EWM21789.1, cds8872 (CDS) Nannochloropsis gaditana

Overview
NameEWM21789.1
Unique Namecds8872
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:434869..436089 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21789.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100065g20.7380.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:434869..436089 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM21789.1 vs. NCBI_GenBank
Match: gi|585102125|gb|EWM21789.1| (hypothetical protein Naga_100065g20 [Nannochloropsis gaditana])

HSP 1 Score: 798.89 bits (2062), Expect = 0.000e+0
Identity = 406/406 (100.00%), Postives = 406/406 (100.00%), Query Frame = 0
Query:    1 MRNISLCLAILLVAGCAVATLPHASPGQSPDRIPLLGVCGGRWGRTAPTPPPAPEVVETPSPAQPLSLASPYANLRALAILSAAAGSWAVLRAPNVREWFDDVRPLQPKYFPLARHQVLILLAWLTNKIAVRIPGRSDGKSWKDAMSSPVRFFTPSAYAFAIWAPIFLGEFLLTFYQLASNRLAPALQPYLARLAPPLAQALAAQSLWCVAFRPWVGRMQFVPSALLAMTAVGLSRVHTVLREAVAAGAMRPWDYLIVHLPLSLHFGWITCATLVNLNGWFAVAPTLRTGDKLGLALASINVAVTLGSQVTLASGDPVIALVVAWALYAVAHDLAPSRSLLRKNKLVDDDALDCLEISARVSAFLQAGLAGAVMVWKVLLKAGVVVPGDAKRLMAVAMGPVKTLLG 406
            MRNISLCLAILLVAGCAVATLPHASPGQSPDRIPLLGVCGGRWGRTAPTPPPAPEVVETPSPAQPLSLASPYANLRALAILSAAAGSWAVLRAPNVREWFDDVRPLQPKYFPLARHQVLILLAWLTNKIAVRIPGRSDGKSWKDAMSSPVRFFTPSAYAFAIWAPIFLGEFLLTFYQLASNRLAPALQPYLARLAPPLAQALAAQSLWCVAFRPWVGRMQFVPSALLAMTAVGLSRVHTVLREAVAAGAMRPWDYLIVHLPLSLHFGWITCATLVNLNGWFAVAPTLRTGDKLGLALASINVAVTLGSQVTLASGDPVIALVVAWALYAVAHDLAPSRSLLRKNKLVDDDALDCLEISARVSAFLQAGLAGAVMVWKVLLKAGVVVPGDAKRLMAVAMGPVKTLLG
Sbjct:    1 MRNISLCLAILLVAGCAVATLPHASPGQSPDRIPLLGVCGGRWGRTAPTPPPAPEVVETPSPAQPLSLASPYANLRALAILSAAAGSWAVLRAPNVREWFDDVRPLQPKYFPLARHQVLILLAWLTNKIAVRIPGRSDGKSWKDAMSSPVRFFTPSAYAFAIWAPIFLGEFLLTFYQLASNRLAPALQPYLARLAPPLAQALAAQSLWCVAFRPWVGRMQFVPSALLAMTAVGLSRVHTVLREAVAAGAMRPWDYLIVHLPLSLHFGWITCATLVNLNGWFAVAPTLRTGDKLGLALASINVAVTLGSQVTLASGDPVIALVVAWALYAVAHDLAPSRSLLRKNKLVDDDALDCLEISARVSAFLQAGLAGAVMVWKVLLKAGVVVPGDAKRLMAVAMGPVKTLLG 406          
BLAST of EWM21789.1 vs. NCBI_GenBank
Match: gi|298709047|emb|CBJ30996.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 174.096 bits (440), Expect = 5.805e-48
Identity = 105/222 (47.30%), Postives = 133/222 (59.91%), Query Frame = 0
Query:  117 QVLILLAWLTNKIAVRIPGRSDG---KSWKDAMSSPVRFFTPSAYAFAIWAPIFLGEFLLTFYQLASNRLAPALQPYLARLAPPLAQALAAQSLWCVAFRPWV--GRMQFVPSALLAMTAVGLSRVHTVLREAVAAGAMRPWDYLIVHLPLSLHFGWITCATLVNLNGWFAVAPTLRTGDKLGLALASINVAVTLGSQVTLASGDPVIALVVAWALYAVAHD 333
            QVL L +W  N  AV   GR DG   +  KDA    VR+F P+ +AF+IW PIFLGE  L  YQ        A   +L++L+P L+ A   QS WC++FR W     + + P+ALL  TA  L   H V+R A+AAG M    Y +VHLP+SLHFGW++CATLVN N + ++ P    G KL  +LASI  AV L   VT  +GDPV A VVAWAL AVA +
Sbjct:   51 QVLTLTSWAINTAAVSAGGRLDGPEPEDPKDAKLPLVRYFMPAGWAFSIWGPIFLGEAALAVYQTLPLEGVSAAAGWLSKLSPWLSSAFLVQSCWCLSFREWARDSGLLWFPAALLGGTAACLGGAHHVVRGALAAGEMSNLQYGLVHLPVSLHFGWVSCATLVNFNNYISLLPFSDKG-KLNFSLASIASAVGLAVAVTGTTGDPVYAGVVAWALSAVASE 271          
BLAST of EWM21789.1 vs. NCBI_GenBank
Match: gi|299470129|emb|CBN78158.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 139.043 bits (349), Expect = 1.830e-32
Identity = 93/207 (44.93%), Postives = 121/207 (58.45%), Query Frame = 0
Query:  117 QVLILLAWLTNKIAVRIPGRSDGKSWKDAMSS-PVRFFTPSAYAFAIWAPIFLGEFLLTFYQLASNRLAPALQP--YLARLAPPLAQALAAQSLWCVAFRPWV--GRMQFVPSALLAMTAVGLSRVHTVLREAVAAGAMRPWDYLIVHLPLSLHFGWITCATLVNLNGWFAVAPTLRTGDKLGLALASINVAVTLGSQVTLASGDPV 318
            QVL   AW  N  A    GR DG     +  + PVRF +P+ +AFAIW PIF GE +   +QL      P+++   +L+ ++P  A A+  Q+LWC +FRPW     + ++P+ LL  T V L  VH +LREA     M    YL VH+PLSLH GWI+CATLVNLNG+FA    L    KLGLAL S+  AV LG  +TL   DP+
Sbjct:  311 QVLAASAWALNMRATFGGGRLDGIGQSGSSGTRPVRFLSPAGWAFAIWGPIFFGEAIYVAFQLMP---LPSIRGSWWLSDISPWFAGAMLFQALWCFSFRPWARDSGLLWLPALLLGGTGVALGGVHRILREAWFTSDMTVLQYLAVHVPLSLHLGWISCATLVNLNGYFATINKLSNRVKLGLALGSVVAAVALGVAITLLREDPI 514          
BLAST of EWM21789.1 vs. NCBI_GenBank
Match: gi|145349756|ref|XP_001419294.1| (predicted protein [Ostreococcus lucimarinus CCE9901] >gi|144579525|gb|ABO97587.1| predicted protein [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 126.331 bits (316), Expect = 4.126e-30
Identity = 99/224 (44.20%), Postives = 121/224 (54.02%), Query Frame = 0
Query:  153 FTPSAYAFAIWAPIFLGEFLLTFYQLASNRLAPALQPYLARLAPPLAQALAAQSLWCVAFRPWVG--RMQFVPSALLAMTAVGLSRVHTVLREAVAAGAMRPWDYLIVHLPLSLHFGWITCATLVNLNGWFAVAPTLRTGDKLGLALASINVAVTLGSQVTLASGDPVIALVVAWALYAVAHDLAPSRSLLRKNKLVDDDALDCLEISARVSAFLQAGLAGAVM 374
            FTP+ +AFAIW  I+ GEF L  + LAS     A +     +AP  A A A Q+LWC AFRPW    R  +V SALL   AV L         A A+ A + W Y   H+PLS+HFGWI+CA LVNLN    VA T     +L  A  S   A  LG+ VTL +GDPV ALV+AWAL AVA D        R  + + D  L  L  +AR  A  +A LA  V+
Sbjct:   36 FTPAGWAFAIWGAIYAGEFALVAHALASASGGGASEAATRAVAPSWALACAFQALWCAAFRPWAKAPRHFWVSSALLVAEAVALGSA-HRALRAAASAASKAW-YWTTHVPLSMHFGWISCAALVNLNS--HVAKTCAPDTQLATAFLSAFGAGGLGAAVTLTTGDPVYALVIAWALTAVASDGGK-----RTTETLADVPLKALTKAARWGA--RAALASVVV 248          
BLAST of EWM21789.1 vs. NCBI_GenBank
Match: gi|551677616|ref|XP_005841561.1| (hypothetical protein GUITHDRAFT_100057 [Guillardia theta CCMP2712] >gi|428185729|gb|EKX54581.1| hypothetical protein GUITHDRAFT_100057 [Guillardia theta CCMP2712])

HSP 1 Score: 114.775 bits (286), Expect = 1.785e-25
Identity = 67/175 (38.29%), Postives = 99/175 (56.57%), Query Frame = 0
Query:  106 LQPKYFPLARHQVLILLAWLTNKIAVRIPGRSDGKSWKDAMSSPVRFFTPSAYAFAIWAPIFLGEFLLTFYQLASNRLAPALQPYLARLAPPLAQALAAQSLWCVAFRPWVGRMQFVPSALLAMTAVGLSRVHTVLREAVA-AGAMRPWDYLIVHLPLSLHFGWITCATLVNLNG 279
            ++   F L   Q++I   +     A  IPGR D    +   +  +RFFTP+ +AFAIWAPIFLGE L+ F  L  + L      +L  +AP  A A  AQ+LWC+AFRPW  + Q++P++LL + A+ L   H  +  + + +GA   W      +P++LHFGWIT A  ++ NG
Sbjct:   22 MKRTIFGLQSWQLMISGGYALFFCANLIPGRLDTVLGRPKRTD-LRFFTPAGFAFAIWAPIFLGEMLMMFSVLMPDSLRSPGSGWLEAMAPSYAAASVAQALWCLAFRPWALKYQWIPASLLTIAALALFESHRHVASSYSMSGAASLWSLFACRIPVALHFGWITAAAALSWNG 195          
BLAST of EWM21789.1 vs. NCBI_GenBank
Match: gi|1210531929|dbj|GAX09357.1| (hypothetical protein FisN_6Lh272 [Fistulifera solaris])

HSP 1 Score: 113.62 bits (283), Expect = 5.196e-25
Identity = 92/260 (35.38%), Postives = 126/260 (48.46%), Query Frame = 0
Query:  113 LARHQVLILLAWLTNKIAVRIPGRSDGKSWKD-------AMSSPVRFFTP-----------------SAYAFAIWAPIFLGEFLLTFYQLASNRLAPALQPYLARLAPPLAQALAAQSLWCVAFRP-WVGRMQFVPSALLAMTAVGLSRVHTVLREAVAAGAMRPWDYLIVHLPLSLHFGWITCATLVNLNGWFAVAPTLRTGDKLGLALASINVAVTLGSQVTLASGDPVIALVVAWALYAVAHDL----APSRSLLRK 343
            LA  Q   + A+  N +AV IPGR DG   ++       A   PV + +P                 S +AFAIW PI+ GE + T  Q         L  YL  ++ P   A   QSLWC +FRP + G   ++  A+L  TA  LS+VH     AVA  A  P  + +  LPLS+HFGW T ATLVNL+G  A++P         +  +S  +A  LG  +TL    PV  L +AWAL A A  +    AP+  +++K
Sbjct:   35 LAFLQGANVAAFCANCLAVSIPGRIDGMQDQEMRPGLLRADDDPVTYESPDYTNVYSPSRGRTMVAPSGWAFAIWGPIYAGEAIFTVAQFFPQS---GLVIYLPSISAPFIAANLFQSLWCASFRPQYQGWASYISVAMLGGTAYSLSQVH-----AVAFTATGPAYWFL--LPLSIHFGWTTAATLVNLSGSVAMSPENSDEAVTAMGHSSAVLATALGVGLTLNHAAPVYGLTLAWALSACADGMKSRDAPAAKIMQK 284          
BLAST of EWM21789.1 vs. NCBI_GenBank
Match: gi|219110939|ref|XP_002177221.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411756|gb|EEC51684.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 112.464 bits (280), Expect = 1.517e-24
Identity = 96/278 (34.53%), Postives = 132/278 (47.48%), Query Frame = 0
Query:  106 LQPKYFPLARHQVLILLAWLTNKIAVRIPGRSDGK--------------------SWKDAMSSPV-----------RFFTPSAYAFAIWAPIFLGEFLLTFYQLASNRLAPALQPYLARLAPPLAQALAAQSLWCVAFRPWVGR--MQFVPSALLAMTAVGLSRVHTVLREAVAAGAMRPWDYLIVHLPLSLHFGWITCATLVNLNGWFAVAPTLRTGDKLGLALASINVAVTLGSQVTLASGDPVIALVVAWALYAVAHDLA--PSRSLLRKNKLVD 348
            LQ   F L   Q+L   A+ TN  AV +PGR DG+                    S KD  S                 +P+ +AFAIW PI+LGE      Q +   + P LQ  L +++ P   A   QSLWC +FRP   +   ++V +A+L  TAV LS+VH  +   +A        Y +   PL++HFGW T ATLVNLNG  A++    T   +    AS   A  LG  VTL  G PV  L +AWAL A A+ +    +++ L+K  +V 
Sbjct:   26 LQAVGFSLGSLQLLNAAAFATNVAAVSVPGRIDGQQDAEMRKEVLNPAEPGSGNTSSKDNESCSTFSDVYSASRGRTLVSPAGWAFAIWGPIYLGEAAFCLGQFS---VQP-LQTVLPQISAPFIAANLCQSLWCASFRPSYNKGWAKYVSAAMLGGTAVALSQVHAAVPPGLAG-------YFV---PLTMHFGWATAATLVNLNGCVAMSDVSDT-FVIATGHASALAATALGVGVTLTQGSPVYGLTIAWALAACANGMKQRETKTPLQKGMMVQ 288          
BLAST of EWM21789.1 vs. NCBI_GenBank
Match: gi|1210519027|dbj|GAX22025.1| (hypothetical protein FisN_6Hh272 [Fistulifera solaris])

HSP 1 Score: 111.694 bits (278), Expect = 2.429e-24
Identity = 88/242 (36.36%), Postives = 120/242 (49.59%), Query Frame = 0
Query:  129 IAVRIPGRSDGKSWKD-------------------AMSSPVRFFT---PSAYAFAIWAPIFLGEFLLTFYQLASNRLAPALQPYLARLAPPLAQALAAQSLWCVAFRP-WVGRMQFVPSALLAMTAVGLSRVHTVLREAVAAGAMRPWDYLIVHLPLSLHFGWITCATLVNLNGWFAVAPTLRTGDKLGLALASINVAVTLGSQVTLASGDPVIALVVAWALYAVAHDL----APSRSLLRK 343
            +AV IPGR DG   ++                    + SP R  T   PS +AFAIW PI+ GE + T  Q         L  YL  ++ P   A   QSLWC +FRP + G   ++  A+L  TA  LS+VH     AVA  A  P  + +  LPLS+HFGW T ATLVNL+G  A++P         +  +S  +A  LG  +TL+   PV  L +AWAL A A  +    AP+  +++K
Sbjct:   52 LAVSIPGRIDGTQDQEMRPGLLRADDDPYEPPDYTNVYSPSRGRTLVAPSGWAFAIWGPIYAGEAIFTVAQFFPQS---GLALYLPAISAPFIAANLFQSLWCASFRPQYQGWASYISVAMLGGTAYSLSQVH-----AVACTATGPAYWFL--LPLSIHFGWTTAATLVNLSGSVAMSPENSDEFVTAIGHSSAVLATALGVGLTLSHAAPVYGLTLAWALSACADGMKTRDAPAAKVMQK 283          
BLAST of EWM21789.1 vs. NCBI_GenBank
Match: gi|1199291759|gb|OUS46849.1| (hypothetical protein BE221DRAFT_145303 [Ostreococcus tauri])

HSP 1 Score: 113.235 bits (282), Expect = 2.759e-23
Identity = 108/292 (36.99%), Postives = 141/292 (48.29%), Query Frame = 0
Query:   94 PNVREWFDDVRPLQPKYFPLARH-QVLILLAWLTNKIAVRIPGRSDGKSWKDA----------------MSSPVR-FFTPSAYAFAIWAPIFLGEFLLTFYQLASNRLAPALQPYLARLAPPLAQALAAQSLWCVAFRPWVG--RMQFVPSALLAMTAVGLSRVHTVLREAVAAGAMRPWDYLI--VHLPLSLHFGWITCATLVNLNGWFAVAPTLRTGDKLGLALASINVAVTLGSQVTLASGDPVIALVVAWALYAVAHDLAPSRSLLRKNKLVDDDALDCLEISARVSA 363
            P+++  F ++  L  K    A+  +V++ LA+  N  +V  PGR DG+  K A                + S  R  FTP+ +AFAIW  I+ GE  +T + L            +A  AP  A A   QSLWCVAFRPW    R  +V SALL   A  L      LR    AG++ P + L     +PLSLHFGWI+CA LVN+N    VA T     ++  A  S   A  LG+ V++ SGD V   VVAWAL AVA D        R  + V D  LD L  +A   A
Sbjct:  319 PSLKSIFAEITSLTAKAIAGAQPWKVVVALAYGVNVASVSAPGRIDGEMQKRAAEAKRAKPEEKAHGVPLDSEFRSLFTPAGWAFAIWGVIYAGEMAMTAHALLGG------DERVAAAAPYWAVACGLQSLWCVAFRPWAKKPRHFWVSSALLITEAFALGGATRALR---GAGSISPSEALFWTTRVPLSLHFGWISCAALVNVNS--HVAKTCAIDTQIAFAFLSAFGASALGAGVSVFSGDAVYGAVVAWALAAVASDGGK-----RTTETVRDHTLDALRTAASWGA 594          
BLAST of EWM21789.1 vs. NCBI_GenBank
Match: gi|223994977|ref|XP_002287172.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976288|gb|EED94615.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 109.383 bits (272), Expect = 2.972e-23
Identity = 87/259 (33.59%), Postives = 116/259 (44.79%), Query Frame = 0
Query:  113 LARHQVLILLAWLTNKIAVRIPGRSDGKSWKD----------------------------------AMSSPVRFFTPSAYAFAIWAPIFLGEF-LLTFYQLASNRLAPALQPYLARLAPPLAQALAAQSLWCVAFRPWVGR--MQFVPSALLAMTAVGLSRVHTVLREAVAAGAMRPWDYLIVHLPLSLHFGWITCATLVNLNGWFAVAPTLRTGDKLGLALASINVAVTLGSQVTLASGDPVIALVVAWALYAVAHDL 334
            LA  + L L A+ +N +AV +PGR DG+   +                                  +++       PS +AFAIW PI+LGE   +T   LAS+    AL   L  +  P   A   QS WC +FRP  G    ++V  A+L  TA  LS VH+    A+ A       YL+  LPL++HFGW + ATLVNLNG  A            L  +S   A  LG  VT+A   P   L +AWAL A A  +
Sbjct:   36 LAILKGLNLAAFASNAVAVSVPGRLDGQQDSEMREGNLNPSKPNTRNTKEDSPLVRGGKEESTSAYSLNRSRTLINPSGWAFAIWGPIYLGEAAFVTSQMLASDTTLTALSALLPHITAPFVAANILQSFWCASFRPSYGEGWKRYVSVAMLGGTAYSLSLVHSAGCAALVADQTLQ-SYLL--LPLTMHFGWTSAATLVNLNGSLASDVNASPRSLTALGHSSALAATLLGVGVTIAHASPAYGLTLAWALAACADGM 291          
The following BLAST results are available for this feature:
BLAST of EWM21789.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Position :
0
Zoom :
x 1
01SequenceEWM21789.1CBJ30996.1CBN78158.1XP_001419294.1XP_005841561.1GAX09357.1XP_002177221.1GAX22025.1OUS46849.1XP_002287172.1
Match NameE-valueIdentityDescription
gi|585102125|gb|EWM21789.1|0.000e+0100.00hypothetical protein Naga_100065g20 [Nannochlorops... [more]
gi|298709047|emb|CBJ30996.1|5.805e-4847.30conserved unknown protein [Ectocarpus siliculosus][more]
gi|299470129|emb|CBN78158.1|1.830e-3244.93conserved unknown protein [Ectocarpus siliculosus][more]
gi|145349756|ref|XP_001419294.1|4.126e-3044.20predicted protein [Ostreococcus lucimarinus CCE990... [more]
gi|551677616|ref|XP_005841561.1|1.785e-2538.29hypothetical protein GUITHDRAFT_100057 [Guillardia... [more]
gi|1210531929|dbj|GAX09357.1|5.196e-2535.38hypothetical protein FisN_6Lh272 [Fistulifera sola... [more]
gi|219110939|ref|XP_002177221.1|1.517e-2434.53predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210519027|dbj|GAX22025.1|2.429e-2436.36hypothetical protein FisN_6Hh272 [Fistulifera sola... [more]
gi|1199291759|gb|OUS46849.1|2.759e-2336.99hypothetical protein BE221DRAFT_145303 [Ostreococc... [more]
gi|223994977|ref|XP_002287172.1|2.972e-2333.59predicted protein [Thalassiosira pseudonana CCMP13... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8902rna8902Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications