EWM21904.1, cds8758 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21904.1 vs. NCBI_GenBank
Match: gi|585102250|gb|EWM21904.1| (uncharacterized protein Naga_100070g13 [Nannochloropsis gaditana]) HSP 1 Score: 753.051 bits (1943), Expect = 0.000e+0 Identity = 380/380 (100.00%), Postives = 380/380 (100.00%), Query Frame = 0
Query: 1 MSFRKIFRGFSVLAAVLVCFSGRSGSAPVGFVTSPVHHTAALSFNAIGTRPGLRQSAFILQASESHEREGQHAPLYFWKEQHSATIAASKQLHMLTKHSEEKHGAVERSLGGVIVKGFKKVGAVGLAVALTGIVLIAGMPIGAHAASASLADLTAGASLSYNNVVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGGFKFDQWVAVAAFSYFGLKTLKDSYDMADGDSSGVDEERAEAEKAVQESSAPERRTPWGTILQIFSLVFAAEFGDRSFLSTIALGAAQNPFSVATGAIGAHATATGIAVASGAFLSKYFSEKLIGYIGGTLFIIFALTTALGIF 380
MSFRKIFRGFSVLAAVLVCFSGRSGSAPVGFVTSPVHHTAALSFNAIGTRPGLRQSAFILQASESHEREGQHAPLYFWKEQHSATIAASKQLHMLTKHSEEKHGAVERSLGGVIVKGFKKVGAVGLAVALTGIVLIAGMPIGAHAASASLADLTAGASLSYNNVVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGGFKFDQWVAVAAFSYFGLKTLKDSYDMADGDSSGVDEERAEAEKAVQESSAPERRTPWGTILQIFSLVFAAEFGDRSFLSTIALGAAQNPFSVATGAIGAHATATGIAVASGAFLSKYFSEKLIGYIGGTLFIIFALTTALGIF
Sbjct: 1 MSFRKIFRGFSVLAAVLVCFSGRSGSAPVGFVTSPVHHTAALSFNAIGTRPGLRQSAFILQASESHEREGQHAPLYFWKEQHSATIAASKQLHMLTKHSEEKHGAVERSLGGVIVKGFKKVGAVGLAVALTGIVLIAGMPIGAHAASASLADLTAGASLSYNNVVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGGFKFDQWVAVAAFSYFGLKTLKDSYDMADGDSSGVDEERAEAEKAVQESSAPERRTPWGTILQIFSLVFAAEFGDRSFLSTIALGAAQNPFSVATGAIGAHATATGIAVASGAFLSKYFSEKLIGYIGGTLFIIFALTTALGIF 380
BLAST of EWM21904.1 vs. NCBI_GenBank
Match: gi|224003533|ref|XP_002291438.1| (THAPSDRAFT_18109, partial [Thalassiosira pseudonana CCMP1335] >gi|220973214|gb|EED91545.1| uncharacterized protein THAPSDRAFT_18109, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 258.84 bits (660), Expect = 3.313e-82 Identity = 131/208 (62.98%), Postives = 160/208 (76.92%), Query Frame = 0
Query: 172 GFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGGFKFDQWVAVAAFSYFGLKTLKDSYDMADGDSSGVDEERAEAEKAVQESSAPERRTPWGTILQIFSLVFAAEFGDRSFLSTIALGAAQNPFSVATGAIGAHATATGIAVASGAFLSKYFSEKLIGYIGGTLFIIFALTTALGI 379
GF QAFSLVF+SEIGDKTFF+A LLA K SR ISF GS+ AL+VMT+ISV+IGQ FHA+P G+ G D AV AF+YFG+K L ++++ DG +S +DEE +AE+ V+ S + + I IF+LVFAAEFGDRSFL+TIAL AAQNP SVA GAI AHA ATGIAV GA++SKY SEK+IGYIGG+LF+IFA+TTA GI
Sbjct: 1 GFYQAFSLVFLSEIGDKTFFVAALLAAKLSRFISFVGSLGALAVMTVISVIIGQVFHAVPAGIANGVPLDDVAAVLAFTYFGIKILSEAFESDDGGTSAMDEEFEDAEETVEGSDTITKSSAGAQIASIFALVFAAEFGDRSFLATIALSAAQNPVSVALGAIAAHAVATGIAVVGGAYISKYVSEKVIGYIGGSLFLIFAVTTAFGI 208
BLAST of EWM21904.1 vs. NCBI_GenBank
Match: gi|1210521367|dbj|GAX19824.1| (hypothetical protein FisN_11Lh307 [Fistulifera solaris]) HSP 1 Score: 244.973 bits (624), Expect = 7.425e-76 Identity = 133/215 (61.86%), Postives = 164/215 (76.28%), Query Frame = 0
Query: 166 AKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGGFKFDQWVAVAAFSYFGLKTLKDSYDMADGDSSGVDEERAEAEKAVQESSAPERRTPWGTILQIFSLVFAAEFGDRSFLSTIALGAAQNPFSVATGAIGAHATATGIAVASGAFLSKYFSEKLIGYIGGTLFIIFALTTALGIF 380
+ L +GF QAF+LVF+SEIGDKTFF+AGLL MK R ISF GS+ AL+VMT++SVLIGQ FH +P GG D A+AAF++FG+KTL+D+ M G S +DEE AEAE+ VQE ++ + G + IF LVFAAEFGDRSFLSTIAL AAQNP SV GAI AHA ATGIAVA G++L+KY SE++IG IGGTLF++FA+TTALG+F
Sbjct: 52 SSLTETGFYQAFTLVFLSEIGDKTFFVAGLLGMKLGRWISFVGSVGALAVMTVLSVLIGQVFHVMPSFGGGQIPLDDVAAIAAFAFFGIKTLQDALAMEPGAPSAMDEELAEAEETVQEQTSLLSASRLGQVASIFGLVFAAEFGDRSFLSTIALSAAQNPVSVCGGAIAAHALATGIAVAGGSYLAKYISERVIGIIGGTLFLVFAVTTALGVF 266
BLAST of EWM21904.1 vs. NCBI_GenBank
Match: gi|1210528470|dbj|GAX12894.1| (hypothetical protein FisN_11Hh307 [Fistulifera solaris]) HSP 1 Score: 244.202 bits (622), Expect = 1.558e-75 Identity = 132/210 (62.86%), Postives = 162/210 (77.14%), Query Frame = 0
Query: 171 SGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGGFKFDQWVAVAAFSYFGLKTLKDSYDMADGDSSGVDEERAEAEKAVQESSAPERRTPWGTILQIFSLVFAAEFGDRSFLSTIALGAAQNPFSVATGAIGAHATATGIAVASGAFLSKYFSEKLIGYIGGTLFIIFALTTALGIF 380
+GF QAF+LVF+SEIGDKTFF+AGLL MK R ISF GS+ AL+VMT++SVLIGQ FH +P GG D A+AAF++FG+KTL+D+ M G S +DEE AEAE+ VQE ++ + G + IF LVFAAEFGDRSFLSTIAL AAQNP SV GAI AHA ATGIAVA G++L+KY SE++IG IGGTLF++FA+TTALG+F
Sbjct: 68 TGFYQAFTLVFLSEIGDKTFFVAGLLGMKLGRWISFVGSVGALAVMTVLSVLIGQVFHVMPSFGGGQIPLDDVAAIAAFAFFGIKTLQDALAMEPGAPSAMDEELAEAEETVQEQTSLLSASRLGQVASIFGLVFAAEFGDRSFLSTIALSAAQNPVSVCGGAIAAHALATGIAVAGGSYLAKYISERVIGIIGGTLFLVFAVTTALGVF 277
BLAST of EWM21904.1 vs. NCBI_GenBank
Match: gi|397573344|gb|EJK48658.1| (hypothetical protein THAOC_32528 [Thalassiosira oceanica]) HSP 1 Score: 235.728 bits (600), Expect = 6.215e-72 Identity = 125/202 (61.88%), Postives = 150/202 (74.26%), Query Frame = 0
Query: 179 LVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGGFKFDQWVAVAAFSYFGLKTLKDSYDMADGDSSGVDEERAEAEKAVQESSAPERRTPWGTILQIFSLVFAAEFGDRSFLSTIALGAAQNPFSVATGAIGAHATATGIAVASGAFLSKYFSEKLIGYIGGTLFIIFALTTALGIF 380
LVF+SEIGDKTFF+A LLA K SR+ISF GS+ AL+VMTIISV+IGQ FHA+P L G D AV AF+YFG+K L ++++ +G S+ +DEE EA++ VQE+ I IF LVFAAEFGDRSFL+TIAL AAQNP SVA G I AH ATGIAV GA++SKY SEK+I IGGTLFIIFA+TTA+GIF
Sbjct: 91 LVFLSEIGDKTFFVAALLAAKLSRVISFVGSLGALAVMTIISVVIGQVFHAVPSELSNGLPLDDVAAVIAFTYFGVKILSEAFEEDEGKSA-MDEEFEEAQEVVQENDMTNSNA-GAQIASIFGLVFAAEFGDRSFLATIALSAAQNPVSVAAGGIAAHGIATGIAVIGGAYISKYVSEKVIAIIGGTLFIIFAITTAVGIF 290
BLAST of EWM21904.1 vs. NCBI_GenBank
Match: gi|1072226716|gb|OEU11457.1| (UPF0016-domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 224.942 bits (572), Expect = 1.140e-68 Identity = 145/223 (65.02%), Postives = 172/223 (77.13%), Query Frame = 0
Query: 165 VAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGG-------FKFDQWVAVAAFSYFGLKTLKDSYDMADGDSSGVDEERAEAEKAVQESSAPERRTPWGTILQIFSLVFAAEFGDRSFLSTIALGAAQNPFSVATGAIGAHATATGIAVASGAFLSKYFSEKLIGYIGGTLFIIFALTTALGIF 380
+AKLA +GF QAFSLVFVSEIGDKTFF+AGLLAMKTSR+ISF GSM AL VMT+ISV+IGQ FHA+P GL GG D AV AF++FG KT+ D+ ++ DG+S +DEE A+AE+ V+ S ++ T IL IF LVFAAEFGDRSFLSTIAL AAQNP SVA GAI AHA ATGIAV+ GA +++Y SEK+IG IGGTLFI+FA+TTA GIF
Sbjct: 1 MAKLADTGFYQAFSLVFVSEIGDKTFFMAGLLAMKTSRVISFIGSMGALFVMTLISVIIGQTFHAVPAGLLGGESSFLGSLPLDDIAAVIAFAFFGFKTISDALNLEDGESV-MDEELADAEEEVENSDTTKQGTQIARILSIFGLVFAAEFGDRSFLSTIALSAAQNPVSVAAGAIAAHAAATGIAVSGGAVVARYLSEKVIGLIGGTLFIVFAVTTAFGIF 222
BLAST of EWM21904.1 vs. NCBI_GenBank
Match: gi|219118730|ref|XP_002180132.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408389|gb|EEC48323.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 217.238 bits (552), Expect = 6.734e-66 Identity = 132/210 (62.86%), Postives = 162/210 (77.14%), Query Frame = 0
Query: 172 GFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGGFKFDQWVAVAAFSYFGLKTLKDSYDMADGDSSGVDEERAEAEKAVQE-SSAPERRTPWGTILQIFSLVFAAEFGDRSFLSTIALGAAQNPFSVATGAIGAHATATGIAVASGAFLSKYFSEKLIGYIGGTLFIIFALTTALGIF 380
GF QAFSLVF+SEIGDKTFF+AGLLA +TSR ISF GSM AL+ MT+ISVLIGQ FH +P GL G D AV AF++FG+KTL +++ A+ + S ++EE EA++ V + SS+ +T GTI IF+LVFAAEFGDRSFLSTIAL AAQNP SVA GAI AHA ATG+AV+ GA L+KY SE+ +G I GTLF++FA+TTA GIF
Sbjct: 1 GFYQAFSLVFLSEIGDKTFFVAGLLAAQTSRFISFVGSMGALATMTVISVLIGQIFHKVPAGLADGIPLDDIAAVIAFAFFGIKTLMEAF--ANTEESAMNEELEEAKEEVDKTSSSLADKTALGTIASIFALVFAAEFGDRSFLSTIALSAAQNPVSVAGGAIAAHAAATGVAVSGGAVLAKYISERALGIISGTLFLVFAVTTAFGIF 208
BLAST of EWM21904.1 vs. NCBI_GenBank
Match: gi|1002846964|ref|XP_015690237.1| (PREDICTED: GDT1-like protein 2, chloroplastic isoform X2 [Oryza brachyantha]) HSP 1 Score: 216.468 bits (550), Expect = 4.128e-64 Identity = 115/222 (51.80%), Postives = 154/222 (69.37%), Query Frame = 0
Query: 164 VVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGGFKFDQWVAVAAFSYFGLKTLKDSYDMAD---GDSSGVDE--ERAEAEKAVQESSAPERRTPWGTILQIFSLVFAAEFGDRSFLSTIALGAAQNPFSVATGAIGAHATATGIAVASGAFLSKYFSEKLIGYIGGTLFIIFALTTALGIF 380
VVA LA SGF AF+L+FVSEIGDKTFFIA LLAM+ R + GSMAALS+MTI+SV+IG+ F ++P ++ A+A ++FG K++KD++ + D G+ G E E AEAE+ V+E + + +P + + FSLVF AE+GDRS L+TIALGAAQ+PF VA+GAI H AT +A+ GAFL+ Y SEKL+G IGG LF++FA T G+F
Sbjct: 94 VVAMLAKSGFTAAFTLIFVSEIGDKTFFIAALLAMQYQRALVLLGSMAALSLMTIVSVIIGRIFQSVPAQFQTTLPIGEYAAIALLAFFGFKSIKDAWQLPDNTNGNLQGNSESGELAEAEELVKEKVSKKLTSPLEVLWKSFSLVFFAEWGDRSMLATIALGAAQSPFGVASGAIAGHLVATSLAIVGGAFLANYLSEKLVGLIGGVLFLLFAAATFFGVF 315
BLAST of EWM21904.1 vs. NCBI_GenBank
Match: gi|1002304121|ref|XP_015615427.1| (PREDICTED: GDT1-like protein 2, chloroplastic [Oryza sativa Japonica Group] >gi|122207238|sp|Q2R2Z4.1|GDT12_ORYSJ RecName: Full=GDT1-like protein 2, chloroplastic; Flags: Precursor >gi|77551400|gb|ABA94197.1| Uncharacterized protein family UPF0016 containing protein, expressed [Oryza sativa Japonica Group] >gi|113645275|dbj|BAF28416.1| Os11g0544500 [Oryza sativa Japonica Group] >gi|215701352|dbj|BAG92776.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215704478|dbj|BAG93912.1| unnamed protein product [Oryza sativa Japonica Group] >gi|937939446|dbj|BAT14359.1| Os11g0544500 [Oryza sativa Japonica Group]) HSP 1 Score: 217.238 bits (552), Expect = 4.651e-64 Identity = 117/222 (52.70%), Postives = 156/222 (70.27%), Query Frame = 0
Query: 164 VVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGGFKFDQWVAVAAFSYFGLKTLKDSY---DMADGDSSGVDE--ERAEAEKAVQESSAPERRTPWGTILQIFSLVFAAEFGDRSFLSTIALGAAQNPFSVATGAIGAHATATGIAVASGAFLSKYFSEKLIGYIGGTLFIIFALTTALGIF 380
VVA LA SGF AF+L+FVSEIGDKTFFIA LLAM+ R + GSMAALS+MTI+SV+IG+ F ++P ++ A+A ++FG K++KD++ D A+G+ G E E AEAE+ V+E A + +P + + FSLVF AE+GDRS L+TIALGAAQ+PF VA+GAI H AT +A+ GAFL+ Y SEKL+G IGG LF++FA+ T G+F
Sbjct: 126 VVAMLAKSGFTAAFTLIFVSEIGDKTFFIAALLAMQYQRALVLLGSMAALSLMTIVSVIIGRIFQSVPAQFQTTLPIGEYAAIALLAFFGFKSIKDAWQLPDNANGNLQGNSESGELAEAEELVKEKVAKKLTSPLEVLWKSFSLVFFAEWGDRSMLATIALGAAQSPFGVASGAIAGHLVATFLAIVGGAFLANYLSEKLVGLIGGVLFLLFAVATFFGVF 347
BLAST of EWM21904.1 vs. NCBI_GenBank
Match: gi|1002846962|ref|XP_015690236.1| (PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Oryza brachyantha]) HSP 1 Score: 216.083 bits (549), Expect = 5.386e-64 Identity = 115/222 (51.80%), Postives = 154/222 (69.37%), Query Frame = 0
Query: 164 VVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGGFKFDQWVAVAAFSYFGLKTLKDSYDMAD---GDSSGVDE--ERAEAEKAVQESSAPERRTPWGTILQIFSLVFAAEFGDRSFLSTIALGAAQNPFSVATGAIGAHATATGIAVASGAFLSKYFSEKLIGYIGGTLFIIFALTTALGIF 380
VVA LA SGF AF+L+FVSEIGDKTFFIA LLAM+ R + GSMAALS+MTI+SV+IG+ F ++P ++ A+A ++FG K++KD++ + D G+ G E E AEAE+ V+E + + +P + + FSLVF AE+GDRS L+TIALGAAQ+PF VA+GAI H AT +A+ GAFL+ Y SEKL+G IGG LF++FA T G+F
Sbjct: 95 VVAMLAKSGFTAAFTLIFVSEIGDKTFFIAALLAMQYQRALVLLGSMAALSLMTIVSVIIGRIFQSVPAQFQTTLPIGEYAAIALLAFFGFKSIKDAWQLPDNTNGNLQGNSESGELAEAEELVKEKVSKKLTSPLEVLWKSFSLVFFAEWGDRSMLATIALGAAQSPFGVASGAIAGHLVATSLAIVGGAFLANYLSEKLVGLIGGVLFLLFAAATFFGVF 316 The following BLAST results are available for this feature:
BLAST of EWM21904.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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