EWM21859.1, cds8802 (CDS) Nannochloropsis gaditana

Overview
NameEWM21859.1
Unique Namecds8802
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:268432..269301 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21859.1
Productstress-inducible protein
Orig transcript idgnl|cribi|Naga_100169g2.550.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:268432..269301 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013026TPR-contain_dom
IPR011990TPR-like_helical_dom
IPR019734TPR_repeat
Homology
BLAST of EWM21859.1 vs. NCBI_GenBank
Match: gi|585102202|gb|EWM21859.1| (stress-inducible protein [Nannochloropsis gaditana])

HSP 1 Score: 587.415 bits (1513), Expect = 0.000e+0
Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 0
Query:    1 MAKERKEGIVGLAQASSSQTPICFGFHKKRNTPSKPPGAISCVFTAEEEEEESSIDNTTVGKLRLQALTMNEANPTDRPASGQMLSMHEKRQADVNALREAGNNSAAAGNMRTALNIFEQALGLAPTDAVLYELKSQCHLSLEEYLEAVKAARKAVELAPHWNEGALTLGRALMSLGEVRSAVEVLSRLLGKDGGNEEVREELIYANEALMELQRREADFDLQLHGRAGLDKRELEVARAKKHMLSRGANVSSDCWLGGSEGSEGENGDRGERAGGMGGGTEEMPRSNW 289
            MAKERKEGIVGLAQASSSQTPICFGFHKKRNTPSKPPGAISCVFTAEEEEEESSIDNTTVGKLRLQALTMNEANPTDRPASGQMLSMHEKRQADVNALREAGNNSAAAGNMRTALNIFEQALGLAPTDAVLYELKSQCHLSLEEYLEAVKAARKAVELAPHWNEGALTLGRALMSLGEVRSAVEVLSRLLGKDGGNEEVREELIYANEALMELQRREADFDLQLHGRAGLDKRELEVARAKKHMLSRGANVSSDCWLGGSEGSEGENGDRGERAGGMGGGTEEMPRSNW
Sbjct:    1 MAKERKEGIVGLAQASSSQTPICFGFHKKRNTPSKPPGAISCVFTAEEEEEESSIDNTTVGKLRLQALTMNEANPTDRPASGQMLSMHEKRQADVNALREAGNNSAAAGNMRTALNIFEQALGLAPTDAVLYELKSQCHLSLEEYLEAVKAARKAVELAPHWNEGALTLGRALMSLGEVRSAVEVLSRLLGKDGGNEEVREELIYANEALMELQRREADFDLQLHGRAGLDKRELEVARAKKHMLSRGANVSSDCWLGGSEGSEGENGDRGERAGGMGGGTEEMPRSNW 289          
BLAST of EWM21859.1 vs. NCBI_GenBank
Match: gi|553192848|ref|XP_005855659.1| (stress-inducible protein [Nannochloropsis gaditana CCMP526] >gi|422293407|gb|EKU20707.1| stress-inducible protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 436.032 bits (1120), Expect = 2.949e-153
Identity = 217/220 (98.64%), Postives = 217/220 (98.64%), Query Frame = 0
Query:   70 MNEANPTDRPASGQMLSMHEKRQADVNALREAGNNSAAAGNMRTALNIFEQALGLAPTDAVLYELKSQCHLSLEEYLEAVKAARKAVELAPHWNEGALTLGRALMSLGEVRSAVEVLSRLLGKDGGNEEVREELIYANEALMELQRREADFDLQLHGRAGLDKRELEVARAKKHMLSRGANVSSDCWLGGSEGSEGENGDRGERAGGMGGGTEEMPRSNW 289
            MNEANPTDRPASGQMLS HEKRQADVNALREAGNNSAAAGNMRTALNIFEQALGLAPTDAVLYELKSQCHLSLEEYLEAVKAARKAVELAPHWNE ALTLGRALMSLGEVRSAVEVLSRLLGKDGGNEEVREELIYANEALMELQRREADFDLQLHGRAGLDKRELEVARAKKHMLSRGANVSSDCWLGGSEGSEGENGDRGERAGGMGGGTEEMP SNW
Sbjct:    1 MNEANPTDRPASGQMLSTHEKRQADVNALREAGNNSAAAGNMRTALNIFEQALGLAPTDAVLYELKSQCHLSLEEYLEAVKAARKAVELAPHWNEAALTLGRALMSLGEVRSAVEVLSRLLGKDGGNEEVREELIYANEALMELQRREADFDLQLHGRAGLDKRELEVARAKKHMLSRGANVSSDCWLGGSEGSEGENGDRGERAGGMGGGTEEMPGSNW 220          
BLAST of EWM21859.1 vs. NCBI_GenBank
Match: gi|570324439|gb|ETO72387.1| (hypothetical protein F444_11504 [Phytophthora parasitica P1976] >gi|970631969|gb|KUF78399.1| Tetratricopeptide repeat protein 33 [Phytophthora nicotianae])

HSP 1 Score: 86.6557 bits (213), Expect = 1.177e-16
Identity = 65/195 (33.33%), Postives = 102/195 (52.31%), Query Frame = 0
Query:   65 LQALTMNEANPTDRPASGQMLSMHEKRQADVNALREAGNNSAAAGNMRTALNIFEQALGLAPTDAVLYELKSQCHLSLEEYLEAVKAARKAVELAPHWNEGALTLGRALMSLGEVRSAVEVLSRLLGKDGGNE--------EVREELIYANEALMELQRREADFDLQLHGRAGLDKRELEVARAKKHMLSRGANV 251
            +++L   ++N   R    Q+  + E  QA V  L+E GN  A AG  R A   +++AL + P +A LYEL +Q  +++ E  +AV+ ARKA ELAP W++G LTL R  ++ GE+  A E L + +  +GG E        +  EEL+   E ++  +  EA  +++       DK  LEV    KH+  R   +
Sbjct:   34 IESLQQEKSNGPSRRVKSQV-GLLEDVQAKVKRLKEEGNTLAEAGKFRAATGRWKEALAVDPDNAALYELLAQASMAVCEDFQAVQFARKATELAPTWSDGFLTLARCQLNFGELLLAREALEQAVEHNGGVETEEMASDCQDIEELLMKQEQVLRKRDEEAAHEVE------ADK--LEVISCFKHLSFRAKAI 219          
BLAST of EWM21859.1 vs. NCBI_GenBank
Match: gi|567986866|gb|ETL37182.1| (hypothetical protein L916_11027 [Phytophthora parasitica])

HSP 1 Score: 86.6557 bits (213), Expect = 1.358e-16
Identity = 65/195 (33.33%), Postives = 102/195 (52.31%), Query Frame = 0
Query:   65 LQALTMNEANPTDRPASGQMLSMHEKRQADVNALREAGNNSAAAGNMRTALNIFEQALGLAPTDAVLYELKSQCHLSLEEYLEAVKAARKAVELAPHWNEGALTLGRALMSLGEVRSAVEVLSRLLGKDGGNE--------EVREELIYANEALMELQRREADFDLQLHGRAGLDKRELEVARAKKHMLSRGANV 251
            +++L   ++N   R    Q+  + E  QA V  L+E GN  A AG  R A   +++AL + P +A LYEL +Q  +++ E  +AV+ ARKA ELAP W++G LTL R  ++ GE+  A E L + +  +GG E        +  EEL+   E ++  +  EA  +++       DK  LEV    KH+  R   +
Sbjct:   34 IESLQQEKSNGPSRRVKSQV-GLLEDVQAKVKRLKEEGNTLAEAGKFRAATGRWKEALAVDPDNAALYELLAQASMAVCEDFQAVQFARKATELAPTWSDGFLTLARCQLNFGELLLAREALEQAVEHNGGVETEEMASDCQDIEELLMKQEQVLRKRDEEAAHEVE------ADK--LEVISCFKHLSFRAKAI 219          
BLAST of EWM21859.1 vs. NCBI_GenBank
Match: gi|570948268|gb|ETP13525.1| (hypothetical protein F441_11357 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 85.5001 bits (210), Expect = 3.199e-16
Identity = 65/195 (33.33%), Postives = 101/195 (51.79%), Query Frame = 0
Query:   65 LQALTMNEANPTDRPASGQMLSMHEKRQADVNALREAGNNSAAAGNMRTALNIFEQALGLAPTDAVLYELKSQCHLSLEEYLEAVKAARKAVELAPHWNEGALTLGRALMSLGEVRSAVEVLSRLLGKDGGNE--------EVREELIYANEALMELQRREADFDLQLHGRAGLDKRELEVARAKKHMLSRGANV 251
            +++L   + N   R    Q+  + E  QA V  L+E GN  A AG  R A   +++AL + P +A LYEL +Q  +++ E  +AV+ ARKA ELAP W++G LTL R  ++ GE+  A E L + +  +GG E        +  EEL+   E ++  +  EA  +++       DK  LEV    KH+  R   +
Sbjct:   34 IESLQQKKNNGPSRRVKSQV-GLLEDVQAKVKRLKEEGNTLAEAGKFRAATGRWKEALAVDPDNAALYELLAQASMAVCEDFQAVQFARKATELAPTWSDGFLTLARCQLNFGELLLAREALEQAVEHNGGVETEEMASDCQDIEELLMKQEQVLRKRDEEAAHEVE------ADK--LEVISCFKHLSFRAKAI 219          
BLAST of EWM21859.1 vs. NCBI_GenBank
Match: gi|675197189|ref|XP_008907479.1| (hypothetical protein PPTG_13506 [Phytophthora parasitica INRA-310] >gi|566020795|gb|ETI43706.1| hypothetical protein F443_11439 [Phytophthora parasitica P1569] >gi|568092294|gb|ETN07103.1| hypothetical protein PPTG_13506 [Phytophthora parasitica INRA-310] >gi|570981109|gb|ETP41595.1| hypothetical protein F442_11328 [Phytophthora parasitica P10297])

HSP 1 Score: 85.5001 bits (210), Expect = 3.507e-16
Identity = 65/195 (33.33%), Postives = 101/195 (51.79%), Query Frame = 0
Query:   65 LQALTMNEANPTDRPASGQMLSMHEKRQADVNALREAGNNSAAAGNMRTALNIFEQALGLAPTDAVLYELKSQCHLSLEEYLEAVKAARKAVELAPHWNEGALTLGRALMSLGEVRSAVEVLSRLLGKDGGNE--------EVREELIYANEALMELQRREADFDLQLHGRAGLDKRELEVARAKKHMLSRGANV 251
            +++L   + N   R    Q+  + E  QA V  L+E GN  A AG  R A   +++AL + P +A LYEL +Q  +++ E  +AV+ ARKA ELAP W++G LTL R  ++ GE+  A E L + +  +GG E        +  EEL+   E ++  +  EA  +++       DK  LEV    KH+  R   +
Sbjct:   34 IESLQQEKNNGPSRRVKSQV-GLLEDVQAKVKRLKEEGNTLAEAGKFRAATGRWKEALAVDPDNAALYELLAQASMAVCEDFQAVQFARKATELAPTWSDGFLTLARCQLNFGELLLAREALEQAVEHNGGVETEEMASDCQDIEELLMKQEQVLRKRDEEAAHEVE------ADK--LEVISCFKHLSFRAKAI 219          
BLAST of EWM21859.1 vs. NCBI_GenBank
Match: gi|567958172|gb|ETK83765.1| (hypothetical protein L915_11131 [Phytophthora parasitica])

HSP 1 Score: 85.5001 bits (210), Expect = 3.652e-16
Identity = 65/195 (33.33%), Postives = 101/195 (51.79%), Query Frame = 0
Query:   65 LQALTMNEANPTDRPASGQMLSMHEKRQADVNALREAGNNSAAAGNMRTALNIFEQALGLAPTDAVLYELKSQCHLSLEEYLEAVKAARKAVELAPHWNEGALTLGRALMSLGEVRSAVEVLSRLLGKDGGNE--------EVREELIYANEALMELQRREADFDLQLHGRAGLDKRELEVARAKKHMLSRGANV 251
            +++L   + N   R    Q+  + E  QA V  L+E GN  A AG  R A   +++AL + P +A LYEL +Q  +++ E  +AV+ ARKA ELAP W++G LTL R  ++ GE+  A E L + +  +GG E        +  EEL+   E ++  +  EA  +++       DK  LEV    KH+  R   +
Sbjct:   34 IESLQQKKNNGPSRRVKSQV-GLLEDVQAKVKRLKEEGNTLAEAGKFRAATGRWKEALAVDPDNAALYELLAQASMAVCEDFQAVQFARKATELAPTWSDGFLTLARCQLNFGELLLAREALEQAVEHNGGVETEEMASDCQDIEELLMKQEQVLRKRDEEAAHEVE------ADK--LEVISCFKHLSFRAKAI 219          
BLAST of EWM21859.1 vs. NCBI_GenBank
Match: gi|568016154|gb|ETL90331.1| (hypothetical protein L917_10936 [Phytophthora parasitica])

HSP 1 Score: 85.1149 bits (209), Expect = 4.858e-16
Identity = 65/195 (33.33%), Postives = 101/195 (51.79%), Query Frame = 0
Query:   65 LQALTMNEANPTDRPASGQMLSMHEKRQADVNALREAGNNSAAAGNMRTALNIFEQALGLAPTDAVLYELKSQCHLSLEEYLEAVKAARKAVELAPHWNEGALTLGRALMSLGEVRSAVEVLSRLLGKDGGNE--------EVREELIYANEALMELQRREADFDLQLHGRAGLDKRELEVARAKKHMLSRGANV 251
            +++L   + N   R    Q+  + E  QA V  L+E GN  A AG  R A   +++AL + P +A LYEL +Q  +++ E  +AV+ ARKA ELAP W++G LTL R  ++ GE+  A E L + +  +GG E        +  EEL+   E ++  +  EA  +++       DK  LEV    KH+  R   +
Sbjct:   34 IESLQQEKNNGPSRRVKSQV-GLLEDVQAKVKRLKEEGNTLAEAGKFRAATGRWKEALAVDPDNAALYELLAQASMAVCEDFQAVQFARKATELAPTWSDGFLTLARCQLNFGELLLAREALEQAVEHNGGVETEEMASDCQDIEELLMKQEQVLRKRDEEAAHEVE------ADK--LEVISCFKHLSFRAKAI 219          
BLAST of EWM21859.1 vs. NCBI_GenBank
Match: gi|1026003978|ref|XP_016553828.1| (PREDICTED: tetratricopeptide repeat protein 33 isoform X1 [Capsicum annuum])

HSP 1 Score: 83.5741 bits (205), Expect = 9.009e-16
Identity = 52/123 (42.28%), Postives = 70/123 (56.91%), Query Frame = 0
Query:   95 VNALREAGNNSAAAGNMRTALNIFEQALGLAPTDAVLYELKSQCHLSLEEYLEAVKAARKAVELAPHWNEGALTLGRALMSLGEVRSAVEVLSRLLGKDGGNEEVREELIYANEALMELQRRE 217
            V + +E GN  A  G  R AL  +E AL L P  A+L+E K+Q  L L E  +A+KAA +A EL P W+E  +TLGRA ++ GE  SA+E L R L     + E R +      AL  +QRR+
Sbjct:   48 VESFQEQGNKLAEEGKYREALGKWESALLLMPDRAILHEQKAQILLELGETWKALKAATRATELEPSWDEAWVTLGRAQLNYGEPDSAIESLDRALAIKPDSTEARND---RQAALHHIQRRK 167          
BLAST of EWM21859.1 vs. NCBI_GenBank
Match: gi|568046539|gb|ETM43644.1| (hypothetical protein L914_10960 [Phytophthora parasitica])

HSP 1 Score: 83.9593 bits (206), Expect = 1.238e-15
Identity = 64/195 (32.82%), Postives = 101/195 (51.79%), Query Frame = 0
Query:   65 LQALTMNEANPTDRPASGQMLSMHEKRQADVNALREAGNNSAAAGNMRTALNIFEQALGLAPTDAVLYELKSQCHLSLEEYLEAVKAARKAVELAPHWNEGALTLGRALMSLGEVRSAVEVLSRLLGKDGGNE--------EVREELIYANEALMELQRREADFDLQLHGRAGLDKRELEVARAKKHMLSRGANV 251
            +++L   + N   R    Q+  + E  QA V  L+E GN  A AG  R A   +++AL + P +A LYEL +Q  +++ E  +AV+ ARK+ ELAP W++G LTL R  ++ GE+  A E L + +  +GG E        +  EEL+   E ++  +  EA  +++       DK  LEV    KH+  R   +
Sbjct:   34 IESLQQEKNNGPSRRVKSQV-GLLEDVQAKVKRLKEEGNTLAEAGKFRAATGRWKEALAVDPDNAALYELLAQASMAVCEDFQAVQFARKSTELAPTWSDGFLTLARCQLNFGELLLAREALEQAVEHNGGVETEEMASDCQDIEELLMKQEQVLRKRDEEAAHEVE------ADK--LEVISCFKHLSFRAKAI 219          
The following BLAST results are available for this feature:
BLAST of EWM21859.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102202|gb|EWM21859.1|0.000e+0100.00stress-inducible protein [Nannochloropsis gaditana... [more]
gi|553192848|ref|XP_005855659.1|2.949e-15398.64stress-inducible protein [Nannochloropsis gaditana... [more]
gi|570324439|gb|ETO72387.1|1.177e-1633.33hypothetical protein F444_11504 [Phytophthora para... [more]
gi|567986866|gb|ETL37182.1|1.358e-1633.33hypothetical protein L916_11027 [Phytophthora para... [more]
gi|570948268|gb|ETP13525.1|3.199e-1633.33hypothetical protein F441_11357 [Phytophthora para... [more]
gi|675197189|ref|XP_008907479.1|3.507e-1633.33hypothetical protein PPTG_13506 [Phytophthora para... [more]
gi|567958172|gb|ETK83765.1|3.652e-1633.33hypothetical protein L915_11131 [Phytophthora para... [more]
gi|568016154|gb|ETL90331.1|4.858e-1633.33hypothetical protein L917_10936 [Phytophthora para... [more]
gi|1026003978|ref|XP_016553828.1|9.009e-1642.28PREDICTED: tetratricopeptide repeat protein 33 iso... [more]
gi|568046539|gb|ETM43644.1|1.238e-1532.82hypothetical protein L914_10960 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8832rna8832Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications