EWM21881.1, cds8796 (CDS) Nannochloropsis gaditana

Overview
NameEWM21881.1
Unique Namecds8796
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:257473..257890 +
Alignment locationKK037250.1:257984..258079 +
Alignment locationKK037250.1:258283..258434 +
Alignment locationKK037250.1:258635..260026 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21881.1
Productpeptide chain release factor 3
Orig transcript idgnl|cribi|Naga_100159g4.6559.mrna
GenePRF3
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:257473..257890 +
KK037250.1supercontigKK037250.1:257984..258079 +
KK037250.1supercontigKK037250.1:258283..258434 +
KK037250.1supercontigKK037250.1:258635..260026 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0008135translation factor activity, RNA binding
GO:0000166nucleotide binding
GO:0016149translation release factor activity, codon specific
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0006415translational termination
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR009000Transl_B-barrel
IPR009022EFG_III-V
IPR031157G_TR_CS
IPR027417P-loop_NTPase
IPR004548PrfC
IPR005225Small_GTP-bd_dom
IPR000795TF_GTP-bd_dom
Homology
BLAST of EWM21881.1 vs. NCBI_GenBank
Match: gi|585102225|gb|EWM21881.1| (peptide chain release factor 3 [Nannochloropsis gaditana])

HSP 1 Score: 1411.36 bits (3652), Expect = 0.000e+0
Identity = 685/685 (100.00%), Postives = 685/685 (100.00%), Query Frame = 0
Query:    1 MAHVKARDNKHCKGRSQHTIHTIPYIPLVFVRRLREKDTNQATVLSVLLPVSTFFPPSTATAILTRKGRGTRSKVVAKGILMASKRYYAATLLLLALLLCCHVTAFFPISSALDLRHRVSPVCSSEMLEAISPTENLAKEAIQTVVSDKTKSKVLERRTFAIISHPDSGKTTLTEKLLLYGGAINEAGAVRSRASQRKTQSDFMEMEKQRGISISSTVLTFDYSGFQINLLDTPGHADFGEDTYRTLSAADNALMLVDAGKGLEAQTRKLFEVCRLRGLPIYTFVNKMDRPAKGPVELVDEIEREMGLEVVPMVWPIGDGEDFKGVYDREARVVHLFERQGRKEKAAALDALPLSDPGLPKLLGSTLFAQLEEDVELLDALMPSLDVAKVMRGEQTPMFFGSAMSNFGVALFLNKFLAISEPPAPRETTAGSIGPEHPEFTGFVFKLQANLNPKHRDRVAYVRICSGKFEKGMKVSHSRLRGRQVNLAQASMLFGQDRETIEEAYPGDVVGLNNPGLFAIGDSIYTGPKTVRFPGIPSFSPEVFAYIFNPSAGKYKSFKKGIDELLEEGAVQLLYERNDEGKTSPILAAVGPLQLEVVSYRMKEEYGVETRLEPLTFTAARWSEATWEDIDRADAEGLIFGAMKCKDRWGRPVLLFRNDWKINQVVDEAPYLKLIPWAFAPDEER 685
            MAHVKARDNKHCKGRSQHTIHTIPYIPLVFVRRLREKDTNQATVLSVLLPVSTFFPPSTATAILTRKGRGTRSKVVAKGILMASKRYYAATLLLLALLLCCHVTAFFPISSALDLRHRVSPVCSSEMLEAISPTENLAKEAIQTVVSDKTKSKVLERRTFAIISHPDSGKTTLTEKLLLYGGAINEAGAVRSRASQRKTQSDFMEMEKQRGISISSTVLTFDYSGFQINLLDTPGHADFGEDTYRTLSAADNALMLVDAGKGLEAQTRKLFEVCRLRGLPIYTFVNKMDRPAKGPVELVDEIEREMGLEVVPMVWPIGDGEDFKGVYDREARVVHLFERQGRKEKAAALDALPLSDPGLPKLLGSTLFAQLEEDVELLDALMPSLDVAKVMRGEQTPMFFGSAMSNFGVALFLNKFLAISEPPAPRETTAGSIGPEHPEFTGFVFKLQANLNPKHRDRVAYVRICSGKFEKGMKVSHSRLRGRQVNLAQASMLFGQDRETIEEAYPGDVVGLNNPGLFAIGDSIYTGPKTVRFPGIPSFSPEVFAYIFNPSAGKYKSFKKGIDELLEEGAVQLLYERNDEGKTSPILAAVGPLQLEVVSYRMKEEYGVETRLEPLTFTAARWSEATWEDIDRADAEGLIFGAMKCKDRWGRPVLLFRNDWKINQVVDEAPYLKLIPWAFAPDEER
Sbjct:    1 MAHVKARDNKHCKGRSQHTIHTIPYIPLVFVRRLREKDTNQATVLSVLLPVSTFFPPSTATAILTRKGRGTRSKVVAKGILMASKRYYAATLLLLALLLCCHVTAFFPISSALDLRHRVSPVCSSEMLEAISPTENLAKEAIQTVVSDKTKSKVLERRTFAIISHPDSGKTTLTEKLLLYGGAINEAGAVRSRASQRKTQSDFMEMEKQRGISISSTVLTFDYSGFQINLLDTPGHADFGEDTYRTLSAADNALMLVDAGKGLEAQTRKLFEVCRLRGLPIYTFVNKMDRPAKGPVELVDEIEREMGLEVVPMVWPIGDGEDFKGVYDREARVVHLFERQGRKEKAAALDALPLSDPGLPKLLGSTLFAQLEEDVELLDALMPSLDVAKVMRGEQTPMFFGSAMSNFGVALFLNKFLAISEPPAPRETTAGSIGPEHPEFTGFVFKLQANLNPKHRDRVAYVRICSGKFEKGMKVSHSRLRGRQVNLAQASMLFGQDRETIEEAYPGDVVGLNNPGLFAIGDSIYTGPKTVRFPGIPSFSPEVFAYIFNPSAGKYKSFKKGIDELLEEGAVQLLYERNDEGKTSPILAAVGPLQLEVVSYRMKEEYGVETRLEPLTFTAARWSEATWEDIDRADAEGLIFGAMKCKDRWGRPVLLFRNDWKINQVVDEAPYLKLIPWAFAPDEER 685          
BLAST of EWM21881.1 vs. NCBI_GenBank
Match: gi|299470098|emb|CBN78127.1| (PRF3, plastid translation release factor RF3 [Ectocarpus siliculosus])

HSP 1 Score: 730.709 bits (1885), Expect = 0.000e+0
Identity = 345/535 (64.49%), Postives = 427/535 (79.81%), Query Frame = 0
Query:  150 TKSKVLERRTFAIISHPDSGKTTLTEKLLLYGGAINEAGAVRSRASQRKTQSDFMEMEKQRGISISSTVLTFDYSGFQINLLDTPGHADFGEDTYRTLSAADNALMLVDAGKGLEAQTRKLFEVCRLRGLPIYTFVNKMDRPAKGPVELVDEIEREMGLEVVPMVWPIGDGEDFKGVYDREARVVHLFERQGRKEKAAALDALPLSDPGLPKLLGSTLFAQLEEDVELLDALMPSLDVAKVMRGEQTPMFFGSAMSNFGVALFLNKFLAISEPPAPRET-TAGSIGPEHPEFTGFVFKLQANLNPKHRDRVAYVRICSGKFEKGMKVSHSRLRGRQVNLAQASMLFGQDRETIEEAYPGDVVGLNNPGLFAIGDSIYTGPKTVRFPGIPSFSPEVFAYIFNPSAGKYKSFKKGIDELLEEGAVQLLYERNDEGKTSPILAAVGPLQLEVVSYRMKEEYGVETRLEPLT-FTAARWSEATWEDIDRADAEGLIFGAMKCKDRWGRPVLLFRNDWKINQVVDEAPYLKLIPWAFAPD 682
            T  ++  RR FAIISHPD+GKTTLTEKLLLYGGAI EAGAVRSR+ QRK  SD+ME+EKQRGISI+STVL+F+Y G  INLLDTPGH DF EDTYRTL+AADNA+MLVDA KGLE QTRKLFEVC+LR LPI+TFVNK+DRP+  P EL+D+IERE G+++ P++WPIGDGE+FKGV DR+ + VHLFER GR +KA  +  L L DP LP+L+   L  QL EDVE+LD L+  LD+ +V+ GEQ+PMFFGSAM+NFGV LFL +FL I + P+ R    A  I P + EFTGFVFKLQANL+P+HRDR+AYVR+ SG++EKGMKV HSR++G+QV LA A  LF Q+RET+  AYPGDV+G+NNPG FAIGD+I+TG   +RFPGIPSFSPE FAY+ NP+  KYK+++KG+D+LL+EGAVQ+L ER+D+G  +PILAAVG LQ +VV +RMK EYGV+T LEPL+ +  ARW+E  WE ID A   G +FG    +DR+GRPVLLFRN+WK+  V  + P L+LIPW+  PD
Sbjct:   95 TPFEIDRRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSRSDQRKATSDWMELEKQRGISITSTVLSFEYDGNHINLLDTPGHQDFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVCKLRELPIFTFVNKLDRPSLSPFELLDQIEREFGMKMAPVLWPIGDGEEFKGVLDRDTKTVHLFERAGRTKKATDMPELDLHDPKLPELITEELHEQLLEDVEMLDELVEPLDMERVLTGEQSPMFFGSAMTNFGVELFLKRFLTIGQKPSSRRMGNADVILPGYNEFTGFVFKLQANLDPRHRDRLAYVRVVSGRYEKGMKVQHSRMKGKQVTLAHAQQLFAQERETVLAAYPGDVIGINNPGHFAIGDTIFTGSNKIRFPGIPSFSPECFAYMRNPNPSKYKNYRKGLDQLLDEGAVQMLRERSDDGNGNPILAAVGTLQFDVVQHRMKAEYGVDTILEPLSGYNTARWAEGGWESIDEATKAGKLFGVFTAQDRFGRPVLLFRNEWKLANVQGDLPQLELIPWSRPPD 629          
BLAST of EWM21881.1 vs. NCBI_GenBank
Match: gi|504974726|ref|WP_015161828.1| (peptide chain release factor 3 [Chamaesiphon minutus] >gi|428019644|gb|AFY95738.1| peptide chain release factor 3 [Chamaesiphon minutus PCC 6605])

HSP 1 Score: 682.945 bits (1761), Expect = 0.000e+0
Identity = 323/533 (60.60%), Postives = 405/533 (75.98%), Query Frame = 0
Query:  142 IQTVVSDKTKSKVLERRTFAIISHPDSGKTTLTEKLLLYGGAINEAGAVRSRASQRKTQSDFMEMEKQRGISISSTVLTFDYSGFQINLLDTPGHADFGEDTYRTLSAADNALMLVDAGKGLEAQTRKLFEVCRLRGLPIYTFVNKMDRPAKGPVELVDEIEREMGLEVVPMVWPIGDGEDFKGVYDREARVVHLFERQGRKEKAAALDALPLSDPGLPKLLGSTLFAQLEEDVELLDALMPSLDVAKVMRGEQTPMFFGSAMSNFGVALFLNKFLAISEPPAPRETTAGSIGPEHPEFTGFVFKLQANLNPKHRDRVAYVRICSGKFEKGMKVSHSRLRGRQVNLAQASMLFGQDRETIEEAYPGDVVGLNNPGLFAIGDSIYTGPKTVRFPGIPSFSPEVFAYIFNPSAGKYKSFKKGIDELLEEGAVQLLYERNDEGKTSPILAAVGPLQLEVVSYRMKEEYGVETRLEPLTFTAARWSEATWEDIDRADAEGLIFGAMKCKDRWGRPVLLFRNDWKINQVVDEAPYLKL 674
            +QT +  + +  V  RR FAIISHPD+GKTTLTEKLLLYGGAI+EAGAV++R  QRK  SD+MEMEKQRGISI+STVL F Y GFQ+NLLDTPGH DF EDTYRTL+AADNA+ML+DA KGLE QTRKLFEVC+LR LPI+TFVNK+DRP + P+EL+DEIE+E+GL+   + WPIG G+ FKGV+DR  + VHLFER     + A    + L DP L ++L   LF QL  D+ELLD +   LD+  +  G  TP+FFGSAM+NFGV LFL+ FL  +  P  R +  GSI P +PEF+GFVFKLQAN++PKHRDRVA++R+C+GKFEK M VSH+R  G+ V L++   LF QDRE+IEEAYPGDV+GLNNPG+FAIGD+IYTG K + + GIP FSPE+FA++ NP+  K+K F+KG+ EL EEGAVQ++Y   DE K  PILAAVG LQ EVV +RMK EYGVET LEPL ++ ARW    W+ +D+    G +F  +  KD W RPVLLF+N+W +NQ++++ P LKL
Sbjct:    5 LQTQLQTELEIAVEHRRNFAIISHPDAGKTTLTEKLLLYGGAIHEAGAVKARRDQRKATSDWMEMEKQRGISITSTVLQFGYQGFQVNLLDTPGHQDFSEDTYRTLAAADNAVMLIDAAKGLEPQTRKLFEVCKLRELPIFTFVNKLDRPGREPLELLDEIEQELGLQTYAVNWPIGTGDRFKGVFDRHQQKVHLFERTAHGSREATDTVMDLHDPRLKQILDKELFDQLHSDLELLDGVASELDLEAIHAGYMTPVFFGSAMTNFGVELFLHYFLEYALKPGNRNSNVGSIDPSYPEFSGFVFKLQANMDPKHRDRVAFIRVCTGKFEKDMTVSHAR-TGKTVRLSRPQKLFAQDRESIEEAYPGDVIGLNNPGVFAIGDTIYTGMKKLEYEGIPCFSPELFAFLRNPNPSKFKQFQKGVKELQEEGAVQIMYSA-DEAKRDPILAAVGQLQFEVVQFRMKNEYGVETTLEPLGYSVARWVLNGWDALDKV---GRLFNTLVIKDLWNRPVLLFKNEWNVNQLIEDHPSLKL 532          
BLAST of EWM21881.1 vs. NCBI_GenBank
Match: gi|219120157|ref|XP_002180823.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407539|gb|EEC47475.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 678.707 bits (1750), Expect = 0.000e+0
Identity = 348/624 (55.77%), Postives = 442/624 (70.83%), Query Frame = 0
Query:   77 AKGILMASKRYYAATLLLLALLLCCHVTAFFPISSALDLRHR-----VSPVCSSEMLEAISPTENLAKEAIQTV--VSDKTKSKVLE---RRTFAIISHPDSGKTTLTEKLLLYGGAINEAGAVRSRASQRKTQSDFMEMEKQRGISISSTVLTFDYSGFQINLLDTPGHADFGEDTYRTLSAADNALMLVDAGKGLEAQTRKLFEVCRLRGLPIYTFVNKMDRPAKGPVELVDEIEREMGLEVVPMVWPIGDGEDFKGVYDREARVVHLFERQGRKEKAAALDALPLSDPGLPK--LLGSTLFAQLEEDVELLDALMPSLDVAKVMRGEQTPMFFGSAMSNFGVALFLNKFLAISEPPAPR------ETTAGSIGPEHPEFTGFVFKLQANLNPKHRDRVAYVRICSGKFEKGMKVSHSRLR-GRQVNLAQASMLFGQDRETIEEAYPGDVVGLNNPGLFAIGDSIYTGPKTVRFPGIPSFSPEVFAYIFNPSAGKYKSFKKGIDELLEEGAVQLLYERNDEGKTSPILAAVGPLQLEVVSYRMKEEYGVETRLEPLTFTAARWSEATWEDIDRADAEGLIFGAMKCKDRWGRPVLLFRNDWKINQVVDEAPYLKLIPWAFAP 681
            A  +L+A +R  A  LL+L +      TAF  ++     R R      SP+    + ++ + T      + +    VS   ++  +E   RR  AIISHPDSGKTT+TEKLLLYGGA+ +AGAVR +A QR TQSDFMEME++RGISISSTV+ F+Y  F I L+DTPGH DF EDTYR L+AADNALML+DA KGLE QTRKLFEVCR+R LP++TF NKMDRPA  P E++D+IE E GLE  P++WPIGDG+ FKGV DR   VVHL+++  ++   A +  +PL D    K  +    LF +L ED ELL+ L+  LD+ +VM+GEQ+P+FFGSAM+NFGV LFL+KF ++   P  R      E     IGP H EFTGF+FK QANL+PKHRDR+AYVR+ SG++EKGMKVSHSR + G++ NLAQA  LFG DR +IE AYPGDV+G+NNPG FAIGD+++TG   V FPGIPSFSPE FAYI +P+   YKSF+KGID+LL+EGAVQ L +RND+G    +LAAVG LQ EVV  R+K EY VE+ +EPL ++ ARW +  WE +++ADA+G +FG M C+DRWGRPVLLFRNDWK   V +E  YL L PW+  P
Sbjct:    8 ATTMLLARQRRTAVALLVLCIG-SQSATAFSSVAYPSSHRSRGDAFRSSPLSIQGLRQSTTATAISGSSSTEDTPPVSTNYQAPQIEIDRRRNLAIISHPDSGKTTMTEKLLLYGGALQQAGAVRQKAEQRATQSDFMEMEQERGISISSTVMNFEYQDFGIRLMDTPGHQDFSEDTYRALAAADNALMLLDAAKGLEPQTRKLFEVCRMRRLPLFTFCNKMDRPALSPYEIMDQIEDEFGLETHPILWPIGDGDRFKGVLDRTTNVVHLYQKAEKRGGKAGVQEVPLEDTVTLKATIDDEELFHKLLEDAELLEELINPLDMERVMKGEQSPLFFGSAMTNFGVQLFLDKFCSMGTKPMGRMADTKSENEEEMIGPNHEEFTGFIFKTQANLDPKHRDRLAYVRVVSGRYEKGMKVSHSRSKSGKKYNLAQAQALFGSDRSSIEVAYPGDVIGINNPGNFAIGDTLFTGGARVAFPGIPSFSPEKFAYIRSPNPSDYKSFRKGIDQLLDEGAVQALRQRNDDGGGPLMLAAVGQLQFEVVQARLKNEYNVESIMEPLNYSLARWVDGGWEAVEKADADGKLFGIMICQDRWGRPVLLFRNDWKAASVAEEEKYLDLKPWSTPP 630          
BLAST of EWM21881.1 vs. NCBI_GenBank
Match: gi|397605645|gb|EJK59078.1| (hypothetical protein THAOC_20746 [Thalassiosira oceanica])

HSP 1 Score: 673.7 bits (1737), Expect = 0.000e+0
Identity = 332/554 (59.93%), Postives = 408/554 (73.65%), Query Frame = 0
Query:  153 KVLERRTFAIISHPDSGKTTLTEKLLLYGGAINEAGAVRSRASQRKTQSDFMEMEKQRGISISSTVLTFDYSGFQINLLDTPGHADFGEDTYRTLSAADNALMLVDAGKGLEAQTRKLFEVCRLRGLPIYTFVNKMDRPAKGPVELVDEIEREMGLEVVPMVWPIGDGEDFKGVYDREARVVHLFERQGRKEKAAALDALPLSDPGLPK--LLGSTLFAQLEEDVELLDALMPSLDVAKVMRGEQTPMFFGSAMSNFGVALFLNKFLAISEPPAPR------ETTAGS----------------IGPEHPEFTGFVFKLQANLNPKHRDRVAYVRICSGKFEKGMKVSHSRLR-GRQVNLAQASMLFGQDRETIEEAYPGDVVGLNNPGLFAIGDSIYTGPKTVRFPGIPSFSPEVFAYIFNPSAGKYKSFKKGIDELLEEGAVQLLYERNDEGKTSPILAAVGPLQLEVVSYRMKEEYGVETRLEPLTFTAARWSEATWEDIDRADAEGLIFGAMKCKDRWGRPVLLFRNDWKINQVVDEAPYLKLIPWAFAP 681
            ++  RR  AIISHPDSGKTT+TEKLLLYGGA+ +AGAVR +  QR TQSDFMEMEK+RGISIS+TV++FDY    IN+LDTPGH DF EDTYR L+AADNA+ML+DA KGLE QTRKLFEV R+RGLP++TF NKMDRPA  P EL+D+IE E GLE  P +WPIGDG+ FKGV DR   VVHLF+R  RK K A ++ +P+ D    K  +    L+ +L ED ELL+ L+  LD+ +VM G+Q+P+FFGSAM+NFGV LFL+KFL +   PAPR      E   G                 I PEH EFTGFVFK QANL+PKHRDR+AY+R+ SGKFEKGMKV HSR + G++ NLAQA  LFG DRE++E AYPGDV+G+NNPG FAIGD++YTG   V FPGIPSFSPEVFAYI +P+   +KSF+KGID+LL EGAVQ L +RND+G    ILAAVG LQ EVV  R++ EY VE+ LEP+ +  ARW +  W+ +D+ADA+G +F  M  +DRW RPVLLFRN+WK   + +E  YL+L PW+  P
Sbjct:   53 EIERRRNLAIISHPDSGKTTMTEKLLLYGGALQQAGAVRMKGEQRATQSDFMEMEKERGISISATVMSFDYRTMHINILDTPGHQDFSEDTYRALAAADNAVMLLDAAKGLEPQTRKLFEVARMRGLPLFTFANKMDRPALSPYELMDQIEAEFGLETYPCLWPIGDGDRFKGVLDRMDNVVHLFDRGDRKSK-AEVEQVPMGDLETLKARIDDDELYEKLIEDQELLEELISPLDMDRVMEGQQSPLFFGSAMTNFGVQLFLDKFLDMGTKPAPRLARRMEEGPKGKKAKAQESADDDEPNDLILPEHEEFTGFVFKTQANLDPKHRDRLAYIRVVSGKFEKGMKVGHSRSKHGKKYNLAQAQTLFGSDRESVEVAYPGDVIGINNPGAFAIGDTLYTGTDKVAFPGIPSFSPEVFAYIRSPNPSSFKSFRKGIDQLLAEGAVQSLRQRNDDGGGPLILAAVGQLQFEVVQARLRSEYNVESDLEPIGYDLARWVDGGWDAVDKADADGKLFNIMIVQDRWQRPVLLFRNEWKAASLQEEEKYLELKPWSRPP 605          
BLAST of EWM21881.1 vs. NCBI_GenBank
Match: gi|1121281957|ref|WP_073595064.1| (peptide chain release factor 3 [Phormidium ambiguum] >gi|1115272689|gb|OKH36069.1| peptide chain release factor 3 [Phormidium ambiguum IAM M-71])

HSP 1 Score: 671.389 bits (1731), Expect = 0.000e+0
Identity = 321/533 (60.23%), Postives = 409/533 (76.74%), Query Frame = 0
Query:  142 IQTVVSDKTKSKVLERRTFAIISHPDSGKTTLTEKLLLYGGAINEAGAVRSRASQRKTQSDFMEMEKQRGISISSTVLTFDYSGFQINLLDTPGHADFGEDTYRTLSAADNALMLVDAGKGLEAQTRKLFEVCRLRGLPIYTFVNKMDRPAKGPVELVDEIEREMGLEVVPMVWPIGDGEDFKGVYDREARVVHLFERQGRKEKAAALDALPLSDPGLPKLLGSTLFAQLEEDVELLDALMPSLDVAKVMRGEQTPMFFGSAMSNFGVALFLNKFLAISEPPAPRETTAGSIGPEHPEFTGFVFKLQANLNPKHRDRVAYVRICSGKFEKGMKVSHSRLRGRQVNLAQASMLFGQDRETIEEAYPGDVVGLNNPGLFAIGDSIYTGPKTVRFPGIPSFSPEVFAYIFNPSAGKYKSFKKGIDELLEEGAVQLLYERNDEGKTSPILAAVGPLQLEVVSYRMKEEYGVETRLEPLTFTAARWSEATWEDIDRADAEGLIFGAMKCKDRWGRPVLLFRNDWKINQVVDEAPYLKL 674
            + T +  + ++ V +RR FAIISHPD+GKTTLTEKLLLYGGAI+EAGAV++R +QRK  SD+MEME+QRGISI+STVL F Y G QINLLDTPGH DF EDTYRTL+AADNA+ML+DA KGLE QTRKLFEVCR+R LPI+TFVNK+DRP + P+EL+DEIE+E+GL+   + WPIG G+ FKGV+DR+ + +HLFER     + A    + L DP + +LL   L+ QL+ED+E+L  L P LD+  V  G+ TP+FFGSAM+NFGV LFLN FL  +  P  R +T G I P +PEF+GFVFKLQAN++PKHRDRVA+VR+C+GKFEK M V+H+R  G+ V L++   LF QDRE+IEEAYPGDV+GLNNPG+FAIGD+IYTG K + + GIP FSPE+FAY+ NP+  K+K F+KG+ EL EEGAVQ++Y   DE K  PILAAVG LQLEVV +R+  EYGVET L+ L ++ ARW    WE +++    G +F  +  KD WGRPVLLF+N+W ++QV+ + P LKL
Sbjct:    1 MTTELQSELETSVEQRRNFAIISHPDAGKTTLTEKLLLYGGAIHEAGAVKARRAQRKATSDWMEMEQQRGISITSTVLQFAYQGCQINLLDTPGHQDFSEDTYRTLAAADNAVMLIDAAKGLEPQTRKLFEVCRMRSLPIFTFVNKLDRPGREPLELLDEIEKELGLQTYAVNWPIGMGDRFKGVFDRQKQQIHLFERTAHGSREAKDTIVNLGDPRIEELLEKDLYYQLKEDLEVLQELGPDLDLEAVHAGQMTPIFFGSAMTNFGVELFLNNFLHYALKPGSRNSTNGEIPPTYPEFSGFVFKLQANMDPKHRDRVAFVRVCTGKFEKDMVVNHAR-SGKTVRLSRPQKLFAQDRESIEEAYPGDVIGLNNPGVFAIGDTIYTGQK-LEYEGIPCFSPELFAYLRNPNPSKFKQFRKGVSELREEGAVQIMYSA-DEAKRDPILAAVGQLQLEVVQFRLLNEYGVETSLDYLPYSLARWVAGGWEALEKV---GRLFNTITVKDSWGRPVLLFKNEWNLHQVMGDHPSLKL 527          
BLAST of EWM21881.1 vs. NCBI_GenBank
Match: gi|1072230127|gb|OEU14861.1| (peptide chain release factor [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 669.078 bits (1725), Expect = 0.000e+0
Identity = 323/544 (59.38%), Postives = 410/544 (75.37%), Query Frame = 0
Query:  157 RRTFAIISHPDSGKTTLTEKLLLYGGAINEAGAVRSRASQRKTQSDFMEMEKQRGISISSTVLTFDYSGFQINLLDTPGHADFGEDTYRTLSAADNALMLVDAGKGLEAQTRKLFEVCRLRGLPIYTFVNKMDRPAKGPVELVDEIEREMGLEVVPMVWPIGDGEDFKGVYDREARVVHLFERQGRKEKAAALDALPLSDPG-LPKLLGS-TLFAQLEEDVELLDALMPSLDVAKVMRGEQTPMFFGSAMSNFGVALFLNKFLAISEPPAPR-----ETTAGS--------IGPEHPEFTGFVFKLQANLNPKHRDRVAYVRICSGKFEKGMKVSHSRLR-GRQVNLAQASMLFGQDRETIEEAYPGDVVGLNNPGLFAIGDSIYTGPKTVRFPGIPSFSPEVFAYIFNPSAGKYKSFKKGIDELLEEGAVQLLYERNDEGKTSPILAAVGPLQLEVVSYRMKEEYGVETRLEPLTFTAARWSEATWEDIDRADAEGLIFGAMKCKDRWGRPVLLFRNDWKINQVVDEAPYLKLIPWAFAPDEE 684
            RR  AIISHPDSGKTT+TEKLLLYGGA+ +AGAVR +A QR TQSDFMEME++RGISISSTV+ FDY G+++N+LDTPGH DF EDTYR L+AADNA+ML+DA KGLE QTRKLFEVCRLRGLP++TF NKMDRPA  P EL+D+I+ E  LE  P++WPIGDG+ FKGV DR   VVHL+++  ++   A +  +P +D   L +L+    L+ +L ED ELL+ L+  LD+ +V+ GE TP+FFGSAM+NFGV LFL+KFL +   P  R     +TT GS        + P+  EFTGFVFK QANL+PKHRDR+AYVR+ SG +EKGMKV HSR + G++ NLAQA  LFG DR +I+ AYPGDV+G+NNPG+F IGD+++TG   V FPGIPSFSPE F YI +P+   YKSF+KGID+LL+EGA+Q L +RND+G    +LAAVG LQ EVV  R+K EY VE  +EPL +T ARW++  W+ +D+ADA+G +FG M  +DRW RPVLLFRNDWK + + ++   L+L PW+  PD E
Sbjct:   41 RRNLAIISHPDSGKTTMTEKLLLYGGALQQAGAVRQKAEQRSTQSDFMEMERERGISISSTVMNFDYEGYRLNILDTPGHQDFSEDTYRALAAADNAIMLLDAAKGLEPQTRKLFEVCRLRGLPLFTFCNKMDRPALSPYELMDQIQEEFNLESFPVLWPIGDGDRFKGVLDRMEDVVHLYQKPVKRGGKAEVVLIPFNDTAKLRELINDEELYNKLIEDHELLNELIEPLDMDRVLDGELTPLFFGSAMTNFGVQLFLDKFLDMGTKPTSRDAFTKDTTDGSGNDDDTNIVSPQFQEFTGFVFKTQANLDPKHRDRLAYVRVVSGVYEKGMKVGHSRSKAGKKYNLAQAQALFGSDRSSIDVAYPGDVIGINNPGMFGIGDTLFTGADRVAFPGIPSFSPEKFCYIRSPNPSDYKSFRKGIDQLLQEGAIQALRQRNDDGGGPLMLAAVGELQFEVVQARLKNEYKVEALMEPLGYTLARWADGGWDAVDKADADGKLFGIMIVQDRWARPVLLFRNDWKASSLTEDEKDLQLSPWSQPPDFE 584          
BLAST of EWM21881.1 vs. NCBI_GenBank
Match: gi|499931697|ref|WP_011612431.1| (peptide chain release factor 3 [Trichodesmium erythraeum] >gi|123352143|sp|Q110K2.1|RF3_TRIEI RecName: Full=Peptide chain release factor 3; Short=RF-3 >gi|110167532|gb|ABG52072.1| bacterial peptide chain release factor 3 (bRF-3) [Trichodesmium erythraeum IMS101])

HSP 1 Score: 669.078 bits (1725), Expect = 0.000e+0
Identity = 318/529 (60.11%), Postives = 400/529 (75.61%), Query Frame = 0
Query:  146 VSDKTKSKVLERRTFAIISHPDSGKTTLTEKLLLYGGAINEAGAVRSRASQRKTQSDFMEMEKQRGISISSTVLTFDYSGFQINLLDTPGHADFGEDTYRTLSAADNALMLVDAGKGLEAQTRKLFEVCRLRGLPIYTFVNKMDRPAKGPVELVDEIEREMGLEVVPMVWPIGDGEDFKGVYDREARVVHLFERQGRKEKAAALDALPLSDPGLPKLLGSTLFAQLEEDVELLDALMPSLDVAKVMRGEQTPMFFGSAMSNFGVALFLNKFLAISEPPAPRETTAGSIGPEHPEFTGFVFKLQANLNPKHRDRVAYVRICSGKFEKGMKVSHSRLRGRQVNLAQASMLFGQDRETIEEAYPGDVVGLNNPGLFAIGDSIYTGPKTVRFPGIPSFSPEVFAYIFNPSAGKYKSFKKGIDELLEEGAVQLLYERNDEGKTSPILAAVGPLQLEVVSYRMKEEYGVETRLEPLTFTAARWSEATWEDIDRADAEGLIFGAMKCKDRWGRPVLLFRNDWKINQVVDEAPYLKL 674
            +  + ++ V +RR FAIISHPD+GKTTLTEKLLLYGGAI EAGAV+++ +QR   SD+M ME+QRGISI+STVL FDY   QINLLDTPGH DF EDTYRTL+AADNA+ML D+ KGLE QTRKLFEVC++R LPI+TF+NKMDRP + P+EL+DEIE+E+GL+  P+ WPIG G+ FKGV+DR    +HLFER     KAA    + L DP + KLL   L+ QL+ED+ELLD L  +LD+ ++  GE TP+FFGSAM+NFGV LFL+ FL  +  P   ++T G + P +P FTGFVFKLQAN++PKHRDRVA++R+C+GKFEK M VSH+R  G+ V L++   LF QDR +IE AYPGD++GLNNPG+FAIGD+IY G K + + GIP FSPE+FAY+ NP+  K+K F+KG++EL EEGAVQ++Y   DE K  PILAAVG LQLEVV +RM+ EYGVETR+E L FT ARW +  WE + +    G +F  +  KD WGRPVLLF+N W   QV  E P LKL
Sbjct:    5 IEAELQTAVDKRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVKAKRAQRHATSDWMAMEQQRGISITSTVLQFDYQNCQINLLDTPGHQDFSEDTYRTLAAADNAVMLEDSAKGLEPQTRKLFEVCKMRKLPIFTFINKMDRPGREPLELLDEIEQELGLKTYPVNWPIGMGDRFKGVFDRRKEQIHLFERSIHGRKAAVNTVVNLGDPQIEKLLDQDLYYQLKEDLELLDELGSALDLEQIHTGEMTPVFFGSAMTNFGVQLFLDAFLEYALKPGIHKSTVGEVSPTYPNFTGFVFKLQANMDPKHRDRVAFIRVCTGKFEKDMTVSHART-GKTVRLSRPQKLFAQDRASIENAYPGDIIGLNNPGVFAIGDTIYNG-KKIEYEGIPCFSPEIFAYLRNPNPSKFKQFRKGVNELREEGAVQIMYSA-DEAKRDPILAAVGQLQLEVVQFRMQNEYGVETRVEMLPFTVARWVDGGWEILQKV---GRLFNTVAVKDSWGRPVLLFKNQWNCQQVESEHPELKL 527          
BLAST of EWM21881.1 vs. NCBI_GenBank
Match: gi|737792514|ref|WP_035760108.1| (MULTISPECIES: peptide chain release factor 3 [Arthrospira])

HSP 1 Score: 667.537 bits (1721), Expect = 0.000e+0
Identity = 322/533 (60.41%), Postives = 401/533 (75.23%), Query Frame = 0
Query:  142 IQTVVSDKTKSKVLERRTFAIISHPDSGKTTLTEKLLLYGGAINEAGAVRSRASQRKTQSDFMEMEKQRGISISSTVLTFDYSGFQINLLDTPGHADFGEDTYRTLSAADNALMLVDAGKGLEAQTRKLFEVCRLRGLPIYTFVNKMDRPAKGPVELVDEIEREMGLEVVPMVWPIGDGEDFKGVYDREARVVHLFERQGRKEKAAALDALPLSDPGLPKLLGSTLFAQLEEDVELLDALMPSLDVAKVMRGEQTPMFFGSAMSNFGVALFLNKFLAISEPPAPRETTAGSIGPEHPEFTGFVFKLQANLNPKHRDRVAYVRICSGKFEKGMKVSHSRLRGRQVNLAQASMLFGQDRETIEEAYPGDVVGLNNPGLFAIGDSIYTGPKTVRFPGIPSFSPEVFAYIFNPSAGKYKSFKKGIDELLEEGAVQLLYERNDEGKTSPILAAVGPLQLEVVSYRMKEEYGVETRLEPLTFTAARWSEATWEDIDRADAEGLIFGAMKCKDRWGRPVLLFRNDWKINQVVDEAPYLKL 674
            + T + D+ + +V  RR FAIISHPD+GKTTLTEKLLLYGGAI+EAGAV+ R SQR   SD+M ME+QRGISI+STVL F+Y   QINLLDTPGH DF EDTYRTL+AADNA+ML DA KGLE QTRKLFEVC++RGLPI+TF+NKMDRP + P+EL+DEIE+E+GL   P+ WPIG G+ FKGV+DR    +HLFER     + A    + L DP +  LL   L+ QL+E++ELLDAL   LD++ V  G+ TP+FFGSAM+NFGV LFL+ FL  S  P P  +T G I P++PEFTGFVFKLQAN++PKHRDRVA+VR+C+G+FEK M VSH+R  G+ V L++   LF QDRE+IE AYPGDV+GLNNPG+FAIGD+IY G K + + GIP FSPE+FAY+ NP+  K+K F KGI EL EEGA+Q++Y ++D  K  PILAAVG LQ EVV +RM+ EYGVETRLE L ++ ARW    WE + +    G +F  +  KD WGRPVLLF+N+W   QV  E P L+L
Sbjct:    1 MSTEIKDELQLEVQRRRNFAIISHPDAGKTTLTEKLLLYGGAIHEAGAVKVRRSQRHATSDWMAMEQQRGISITSTVLQFEYHNTQINLLDTPGHQDFSEDTYRTLAAADNAVMLEDAAKGLEPQTRKLFEVCKMRGLPIFTFINKMDRPGREPLELLDEIEQELGLHPYPVNWPIGMGDRFKGVFDRHKGQIHLFERTAHGSREAVDTVIDLGDPRIEDLLDQDLYYQLKEELELLDALGSDLDLSAVHSGKMTPVFFGSAMTNFGVQLFLDAFLEYSLKPGPHNSTIGDIPPDYPEFTGFVFKLQANMDPKHRDRVAFVRVCTGRFEKDMTVSHART-GKTVRLSRPQKLFAQDRESIEAAYPGDVIGLNNPGVFAIGDTIYNGQK-LEYEGIPCFSPELFAYLKNPNPSKFKQFNKGITELREEGAIQIMYSQDD-SKRDPILAAVGQLQFEVVQFRMQNEYGVETRLELLPYSVARWVAGGWEALTKV---GRLFNTVTVKDSWGRPVLLFKNEWNCQQVQSEHPELEL 527          
BLAST of EWM21881.1 vs. NCBI_GenBank
Match: gi|505039078|ref|WP_015226180.1| (peptide chain release factor 3 [Halothece sp. PCC 7418] >gi|428691011|gb|AFZ44305.1| bacterial peptide chain release factor 3 (bRF-3) [Halothece sp. PCC 7418])

HSP 1 Score: 667.537 bits (1721), Expect = 0.000e+0
Identity = 308/524 (58.78%), Postives = 404/524 (77.10%), Query Frame = 0
Query:  151 KSKVLERRTFAIISHPDSGKTTLTEKLLLYGGAINEAGAVRSRASQRKTQSDFMEMEKQRGISISSTVLTFDYSGFQINLLDTPGHADFGEDTYRTLSAADNALMLVDAGKGLEAQTRKLFEVCRLRGLPIYTFVNKMDRPAKGPVELVDEIEREMGLEVVPMVWPIGDGEDFKGVYDREARVVHLFERQGRKEKAAALDALPLSDPGLPKLLGSTLFAQLEEDVELLDALMPSLDVAKVMRGEQTPMFFGSAMSNFGVALFLNKFLAISEPPAPRETTAGSIGPEHPEFTGFVFKLQANLNPKHRDRVAYVRICSGKFEKGMKVSHSRLRGRQVNLAQASMLFGQDRETIEEAYPGDVVGLNNPGLFAIGDSIYTGPKTVRFPGIPSFSPEVFAYIFNPSAGKYKSFKKGIDELLEEGAVQLLYERNDEGKTSPILAAVGPLQLEVVSYRMKEEYGVETRLEPLTFTAARWSEATWEDIDRADAEGLIFGAMKCKDRWGRPVLLFRNDWKINQVVDEAPYLKL 674
            K+ V  RR FAIISHPD+GKTTLTEKLLLYGGAI++AGAV+S+ +Q+K  SD+ME+EKQRGISI+STVL F+Y  FQINLLDTPGH DF EDTYRTL+AADNA+ML+DA KGLE QTRKLFEVCR+R LPI+TF NKMDRP++ P+EL+DEIE+E+GL+   + WPIG G+ FKGVYDR ++ +HLF+R       A    + L DP + ++L   L+ QL++++E+++ + P  D+ ++  GE TPMFFGSAM+NFGV LFL+ FL  ++PP   +++ G + P +P+FTGFVFKLQAN++PKHRDRVA+VR+C+GKFEK M V+H+R  G+ V L++   LF QDR++I+EAYPGDV+GLNNPG+FAIGD++Y G K V + GIP FSPE+FAY+ NP+  K+K F KG+ EL EEGA+Q++Y + DE K  PILAAVG LQ+EVV YRM+ EYGVET LE L +  ARW    WE +++A   G +F  +  KD W RPVLLF+N W ++Q+  + P LKL
Sbjct:   11 KTAVESRRNFAIISHPDAGKTTLTEKLLLYGGAIHQAGAVKSKRAQKKATSDWMELEKQRGISITSTVLQFNYQDFQINLLDTPGHQDFSEDTYRTLAAADNAVMLIDAAKGLEPQTRKLFEVCRMRSLPIFTFANKMDRPSREPLELIDEIEQELGLQTYAVNWPIGMGDRFKGVYDRRSQQIHLFQRTAHGSTQAETTVISLGDPKIEEILDQDLYFQLKDEIEIIEEVAPDFDLERIHNGELTPMFFGSAMTNFGVQLFLDAFLEYAQPPEAHQSSRGEMNPTYPDFTGFVFKLQANMDPKHRDRVAFVRVCTGKFEKDMSVNHART-GKSVRLSRPQKLFAQDRDSIDEAYPGDVIGLNNPGMFAIGDTVYAGKKVV-YEGIPCFSPELFAYLKNPNPSKFKQFHKGVTELREEGAIQIMYSK-DESKRDPILAAVGQLQIEVVQYRMENEYGVETSLEMLPYKVARWVTGGWEALEKA---GRLFNTVTVKDIWERPVLLFKNQWNLDQIQGDHPELKL 528          
The following BLAST results are available for this feature:
BLAST of EWM21881.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102225|gb|EWM21881.1|0.000e+0100.00peptide chain release factor 3 [Nannochloropsis ga... [more]
gi|299470098|emb|CBN78127.1|0.000e+064.49PRF3, plastid translation release factor RF3 [Ecto... [more]
gi|504974726|ref|WP_015161828.1|0.000e+060.60peptide chain release factor 3 [Chamaesiphon minut... [more]
gi|219120157|ref|XP_002180823.1|0.000e+055.77predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|397605645|gb|EJK59078.1|0.000e+059.93hypothetical protein THAOC_20746 [Thalassiosira oc... [more]
gi|1121281957|ref|WP_073595064.1|0.000e+060.23peptide chain release factor 3 [Phormidium ambiguu... [more]
gi|1072230127|gb|OEU14861.1|0.000e+059.38peptide chain release factor [Fragilariopsis cylin... [more]
gi|499931697|ref|WP_011612431.1|0.000e+060.11peptide chain release factor 3 [Trichodesmium eryt... [more]
gi|737792514|ref|WP_035760108.1|0.000e+060.41MULTISPECIES: peptide chain release factor 3 [Arth... [more]
gi|505039078|ref|WP_015226180.1|0.000e+058.78peptide chain release factor 3 [Halothece sp. PCC ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8826rna8826Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications