLHLLAQPHSPHVCLCTLPTVGVPSSLRARAIKGVNAQIASMVRSLPPVPSPASHPQAPRPPVTLVDLSQRRVSRPEGRALDGVHFNSTGYKSMATAVLEELAPVMVRHEWAILQGFLSGKKRRDKRRPDGWLGGWLRRGGREGEKEKVG 411
            MSLRSSASATTKGQRNYRSMLRRVWQFLLDRFLVSFNGLITVWRLALHWVNSYILYYDYGGKPANDFHHKAVLIGDGLAQGFGSWVSLGNTSGPMRYLNEEVRRNAAVKMEWVFFERGALHSTTQDWMPHESENKGVGTSEAARPEPQGEIRGDHPESEDSSLLQPLPAIKPPRSLLDAVLSSRSGRDACVYIVMVGLQDLLRTKDAGALSALAAGGDGATQTGRILPSTALGTNSETHGMDREPSSARPWCRTVSHLRAILLHLLAQPHSPHVCLCTLPTVGVPSSLRARAIKGVNAQIASMVRSLPPVPSPASHPQAPRPPVTLVDLSQRRVSRPEGRALDGVHFNSTGYKSMATAVLEELAPVMVRHEWAILQGFLSGKKRRDKRRPDGWLGGWLRRGGREGEKEKVG
Sbjct:    1 MSLRSSASATTKGQRNYRSMLRRVWQFLLDRFLVSFNGLITVWRLALHWVNSYILYYDYGGKPANDFHHKAVLIGDGLAQGFGSWVSLGNTSGPMRYLNEEVRRNAAVKMEWVFFERGALHSTTQDWMPHESENKGVGTSEAARPEPQGEIRGDHPESEDSSLLQPLPAIKPPRSLLDAVLSSRSGRDACVYIVMVGLQDLLRTKDAGALSALAAGGDGATQTGRILPSTALGTNSETHGMDREPSSARPWCRTVSHLRAILLHLLAQPHSPHVCLCTLPTVGVPSSLRARAIKGVNAQIASMVRSLPPVPSPASHPQAPRPPVTLVDLSQRRVSRPEGRALDGVHFNSTGYKSMATAVLEELAPVMVRHEWAILQGFLSGKKRRDKRRPDGWLGGWLRRGGREGEKEKVG 411          
BLAST of EWM21783.1 vs. NCBI_GenBank
Match: gi|553193089|ref|XP_005855707.1| (hypothetical protein NGA_2029600, partial [Nannochloropsis gaditana CCMP526] >gi|422293353|gb|EKU20653.1| hypothetical protein NGA_2029600, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 531.946 bits (1369), Expect = 0.000e+0
Identity = 257/259 (99.23%), Postives = 259/259 (100.00%), Query Frame = 0
Query:    1 MSLRSSASATTKGQRNYRSMLRRVWQFLLDRFLVSFNGLITVWRLALHWVNSYILYYDYGGKPANDFHHKAVLIGDGLAQGFGSWVSLGNTSGPMRYLNEEVRRNAAVKMEWVFFERGALHSTTQDWMPHESENKGVGTSEAARPEPQGEIRGDHPESEDSSLLQPLPAIKPPRSLLDAVLSSRSGRDACVYIVMVGLQDLLRTKDAGALSALAAGGDGATQTGRILPSTALGTNSETHGMDREPSSARPWCRTVSHLR 259
            MSLRSSASATTKGQRNYRSMLRRVWQFLLDRFLVSFNGLITVWRLALHWVNSYILYYDYGGKPANDFHHKAVLIGDGLAQGFGSWVSLGNTSGPMRYLNEEVRRNAAVKMEWVFFERGALHSTTQDWMPHESENKGVGTSEAARPEPQGEIRGDHPESEDSSLLQPLPAIKPPRSLLDAVLSSRSGRDACVYIVMVGLQDLLRTKDAGALSALAAGGDGATQTGR+LPSTALGTNSET+GMDREPSSARPWCRTVSHLR
Sbjct:    6 MSLRSSASATTKGQRNYRSMLRRVWQFLLDRFLVSFNGLITVWRLALHWVNSYILYYDYGGKPANDFHHKAVLIGDGLAQGFGSWVSLGNTSGPMRYLNEEVRRNAAVKMEWVFFERGALHSTTQDWMPHESENKGVGTSEAARPEPQGEIRGDHPESEDSSLLQPLPAIKPPRSLLDAVLSSRSGRDACVYIVMVGLQDLLRTKDAGALSALAAGGDGATQTGRMLPSTALGTNSETYGMDREPSSARPWCRTVSHLR 264          
BLAST of EWM21783.1 vs. NCBI_GenBank
Match: gi|299470764|emb|CBN79810.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 131.339 bits (329), Expect = 2.251e-31
Identity = 98/363 (27.00%), Postives = 152/363 (41.87%), Query Frame = 0
Query:   20 MLRRVWQFLLDRFLVSFNGLITVWRLALHWV--NSYILYYDYGGKPANDFHHKAVLIGDGLAQGFGSWVSLGNTSGPMRYLNEEVRRNAAVKMEWVFFERGALHSTTQDWMPHESENKGVGTSEAARPEPQGEIRGDHPESEDSSLLQPLPAIKPPRSLLDAVLSSRSGRDACVYIVMVGLQDLLRTKDAGALSALAAGGDGATQTGRILPSTALGTNSETHGMDREPSSARPWCRTVSHLRAILLHLLAQPHSPHVCLCTLPTVGVPSSLRARAIKGVNAQIASMVRSLPPVPSPASHPQAPRPPVTLVDLSQRRVSRPEGRALDGVHFNSTGYKSMATAVLEELAPVMVRHEWAILQGFLS 380
            M  R +  L    LV+    +TV      W+  N +++  D+  +P  DF HK VLIGDG A+G G WV +G T+G  R L +E   +  V+  W    RG   S + DW+P +                                         P+SL    + S + RDA +++V +G  D++       +SA+                TAL T  E              C TV +LR I   L A+     V +C + T G   + R    K +N Q+A   ++     +          PV +V ++  R +R +GRA DG+H N+ GY++ A+AV E + P+MV  EW + +  L+
Sbjct:    1 MATREFWLLTSYLLVALRRALTV-----TWIRINKFLMKPDWVIRPVADFRHKVVLIGDGFAEGVGDWVVMGGTAGVTRMLEKEAGSDEKVRTCWHIINRGRAGSLSSDWLPSD-----------------------------------------PKSLYHRKVQSEACRDAEIFVVALGTMDVVNDCVGMPVSAM--------------RKTALDTFEEGE-----------ICDTVKNLREICDALRAE--GKKVVVCNVMTSGAGINRRTGTAKRINRQLALYGKATATATAKGETAPKGGQPVEVVKMNNPRAAREDGRAFDGLHLNARGYRAFASAVYEVVGPMMVAVEWKVWKSKLA 290          
BLAST of EWM21783.1 vs. NCBI_GenBank
Match: gi|673031360|ref|XP_008869641.1| (hypothetical protein H310_06372 [Aphanomyces invadans] >gi|574474792|gb|ETW01793.1| hypothetical protein H310_06372 [Aphanomyces invadans])

HSP 1 Score: 66.6254 bits (161), Expect = 1.032e-8
Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 0
Query:   64 ANDFHHKAVLIGDGLAQGFGSWVSLGNTSGPMRYLNEEVRRNAAVKMEWVFFERGALHSTTQDWMPHES 132
            AN++ HK V+IGDG A GFG W+++  + G  +YL +EV +   ++  W    RG L + +  W P  S
Sbjct:   37 ANEYQHKIVIIGDGFAAGFGDWITMATSGGLSQYLAQEVAKEDKIRHRWQVINRGILDTDSSQWHPTSS 105          
BLAST of EWM21783.1 vs. NCBI_GenBank
Match: gi|698812774|ref|XP_009839416.1| (hypothetical protein, variant 2 [Aphanomyces astaci] >gi|698812780|ref|XP_009839419.1| hypothetical protein, variant 3 [Aphanomyces astaci] >gi|574105649|gb|ETV71172.1| hypothetical protein, variant 2 [Aphanomyces astaci] >gi|574105650|gb|ETV71173.1| hypothetical protein, variant 3 [Aphanomyces astaci])

HSP 1 Score: 63.1586 bits (152), Expect = 4.734e-8
Identity = 22/71 (30.99%), Postives = 41/71 (57.75%), Query Frame = 0
Query:   64 ANDFHHKAVLIGDGLAQGFGSWVSLGNTSGPMRYLNEEVRRNAAVKMEWVFFERGALHSTTQDWMPHESEN 134
            +N+++HK V+IGDG A GFG W+++ ++ G   Y+  E+ +   ++ +W    RG + + +  W P  S  
Sbjct:   33 SNEYYHKIVIIGDGFAAGFGDWITMASSGGLSEYIAHEISKEDKIRHKWQVINRGIVDTDSSQWHPTSSTK 103          
BLAST of EWM21783.1 vs. NCBI_GenBank
Match: gi|698812778|ref|XP_009839418.1| (hypothetical protein, variant 1 [Aphanomyces astaci] >gi|574105648|gb|ETV71171.1| hypothetical protein, variant 1 [Aphanomyces astaci])

HSP 1 Score: 63.1586 bits (152), Expect = 4.811e-8
Identity = 22/69 (31.88%), Postives = 41/69 (59.42%), Query Frame = 0
Query:   64 ANDFHHKAVLIGDGLAQGFGSWVSLGNTSGPMRYLNEEVRRNAAVKMEWVFFERGALHSTTQDWMPHES 132
            +N+++HK V+IGDG A GFG W+++ ++ G   Y+  E+ +   ++ +W    RG + + +  W P  S
Sbjct:   33 SNEYYHKIVIIGDGFAAGFGDWITMASSGGLSEYIAHEISKEDKIRHKWQVINRGIVDTDSSQWHPTSS 101          
BLAST of EWM21783.1 vs. NCBI_GenBank
Match: gi|698812776|ref|XP_009839417.1| (hypothetical protein H257_13559 [Aphanomyces astaci] >gi|574105647|gb|ETV71170.1| hypothetical protein H257_13559 [Aphanomyces astaci])

HSP 1 Score: 63.1586 bits (152), Expect = 1.154e-7
Identity = 22/69 (31.88%), Postives = 41/69 (59.42%), Query Frame = 0
Query:   64 ANDFHHKAVLIGDGLAQGFGSWVSLGNTSGPMRYLNEEVRRNAAVKMEWVFFERGALHSTTQDWMPHES 132
            +N+++HK V+IGDG A GFG W+++ ++ G   Y+  E+ +   ++ +W    RG + + +  W P  S
Sbjct:   33 SNEYYHKIVIIGDGFAAGFGDWITMASSGGLSEYIAHEISKEDKIRHKWQVINRGIVDTDSSQWHPTSS 101          
The following BLAST results are available for this feature:
BLAST of EWM21783.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585102118|gb|EWM21783.1|0.000e+0100.00conserved unknown protein [Nannochloropsis gaditan... [more]
gi|553193089|ref|XP_005855707.1|0.000e+099.23hypothetical protein NGA_2029600, partial [Nannoch... [more]
gi|299470764|emb|CBN79810.1|2.251e-3127.00conserved unknown protein [Ectocarpus siliculosus][more]
gi|673031360|ref|XP_008869641.1|1.032e-837.68hypothetical protein H310_06372 [Aphanomyces invad... [more]
gi|698812774|ref|XP_009839416.1|4.734e-830.99hypothetical protein, variant 2 [Aphanomyces astac... [more]
gi|698812778|ref|XP_009839418.1|4.811e-831.88hypothetical protein, variant 1 [Aphanomyces astac... [more]
gi|698812776|ref|XP_009839417.1|1.154e-731.88hypothetical protein H257_13559 [Aphanomyces astac... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8922rna8922Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications