EWM21932.1, cds8743 (CDS) Nannochloropsis gaditana

Overview
NameEWM21932.1
Unique Namecds8743
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:127924..128115 +
Alignment locationKK037250.1:128197..128692 +
Alignment locationKK037250.1:128816..128914 +
Alignment locationKK037250.1:129041..129192 +
Alignment locationKK037250.1:129268..129340 +
Alignment locationKK037250.1:129425..130074 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21932.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100220g3.7207.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:127924..128115 +
KK037250.1supercontigKK037250.1:128197..128692 +
KK037250.1supercontigKK037250.1:128816..128914 +
KK037250.1supercontigKK037250.1:129041..129192 +
KK037250.1supercontigKK037250.1:129268..129340 +
KK037250.1supercontigKK037250.1:129425..130074 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM21932.1 vs. NCBI_GenBank
Match: gi|585102279|gb|EWM21932.1| (hypothetical protein Naga_100220g3 [Nannochloropsis gaditana])

HSP 1 Score: 1141.33 bits (2951), Expect = 0.000e+0
Identity = 553/553 (100.00%), Postives = 553/553 (100.00%), Query Frame = 0
Query:    1 MATDAGRVRPTSASSSVTNLSDSHAPITEEMDGTFLPATEVVEAEEQDVVGAWGRPISRFGFHRHGVYRRKPRLFPSSMVANAQRVESIFLRHYRENILDKIQGEKVEPMKPKRPVRRTAAAEAGDPAHCFNGDRNGTSPAPQAGHVLGRRGPALSDVEQAHLPEGQTDESEHTQQKASADLKELRRATRSTGRGIEDWIKIPVAATVRVPSGDLEKLDGMVYVSTDTGAFFRQQGGVYFETMWKGSVHKYFIPDSELPMVSEDHFLFKEERARIEEDRLKRLSQAKHMLELGCTNEEVTFDIEKKAADRTLESRKEELRERMLGRAEDILEELEEEVAITSLPLIRESSAHHKSLAWSGSTPATSQSPARVRARRRRSGSEFSDAETLVLEKEIKAAHKENNVPNRSTRMSSSRNLSASAEMGPSDSQQQPLFPALKSDVSKMDSSSEGRTDAQDVETECNLLKDENQAYESFCTNRISVIEESGPVTPPSKRQKINAADLAICTLAIASDISTGLRETGYVRDYEYVDIHEVVVDKMFPDADWGEDQDLIV 553
            MATDAGRVRPTSASSSVTNLSDSHAPITEEMDGTFLPATEVVEAEEQDVVGAWGRPISRFGFHRHGVYRRKPRLFPSSMVANAQRVESIFLRHYRENILDKIQGEKVEPMKPKRPVRRTAAAEAGDPAHCFNGDRNGTSPAPQAGHVLGRRGPALSDVEQAHLPEGQTDESEHTQQKASADLKELRRATRSTGRGIEDWIKIPVAATVRVPSGDLEKLDGMVYVSTDTGAFFRQQGGVYFETMWKGSVHKYFIPDSELPMVSEDHFLFKEERARIEEDRLKRLSQAKHMLELGCTNEEVTFDIEKKAADRTLESRKEELRERMLGRAEDILEELEEEVAITSLPLIRESSAHHKSLAWSGSTPATSQSPARVRARRRRSGSEFSDAETLVLEKEIKAAHKENNVPNRSTRMSSSRNLSASAEMGPSDSQQQPLFPALKSDVSKMDSSSEGRTDAQDVETECNLLKDENQAYESFCTNRISVIEESGPVTPPSKRQKINAADLAICTLAIASDISTGLRETGYVRDYEYVDIHEVVVDKMFPDADWGEDQDLIV
Sbjct:    1 MATDAGRVRPTSASSSVTNLSDSHAPITEEMDGTFLPATEVVEAEEQDVVGAWGRPISRFGFHRHGVYRRKPRLFPSSMVANAQRVESIFLRHYRENILDKIQGEKVEPMKPKRPVRRTAAAEAGDPAHCFNGDRNGTSPAPQAGHVLGRRGPALSDVEQAHLPEGQTDESEHTQQKASADLKELRRATRSTGRGIEDWIKIPVAATVRVPSGDLEKLDGMVYVSTDTGAFFRQQGGVYFETMWKGSVHKYFIPDSELPMVSEDHFLFKEERARIEEDRLKRLSQAKHMLELGCTNEEVTFDIEKKAADRTLESRKEELRERMLGRAEDILEELEEEVAITSLPLIRESSAHHKSLAWSGSTPATSQSPARVRARRRRSGSEFSDAETLVLEKEIKAAHKENNVPNRSTRMSSSRNLSASAEMGPSDSQQQPLFPALKSDVSKMDSSSEGRTDAQDVETECNLLKDENQAYESFCTNRISVIEESGPVTPPSKRQKINAADLAICTLAIASDISTGLRETGYVRDYEYVDIHEVVVDKMFPDADWGEDQDLIV 553          
BLAST of EWM21932.1 vs. NCBI_GenBank
Match: gi|553182016|ref|XP_005853663.1| (hypothetical protein NGA_0106502, partial [Nannochloropsis gaditana CCMP526] >gi|422295396|gb|EKU22695.1| hypothetical protein NGA_0106502, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 193.741 bits (491), Expect = 1.930e-56
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0
Query:  243 MWKGSVHKYFIPDSELPMVSEDHFLFKEERARIEEDRLKRLSQAKHMLELGCTNEEVTFDIEKKAADRTLESRKEELRERMLGRAEDILEELEEE 337
            MWKGSVHKYFIPDSELPMVSEDHFLFKEERARIEEDRLKRLSQAKHMLELGCTNEEVTFDIEKKAADRTLESRKEELRERMLGRAEDILEELEEE
Sbjct:    1 MWKGSVHKYFIPDSELPMVSEDHFLFKEERARIEEDRLKRLSQAKHMLELGCTNEEVTFDIEKKAADRTLESRKEELRERMLGRAEDILEELEEE 95          
BLAST of EWM21932.1 vs. NCBI_GenBank
Match: gi|585102282|gb|EWM21935.1| (hypothetical protein Naga_100220g11 [Nannochloropsis gaditana])

HSP 1 Score: 80.1073 bits (196), Expect = 1.452e-12
Identity = 48/184 (26.09%), Postives = 95/184 (51.63%), Query Frame = 0
Query:  162 HLPEGQTDESEHTQQKASADLKELRRATRSTGRGIEDWIKIPVAATVRVPSGDLEKLDGMVYVSTDTGAFFRQQGGVYFETMWKGSVHKYFIPDSELPMVSEDHFLFKEERARIEEDRLKRLSQAKHMLELGCTNEEVTFDIE----KKAADRTLESRKEELRERMLGRAEDILEELEEEVAIT 341
            ++PE    +S  +    S + K LRR+TR     I+DWIKIPV   +       E ++G V++S+++G  +++ G    E  + GS + Y +P+  LPM++ DH  +  E   + + + K++  +    +L   N +   ++E    +K  +R L + K + ++ +L   +D+ +   E +A+T
Sbjct:   74 NMPETGVKDSGRSDVCQSMNDKNLRRSTRCAHDKIDDWIKIPVEVPISDAGNRSELIEGSVFLSSESGQLYKKSGKACVEAAFNGSYYTYLVPEESLPMLTVDHPHYIAEVDMMNKSKEKQIEASAIFSKLLQVNVDAHHEMEMLMLEKEYERELLTLKNQSQDAILQVMKDVQDLGHESIAVT 257          
BLAST of EWM21932.1 vs. NCBI_GenBank
Match: gi|553182018|ref|XP_005853664.1| (hypothetical protein NGA_0106602, partial [Nannochloropsis gaditana CCMP526] >gi|422295397|gb|EKU22696.1| hypothetical protein NGA_0106602, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 60.8474 bits (146), Expect = 9.919e-9
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0
Query:   79 MVANAQRVESIFLRHYRENILDKIQGEKV 107
            MVANAQRVESIFLRHYRENILDKIQGEKV
Sbjct:    1 MVANAQRVESIFLRHYRENILDKIQGEKV 29          
The following BLAST results are available for this feature:
BLAST of EWM21932.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585102279|gb|EWM21932.1|0.000e+0100.00hypothetical protein Naga_100220g3 [Nannochloropsi... [more]
gi|553182016|ref|XP_005853663.1|1.930e-56100.00hypothetical protein NGA_0106502, partial [Nannoch... [more]
gi|585102282|gb|EWM21935.1|1.452e-1226.09hypothetical protein Naga_100220g11 [Nannochlorops... [more]
gi|553182018|ref|XP_005853664.1|9.919e-9100.00hypothetical protein NGA_0106602, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8773rna8773Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications