EWM21897.1, cds8784 (CDS) Nannochloropsis gaditana

Overview
NameEWM21897.1
Unique Namecds8784
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:230724..230897 +
Alignment locationKK037250.1:231074..231406 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21897.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100231g2.10128.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:230724..230897 +
KK037250.1supercontigKK037250.1:231074..231406 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM21897.1 vs. NCBI_GenBank
Match: gi|585102242|gb|EWM21897.1| (hypothetical protein Naga_100231g2 [Nannochloropsis gaditana])

HSP 1 Score: 329.717 bits (844), Expect = 4.111e-114
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 
Query:    1 MAITLVEPPSPYFLPLLIFIVLFEVALLLGKRQQCKSLTLEIKSLTLRKFELALAMKSLGIPTDFVKKSKLERELIQVEKDLAPRREQVLARAKDYDALASRLQYGVYALLVIVFWRTRLVVMSPAATWPLSSFFGFPRLGLGAVGVSAVISMAKAVIKPFTPLLSSV 168
            MAITLVEPPSPYFLPLLIFIVLFEVALLLGKRQQCKSLTLEIKSLTLRKFELALAMKSLGIPTDFVKKSKLERELIQVEKDLAPRREQVLARAKDYDALASRLQYGVYALLVIVFWRTRLVVMSPAATWPLSSFFGFPRLGLGAVGVSAVISMAKAVIKPFTPLLSSV
Sbjct:    1 MAITLVEPPSPYFLPLLIFIVLFEVALLLGKRQQCKSLTLEIKSLTLRKFELALAMKSLGIPTDFVKKSKLERELIQVEKDLAPRREQVLARAKDYDALASRLQYGVYALLVIVFWRTRLVVMSPAATWPLSSFFGFPRLGLGAVGVSAVISMAKAVIKPFTPLLSSV 168
[Close]
BLAST of EWM21897.1 vs. NCBI_GenBank
Match: gi|551653246|ref|XP_005829401.1| (hypothetical protein GUITHDRAFT_111699 [Guillardia theta CCMP2712] >gi|428173519|gb|EKX42421.1| hypothetical protein GUITHDRAFT_111699 [Guillardia theta CCMP2712])

HSP 1 Score: 58.151 bits (139), Expect = 6.409e-7
Identity = 37/124 (29.84%), Postives = 66/124 (53.23%), Query Frame = 0 
Query:   26 ALLLGKRQQCKSLTLEIKSLTLRKFELALAMKSLGIPTDFVKKSKLERELIQVEKDLAPRREQV--LARAKDYDALASRLQYGVYALLVIVFWRTRLVVMSPAATWPLSSFFGFPRLGLGAVGV 147
            +L   K  +   L+ EIKS+  +        K+L  P +FVK SK++R++ Q+E  L   +E +  ++ + + + + S L+  + A+LVI+FW T +  +     WP +  F FP    GA+G+
Sbjct:  231 SLKTAKVDEAVELSEEIKSMKQQH-------KALDTPDNFVKASKMKRQIDQMEMRLKELKESLRSVSNSHNRNFVHSLLEVIIPAVLVIMFWATPMHKLPKDMLWPFAGIFSFPAHEEGAIGI 347
The following BLAST results are available for this feature:
BLAST of EWM21897.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585102242|gb|EWM21897.1|4.111e-114100.00hypothetical protein Naga_100231g2 [Nannochloropsi... [more]
gi|551653246|ref|XP_005829401.1|6.409e-729.84hypothetical protein GUITHDRAFT_111699 [Guillardia... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8814rna8814Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications