EWM21904.1, cds8758 (CDS) Nannochloropsis gaditana

Overview
NameEWM21904.1
Unique Namecds8758
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:161945..162006 +
Alignment locationKK037250.1:162128..162192 +
Alignment locationKK037250.1:162257..162321 +
Alignment locationKK037250.1:162513..162671 +
Alignment locationKK037250.1:162750..162923 +
Alignment locationKK037250.1:163007..163255 +
Alignment locationKK037250.1:163434..163802 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21904.1
Productuncharacterized protein
Orig transcript idgnl|cribi|Naga_100070g13.4218.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:161945..162006 +
KK037250.1supercontigKK037250.1:162128..162192 +
KK037250.1supercontigKK037250.1:162257..162321 +
KK037250.1supercontigKK037250.1:162513..162671 +
KK037250.1supercontigKK037250.1:162750..162923 +
KK037250.1supercontigKK037250.1:163007..163255 +
KK037250.1supercontigKK037250.1:163434..163802 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0009507chloroplast
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR001727UPF0016
Homology
BLAST of EWM21904.1 vs. NCBI_GenBank
Match: gi|585102250|gb|EWM21904.1| (uncharacterized protein Naga_100070g13 [Nannochloropsis gaditana])

HSP 1 Score: 753.051 bits (1943), Expect = 0.000e+0
Identity = 380/380 (100.00%), Postives = 380/380 (100.00%), Query Frame = 0
Query:    1 MSFRKIFRGFSVLAAVLVCFSGRSGSAPVGFVTSPVHHTAALSFNAIGTRPGLRQSAFILQASESHEREGQHAPLYFWKEQHSATIAASKQLHMLTKHSEEKHGAVERSLGGVIVKGFKKVGAVGLAVALTGIVLIAGMPIGAHAASASLADLTAGASLSYNNVVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGGFKFDQWVAVAAFSYFGLKTLKDSYDMADGDSSGVDEERAEAEKAVQESSAPERRTPWGTILQIFSLVFAAEFGDRSFLSTIALGAAQNPFSVATGAIGAHATATGIAVASGAFLSKYFSEKLIGYIGGTLFIIFALTTALGIF 380
            MSFRKIFRGFSVLAAVLVCFSGRSGSAPVGFVTSPVHHTAALSFNAIGTRPGLRQSAFILQASESHEREGQHAPLYFWKEQHSATIAASKQLHMLTKHSEEKHGAVERSLGGVIVKGFKKVGAVGLAVALTGIVLIAGMPIGAHAASASLADLTAGASLSYNNVVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGGFKFDQWVAVAAFSYFGLKTLKDSYDMADGDSSGVDEERAEAEKAVQESSAPERRTPWGTILQIFSLVFAAEFGDRSFLSTIALGAAQNPFSVATGAIGAHATATGIAVASGAFLSKYFSEKLIGYIGGTLFIIFALTTALGIF
Sbjct:    1 MSFRKIFRGFSVLAAVLVCFSGRSGSAPVGFVTSPVHHTAALSFNAIGTRPGLRQSAFILQASESHEREGQHAPLYFWKEQHSATIAASKQLHMLTKHSEEKHGAVERSLGGVIVKGFKKVGAVGLAVALTGIVLIAGMPIGAHAASASLADLTAGASLSYNNVVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGGFKFDQWVAVAAFSYFGLKTLKDSYDMADGDSSGVDEERAEAEKAVQESSAPERRTPWGTILQIFSLVFAAEFGDRSFLSTIALGAAQNPFSVATGAIGAHATATGIAVASGAFLSKYFSEKLIGYIGGTLFIIFALTTALGIF 380          
BLAST of EWM21904.1 vs. NCBI_GenBank
Match: gi|224003533|ref|XP_002291438.1| (THAPSDRAFT_18109, partial [Thalassiosira pseudonana CCMP1335] >gi|220973214|gb|EED91545.1| uncharacterized protein THAPSDRAFT_18109, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 258.84 bits (660), Expect = 3.313e-82
Identity = 131/208 (62.98%), Postives = 160/208 (76.92%), Query Frame = 0
Query:  172 GFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGGFKFDQWVAVAAFSYFGLKTLKDSYDMADGDSSGVDEERAEAEKAVQESSAPERRTPWGTILQIFSLVFAAEFGDRSFLSTIALGAAQNPFSVATGAIGAHATATGIAVASGAFLSKYFSEKLIGYIGGTLFIIFALTTALGI 379
            GF QAFSLVF+SEIGDKTFF+A LLA K SR ISF GS+ AL+VMT+ISV+IGQ FHA+P G+  G   D   AV AF+YFG+K L ++++  DG +S +DEE  +AE+ V+ S    + +    I  IF+LVFAAEFGDRSFL+TIAL AAQNP SVA GAI AHA ATGIAV  GA++SKY SEK+IGYIGG+LF+IFA+TTA GI
Sbjct:    1 GFYQAFSLVFLSEIGDKTFFVAALLAAKLSRFISFVGSLGALAVMTVISVIIGQVFHAVPAGIANGVPLDDVAAVLAFTYFGIKILSEAFESDDGGTSAMDEEFEDAEETVEGSDTITKSSAGAQIASIFALVFAAEFGDRSFLATIALSAAQNPVSVALGAIAAHAVATGIAVVGGAYISKYVSEKVIGYIGGSLFLIFAVTTAFGI 208          
BLAST of EWM21904.1 vs. NCBI_GenBank
Match: gi|1210521367|dbj|GAX19824.1| (hypothetical protein FisN_11Lh307 [Fistulifera solaris])

HSP 1 Score: 244.973 bits (624), Expect = 7.425e-76
Identity = 133/215 (61.86%), Postives = 164/215 (76.28%), Query Frame = 0
Query:  166 AKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGGFKFDQWVAVAAFSYFGLKTLKDSYDMADGDSSGVDEERAEAEKAVQESSAPERRTPWGTILQIFSLVFAAEFGDRSFLSTIALGAAQNPFSVATGAIGAHATATGIAVASGAFLSKYFSEKLIGYIGGTLFIIFALTTALGIF 380
            + L  +GF QAF+LVF+SEIGDKTFF+AGLL MK  R ISF GS+ AL+VMT++SVLIGQ FH +P   GG    D   A+AAF++FG+KTL+D+  M  G  S +DEE AEAE+ VQE ++    +  G +  IF LVFAAEFGDRSFLSTIAL AAQNP SV  GAI AHA ATGIAVA G++L+KY SE++IG IGGTLF++FA+TTALG+F
Sbjct:   52 SSLTETGFYQAFTLVFLSEIGDKTFFVAGLLGMKLGRWISFVGSVGALAVMTVLSVLIGQVFHVMPSFGGGQIPLDDVAAIAAFAFFGIKTLQDALAMEPGAPSAMDEELAEAEETVQEQTSLLSASRLGQVASIFGLVFAAEFGDRSFLSTIALSAAQNPVSVCGGAIAAHALATGIAVAGGSYLAKYISERVIGIIGGTLFLVFAVTTALGVF 266          
BLAST of EWM21904.1 vs. NCBI_GenBank
Match: gi|1210528470|dbj|GAX12894.1| (hypothetical protein FisN_11Hh307 [Fistulifera solaris])

HSP 1 Score: 244.202 bits (622), Expect = 1.558e-75
Identity = 132/210 (62.86%), Postives = 162/210 (77.14%), Query Frame = 0
Query:  171 SGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGGFKFDQWVAVAAFSYFGLKTLKDSYDMADGDSSGVDEERAEAEKAVQESSAPERRTPWGTILQIFSLVFAAEFGDRSFLSTIALGAAQNPFSVATGAIGAHATATGIAVASGAFLSKYFSEKLIGYIGGTLFIIFALTTALGIF 380
            +GF QAF+LVF+SEIGDKTFF+AGLL MK  R ISF GS+ AL+VMT++SVLIGQ FH +P   GG    D   A+AAF++FG+KTL+D+  M  G  S +DEE AEAE+ VQE ++    +  G +  IF LVFAAEFGDRSFLSTIAL AAQNP SV  GAI AHA ATGIAVA G++L+KY SE++IG IGGTLF++FA+TTALG+F
Sbjct:   68 TGFYQAFTLVFLSEIGDKTFFVAGLLGMKLGRWISFVGSVGALAVMTVLSVLIGQVFHVMPSFGGGQIPLDDVAAIAAFAFFGIKTLQDALAMEPGAPSAMDEELAEAEETVQEQTSLLSASRLGQVASIFGLVFAAEFGDRSFLSTIALSAAQNPVSVCGGAIAAHALATGIAVAGGSYLAKYISERVIGIIGGTLFLVFAVTTALGVF 277          
BLAST of EWM21904.1 vs. NCBI_GenBank
Match: gi|397573344|gb|EJK48658.1| (hypothetical protein THAOC_32528 [Thalassiosira oceanica])

HSP 1 Score: 235.728 bits (600), Expect = 6.215e-72
Identity = 125/202 (61.88%), Postives = 150/202 (74.26%), Query Frame = 0
Query:  179 LVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGGFKFDQWVAVAAFSYFGLKTLKDSYDMADGDSSGVDEERAEAEKAVQESSAPERRTPWGTILQIFSLVFAAEFGDRSFLSTIALGAAQNPFSVATGAIGAHATATGIAVASGAFLSKYFSEKLIGYIGGTLFIIFALTTALGIF 380
            LVF+SEIGDKTFF+A LLA K SR+ISF GS+ AL+VMTIISV+IGQ FHA+P  L  G   D   AV AF+YFG+K L ++++  +G S+ +DEE  EA++ VQE+           I  IF LVFAAEFGDRSFL+TIAL AAQNP SVA G I AH  ATGIAV  GA++SKY SEK+I  IGGTLFIIFA+TTA+GIF
Sbjct:   91 LVFLSEIGDKTFFVAALLAAKLSRVISFVGSLGALAVMTIISVVIGQVFHAVPSELSNGLPLDDVAAVIAFTYFGVKILSEAFEEDEGKSA-MDEEFEEAQEVVQENDMTNSNA-GAQIASIFGLVFAAEFGDRSFLATIALSAAQNPVSVAAGGIAAHGIATGIAVIGGAYISKYVSEKVIAIIGGTLFIIFAITTAVGIF 290          
BLAST of EWM21904.1 vs. NCBI_GenBank
Match: gi|1072226716|gb|OEU11457.1| (UPF0016-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 224.942 bits (572), Expect = 1.140e-68
Identity = 145/223 (65.02%), Postives = 172/223 (77.13%), Query Frame = 0
Query:  165 VAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGG-------FKFDQWVAVAAFSYFGLKTLKDSYDMADGDSSGVDEERAEAEKAVQESSAPERRTPWGTILQIFSLVFAAEFGDRSFLSTIALGAAQNPFSVATGAIGAHATATGIAVASGAFLSKYFSEKLIGYIGGTLFIIFALTTALGIF 380
            +AKLA +GF QAFSLVFVSEIGDKTFF+AGLLAMKTSR+ISF GSM AL VMT+ISV+IGQ FHA+P GL GG          D   AV AF++FG KT+ D+ ++ DG+S  +DEE A+AE+ V+ S   ++ T    IL IF LVFAAEFGDRSFLSTIAL AAQNP SVA GAI AHA ATGIAV+ GA +++Y SEK+IG IGGTLFI+FA+TTA GIF
Sbjct:    1 MAKLADTGFYQAFSLVFVSEIGDKTFFMAGLLAMKTSRVISFIGSMGALFVMTLISVIIGQTFHAVPAGLLGGESSFLGSLPLDDIAAVIAFAFFGFKTISDALNLEDGESV-MDEELADAEEEVENSDTTKQGTQIARILSIFGLVFAAEFGDRSFLSTIALSAAQNPVSVAAGAIAAHAAATGIAVSGGAVVARYLSEKVIGLIGGTLFIVFAVTTAFGIF 222          
BLAST of EWM21904.1 vs. NCBI_GenBank
Match: gi|219118730|ref|XP_002180132.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408389|gb|EEC48323.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 217.238 bits (552), Expect = 6.734e-66
Identity = 132/210 (62.86%), Postives = 162/210 (77.14%), Query Frame = 0
Query:  172 GFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGGFKFDQWVAVAAFSYFGLKTLKDSYDMADGDSSGVDEERAEAEKAVQE-SSAPERRTPWGTILQIFSLVFAAEFGDRSFLSTIALGAAQNPFSVATGAIGAHATATGIAVASGAFLSKYFSEKLIGYIGGTLFIIFALTTALGIF 380
            GF QAFSLVF+SEIGDKTFF+AGLLA +TSR ISF GSM AL+ MT+ISVLIGQ FH +P GL  G   D   AV AF++FG+KTL +++  A+ + S ++EE  EA++ V + SS+   +T  GTI  IF+LVFAAEFGDRSFLSTIAL AAQNP SVA GAI AHA ATG+AV+ GA L+KY SE+ +G I GTLF++FA+TTA GIF
Sbjct:    1 GFYQAFSLVFLSEIGDKTFFVAGLLAAQTSRFISFVGSMGALATMTVISVLIGQIFHKVPAGLADGIPLDDIAAVIAFAFFGIKTLMEAF--ANTEESAMNEELEEAKEEVDKTSSSLADKTALGTIASIFALVFAAEFGDRSFLSTIALSAAQNPVSVAGGAIAAHAAATGVAVSGGAVLAKYISERALGIISGTLFLVFAVTTAFGIF 208          
BLAST of EWM21904.1 vs. NCBI_GenBank
Match: gi|1002846964|ref|XP_015690237.1| (PREDICTED: GDT1-like protein 2, chloroplastic isoform X2 [Oryza brachyantha])

HSP 1 Score: 216.468 bits (550), Expect = 4.128e-64
Identity = 115/222 (51.80%), Postives = 154/222 (69.37%), Query Frame = 0
Query:  164 VVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGGFKFDQWVAVAAFSYFGLKTLKDSYDMAD---GDSSGVDE--ERAEAEKAVQESSAPERRTPWGTILQIFSLVFAAEFGDRSFLSTIALGAAQNPFSVATGAIGAHATATGIAVASGAFLSKYFSEKLIGYIGGTLFIIFALTTALGIF 380
            VVA LA SGF  AF+L+FVSEIGDKTFFIA LLAM+  R +   GSMAALS+MTI+SV+IG+ F ++P          ++ A+A  ++FG K++KD++ + D   G+  G  E  E AEAE+ V+E  + +  +P   + + FSLVF AE+GDRS L+TIALGAAQ+PF VA+GAI  H  AT +A+  GAFL+ Y SEKL+G IGG LF++FA  T  G+F
Sbjct:   94 VVAMLAKSGFTAAFTLIFVSEIGDKTFFIAALLAMQYQRALVLLGSMAALSLMTIVSVIIGRIFQSVPAQFQTTLPIGEYAAIALLAFFGFKSIKDAWQLPDNTNGNLQGNSESGELAEAEELVKEKVSKKLTSPLEVLWKSFSLVFFAEWGDRSMLATIALGAAQSPFGVASGAIAGHLVATSLAIVGGAFLANYLSEKLVGLIGGVLFLLFAAATFFGVF 315          
BLAST of EWM21904.1 vs. NCBI_GenBank
Match: gi|1002304121|ref|XP_015615427.1| (PREDICTED: GDT1-like protein 2, chloroplastic [Oryza sativa Japonica Group] >gi|122207238|sp|Q2R2Z4.1|GDT12_ORYSJ RecName: Full=GDT1-like protein 2, chloroplastic; Flags: Precursor >gi|77551400|gb|ABA94197.1| Uncharacterized protein family UPF0016 containing protein, expressed [Oryza sativa Japonica Group] >gi|113645275|dbj|BAF28416.1| Os11g0544500 [Oryza sativa Japonica Group] >gi|215701352|dbj|BAG92776.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215704478|dbj|BAG93912.1| unnamed protein product [Oryza sativa Japonica Group] >gi|937939446|dbj|BAT14359.1| Os11g0544500 [Oryza sativa Japonica Group])

HSP 1 Score: 217.238 bits (552), Expect = 4.651e-64
Identity = 117/222 (52.70%), Postives = 156/222 (70.27%), Query Frame = 0
Query:  164 VVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGGFKFDQWVAVAAFSYFGLKTLKDSY---DMADGDSSGVDE--ERAEAEKAVQESSAPERRTPWGTILQIFSLVFAAEFGDRSFLSTIALGAAQNPFSVATGAIGAHATATGIAVASGAFLSKYFSEKLIGYIGGTLFIIFALTTALGIF 380
            VVA LA SGF  AF+L+FVSEIGDKTFFIA LLAM+  R +   GSMAALS+MTI+SV+IG+ F ++P          ++ A+A  ++FG K++KD++   D A+G+  G  E  E AEAE+ V+E  A +  +P   + + FSLVF AE+GDRS L+TIALGAAQ+PF VA+GAI  H  AT +A+  GAFL+ Y SEKL+G IGG LF++FA+ T  G+F
Sbjct:  126 VVAMLAKSGFTAAFTLIFVSEIGDKTFFIAALLAMQYQRALVLLGSMAALSLMTIVSVIIGRIFQSVPAQFQTTLPIGEYAAIALLAFFGFKSIKDAWQLPDNANGNLQGNSESGELAEAEELVKEKVAKKLTSPLEVLWKSFSLVFFAEWGDRSMLATIALGAAQSPFGVASGAIAGHLVATFLAIVGGAFLANYLSEKLVGLIGGVLFLLFAVATFFGVF 347          
BLAST of EWM21904.1 vs. NCBI_GenBank
Match: gi|1002846962|ref|XP_015690236.1| (PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Oryza brachyantha])

HSP 1 Score: 216.083 bits (549), Expect = 5.386e-64
Identity = 115/222 (51.80%), Postives = 154/222 (69.37%), Query Frame = 0
Query:  164 VVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGGFKFDQWVAVAAFSYFGLKTLKDSYDMAD---GDSSGVDE--ERAEAEKAVQESSAPERRTPWGTILQIFSLVFAAEFGDRSFLSTIALGAAQNPFSVATGAIGAHATATGIAVASGAFLSKYFSEKLIGYIGGTLFIIFALTTALGIF 380
            VVA LA SGF  AF+L+FVSEIGDKTFFIA LLAM+  R +   GSMAALS+MTI+SV+IG+ F ++P          ++ A+A  ++FG K++KD++ + D   G+  G  E  E AEAE+ V+E  + +  +P   + + FSLVF AE+GDRS L+TIALGAAQ+PF VA+GAI  H  AT +A+  GAFL+ Y SEKL+G IGG LF++FA  T  G+F
Sbjct:   95 VVAMLAKSGFTAAFTLIFVSEIGDKTFFIAALLAMQYQRALVLLGSMAALSLMTIVSVIIGRIFQSVPAQFQTTLPIGEYAAIALLAFFGFKSIKDAWQLPDNTNGNLQGNSESGELAEAEELVKEKVSKKLTSPLEVLWKSFSLVFFAEWGDRSMLATIALGAAQSPFGVASGAIAGHLVATSLAIVGGAFLANYLSEKLVGLIGGVLFLLFAAATFFGVF 316          
The following BLAST results are available for this feature:
BLAST of EWM21904.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102250|gb|EWM21904.1|0.000e+0100.00uncharacterized protein Naga_100070g13 [Nannochlor... [more]
gi|224003533|ref|XP_002291438.1|3.313e-8262.98THAPSDRAFT_18109, partial [Thalassiosira pseudonan... [more]
gi|1210521367|dbj|GAX19824.1|7.425e-7661.86hypothetical protein FisN_11Lh307 [Fistulifera sol... [more]
gi|1210528470|dbj|GAX12894.1|1.558e-7562.86hypothetical protein FisN_11Hh307 [Fistulifera sol... [more]
gi|397573344|gb|EJK48658.1|6.215e-7261.88hypothetical protein THAOC_32528 [Thalassiosira oc... [more]
gi|1072226716|gb|OEU11457.1|1.140e-6865.02UPF0016-domain-containing protein [Fragilariopsis ... [more]
gi|219118730|ref|XP_002180132.1|6.734e-6662.86predicted protein, partial [Phaeodactylum tricornu... [more]
gi|1002846964|ref|XP_015690237.1|4.128e-6451.80PREDICTED: GDT1-like protein 2, chloroplastic isof... [more]
gi|1002304121|ref|XP_015615427.1|4.651e-6452.70PREDICTED: GDT1-like protein 2, chloroplastic [Ory... [more]
gi|1002846962|ref|XP_015690236.1|5.386e-6451.80PREDICTED: GDT1-like protein 2, chloroplastic isof... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8788rna8788Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications