EWM21929.1, cds8734 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21929.1 vs. NCBI_GenBank
Match: gi|585102276|gb|EWM21929.1| (chromatin remodeling complex subunit, partial [Nannochloropsis gaditana]) HSP 1 Score: 817.765 bits (2111), Expect = 0.000e+0 Identity = 408/408 (100.00%), Postives = 408/408 (100.00%), Query Frame = 0
Query: 1 MADHSSIGSNRSRSNRPLEFTSHRHTQMAEGGMQISSLAPPHAPLSGSHHLKPEPATALSQGKDAHGVNSDTITAGSRMSRARRTPLPVQDVKREVCSASEGVSLTPVKDKDKSGWRGGHCSPSSSTSPQLHNGATKKPAKRTQHMCEDVVGGPGRGAGKDAEEDAASMSLDGGTDVGKRGKAGRSGGKPGRPRHYVLGEMKEEEEVEVGDMLFRRELLARRLESLSAGGAGVAGGGGGKSTVPGRGPDVHWDYLLKEMQWMSADFQQERASHLRKRKKCAKAVVGYFKSMGSREERQAREEQEKRRRLAARIGREVKSFWRKVNQVVAFKQKLEVEEGRKRAMDKHLGFLLGQTERYSTMVARNMVLGARGGGGGGGGGGGGRRRWRRWEGPLGRERRWRRRRRRRR 408
MADHSSIGSNRSRSNRPLEFTSHRHTQMAEGGMQISSLAPPHAPLSGSHHLKPEPATALSQGKDAHGVNSDTITAGSRMSRARRTPLPVQDVKREVCSASEGVSLTPVKDKDKSGWRGGHCSPSSSTSPQLHNGATKKPAKRTQHMCEDVVGGPGRGAGKDAEEDAASMSLDGGTDVGKRGKAGRSGGKPGRPRHYVLGEMKEEEEVEVGDMLFRRELLARRLESLSAGGAGVAGGGGGKSTVPGRGPDVHWDYLLKEMQWMSADFQQERASHLRKRKKCAKAVVGYFKSMGSREERQAREEQEKRRRLAARIGREVKSFWRKVNQVVAFKQKLEVEEGRKRAMDKHLGFLLGQTERYSTMVARNMVLGARGGGGGGGGGGGGRRRWRRWEGPLGRERRWRRRRRRRR
Sbjct: 1 MADHSSIGSNRSRSNRPLEFTSHRHTQMAEGGMQISSLAPPHAPLSGSHHLKPEPATALSQGKDAHGVNSDTITAGSRMSRARRTPLPVQDVKREVCSASEGVSLTPVKDKDKSGWRGGHCSPSSSTSPQLHNGATKKPAKRTQHMCEDVVGGPGRGAGKDAEEDAASMSLDGGTDVGKRGKAGRSGGKPGRPRHYVLGEMKEEEEVEVGDMLFRRELLARRLESLSAGGAGVAGGGGGKSTVPGRGPDVHWDYLLKEMQWMSADFQQERASHLRKRKKCAKAVVGYFKSMGSREERQAREEQEKRRRLAARIGREVKSFWRKVNQVVAFKQKLEVEEGRKRAMDKHLGFLLGQTERYSTMVARNMVLGARGGGGGGGGGGGGRRRWRRWEGPLGRERRWRRRRRRRR 408
BLAST of EWM21929.1 vs. NCBI_GenBank
Match: gi|298709602|emb|CBJ49249.1| (similar to E1a binding protein P400 (Partial), partial [Ectocarpus siliculosus]) HSP 1 Score: 137.887 bits (346), Expect = 1.533e-31 Identity = 69/150 (46.00%), Postives = 106/150 (70.67%), Query Frame = 0
Query: 215 RRELLARRLESLSAGGAGVAGGGGGKSTVPG---RGPDVHWDYLLKEMQWMSADFQQERASHLRKRKKCAKAVVGYFKSMGSREERQAREEQEKRRRLAARIGREVKSFWRKVNQVVAFKQKLEVEEGRKRAMDKHLGFLLGQTERYSTM 361
+R LA+RL++++ GG + V G R + HWD+LLKEM WM+ DFQQER H+ RKK A++V+ +F+ +R+ ++A+EEQ RR A+++ R+V++FW K+N+V+A+KQ+LE +E R++AMDKHL FL+ QTERYS +
Sbjct: 194 KRAALAKRLQAIT--------GGKERQDVLGQALREKNRHWDFLLKEMMWMADDFQQERKRHMSARKKQARSVLLHFRGHEARKAKKAKEEQLALRRGASKVARDVRAFWGKLNKVIAYKQRLEADECRRKAMDKHLVFLVKQTERYSPL 335
BLAST of EWM21929.1 vs. NCBI_GenBank
Match: gi|620986041|ref|XP_007662534.1| (PREDICTED: helicase SRCAP-like, partial [Ornithorhynchus anatinus]) HSP 1 Score: 118.242 bits (295), Expect = 1.226e-27 Identity = 59/135 (43.70%), Postives = 83/135 (61.48%), Query Frame = 0
Query: 248 PDVHWDYLLKEMQWMSADFQQERASHLRKRKKCAKAVVGYFKSMGSREERQAREEQEKRRRLAARIGREVKSFWRKVNQVVAFKQKLEVEEGRKRAMDKHLGFLLGQTERYSTMVARNMVLGARGGGGGGGGGGG 382
P HWDYL +EMQW+SADF QER +K + V+ + + +EER REEQ K RR+AA I +EVK FW V +VV FKQ+ +EE RK+A+D L F++GQTE+YS ++++++ G G
Sbjct: 31 PKGHWDYLCEEMQWLSADFAQERRWKRGVARKVVRMVIRHHEEQRQKEERAKREEQAKLRRIAASIAKEVKQFWSNVEKVVQFKQQSRLEEKRKKALDLQLDFIVGQTEKYSDLLSQSLNQPPAPAPSKAGSSPG 165
BLAST of EWM21929.1 vs. NCBI_GenBank
Match: gi|1059081447|ref|XP_017729959.1| (PREDICTED: helicase SRCAP isoform X1 [Rhinopithecus bieti] >gi|1059081449|ref|XP_017730023.1| PREDICTED: helicase SRCAP isoform X1 [Rhinopithecus bieti] >gi|1059081451|ref|XP_017730100.1| PREDICTED: helicase SRCAP isoform X1 [Rhinopithecus bieti] >gi|1059081453|ref|XP_017730164.1| PREDICTED: helicase SRCAP isoform X1 [Rhinopithecus bieti]) HSP 1 Score: 123.25 bits (308), Expect = 1.598e-26 Identity = 54/116 (46.55%), Postives = 81/116 (69.83%), Query Frame = 0
Query: 251 HWDYLLKEMQWMSADFQQERASHLRKRKKCAKAVVGYFKSMGSREERQAREEQEKRRRLAARIGREVKSFWRKVNQVVAFKQKLEVEEGRKRAMDKHLGFLLGQTERYSTMVARNM 366
HWDYL +EMQW+SADF QER +K + V+ + + +EER REEQ K RR+A+ I ++V+ FW V +VV FKQ+ +EE RK+A+D HL F++GQTE+YS ++++++
Sbjct: 136 HWDYLCEEMQWLSADFAQERRWKRGVARKVVRMVIRHHEEQRQKEERARREEQAKLRRIASTIAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQSL 251
BLAST of EWM21929.1 vs. NCBI_GenBank
Match: gi|724818050|ref|XP_010360523.1| (PREDICTED: helicase SRCAP isoform X1 [Rhinopithecus roxellana] >gi|724818053|ref|XP_010360525.1| PREDICTED: helicase SRCAP isoform X1 [Rhinopithecus roxellana] >gi|724818056|ref|XP_010360526.1| PREDICTED: helicase SRCAP isoform X1 [Rhinopithecus roxellana]) HSP 1 Score: 123.25 bits (308), Expect = 1.613e-26 Identity = 54/116 (46.55%), Postives = 81/116 (69.83%), Query Frame = 0
Query: 251 HWDYLLKEMQWMSADFQQERASHLRKRKKCAKAVVGYFKSMGSREERQAREEQEKRRRLAARIGREVKSFWRKVNQVVAFKQKLEVEEGRKRAMDKHLGFLLGQTERYSTMVARNM 366
HWDYL +EMQW+SADF QER +K + V+ + + +EER REEQ K RR+A+ I ++V+ FW V +VV FKQ+ +EE RK+A+D HL F++GQTE+YS ++++++
Sbjct: 136 HWDYLCEEMQWLSADFAQERRWKRGVARKVVRMVIRHHEEQRQKEERARREEQAKLRRIASTIAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQSL 251
BLAST of EWM21929.1 vs. NCBI_GenBank
Match: gi|1059081455|ref|XP_017730239.1| (PREDICTED: helicase SRCAP isoform X2 [Rhinopithecus bieti]) HSP 1 Score: 122.865 bits (307), Expect = 1.767e-26 Identity = 54/116 (46.55%), Postives = 81/116 (69.83%), Query Frame = 0
Query: 251 HWDYLLKEMQWMSADFQQERASHLRKRKKCAKAVVGYFKSMGSREERQAREEQEKRRRLAARIGREVKSFWRKVNQVVAFKQKLEVEEGRKRAMDKHLGFLLGQTERYSTMVARNM 366
HWDYL +EMQW+SADF QER +K + V+ + + +EER REEQ K RR+A+ I ++V+ FW V +VV FKQ+ +EE RK+A+D HL F++GQTE+YS ++++++
Sbjct: 136 HWDYLCEEMQWLSADFAQERRWKRGVARKVVRMVIRHHEEQRQKEERARREEQAKLRRIASTIAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQSL 251
BLAST of EWM21929.1 vs. NCBI_GenBank
Match: gi|724818059|ref|XP_010360527.1| (PREDICTED: helicase SRCAP isoform X2 [Rhinopithecus roxellana]) HSP 1 Score: 122.865 bits (307), Expect = 1.783e-26 Identity = 54/116 (46.55%), Postives = 81/116 (69.83%), Query Frame = 0
Query: 251 HWDYLLKEMQWMSADFQQERASHLRKRKKCAKAVVGYFKSMGSREERQAREEQEKRRRLAARIGREVKSFWRKVNQVVAFKQKLEVEEGRKRAMDKHLGFLLGQTERYSTMVARNM 366
HWDYL +EMQW+SADF QER +K + V+ + + +EER REEQ K RR+A+ I ++V+ FW V +VV FKQ+ +EE RK+A+D HL F++GQTE+YS ++++++
Sbjct: 136 HWDYLCEEMQWLSADFAQERRWKRGVARKVVRMVIRHHEEQRQKEERARREEQAKLRRIASTIAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQSL 251
BLAST of EWM21929.1 vs. NCBI_GenBank
Match: gi|1012280909|ref|XP_015988320.1| (PREDICTED: helicase SRCAP isoform X5 [Rousettus aegyptiacus] >gi|1012280911|ref|XP_015988321.1| PREDICTED: helicase SRCAP isoform X5 [Rousettus aegyptiacus]) HSP 1 Score: 122.479 bits (306), Expect = 2.615e-26 Identity = 80/228 (35.09%), Postives = 118/228 (51.75%), Query Frame = 0
Query: 144 QHMCED--VVGGPGRGAGKDAEEDAASMSLDGGTDVGKRGKAGRSGGKPGRPRHYVLGEM-KEEEEVEVGDMLFRRELL--ARRLESLSAGGAGVAGGGGGKSTVPGRGPDVHWDYLLKEMQWMSADFQQERASHLRKRKKCAKAVVGYFKSMGSREERQAREEQEKRRRLAARIGREVKSFWRKVNQVVAFKQKLEVEEGRKRAMDKHLGFLLGQTERYSTMVARNM 366
QH+ +D + G PG G + +SL TD+ RG H + E K E E+E R+E +RL K P R P HWDYL +EMQW+SADF QER +K + V+ + + +EER REEQ K RR+A+ + ++V+ FW V +VV FKQ+ +EE RK+A+D HL F++GQTE+YS ++++++
Sbjct: 49 QHIAQDSSLDGPPGPPDGATVPLEG--LSLPQATDLANRGPKWEKS-------HAEIAEQAKHEAEIETRIAELRKEGFWSLKRLP---------------KVPEPPR-PKGHWDYLCEEMQWLSADFAQERRWKRGVARKVVRMVIRHHEEQRQKEERARREEQAKLRRIASTMAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQSL 251
BLAST of EWM21929.1 vs. NCBI_GenBank
Match: gi|1124028276|ref|XP_019572783.1| (PREDICTED: helicase SRCAP isoform X2 [Rhinolophus sinicus]) HSP 1 Score: 122.479 bits (306), Expect = 2.772e-26 Identity = 80/228 (35.09%), Postives = 118/228 (51.75%), Query Frame = 0
Query: 144 QHMCED--VVGGPGRGAGKDAEEDAASMSLDGGTDVGKRGKAGRSGGKPGRPRHYVLGEM-KEEEEVEVGDMLFRRELL--ARRLESLSAGGAGVAGGGGGKSTVPGRGPDVHWDYLLKEMQWMSADFQQERASHLRKRKKCAKAVVGYFKSMGSREERQAREEQEKRRRLAARIGREVKSFWRKVNQVVAFKQKLEVEEGRKRAMDKHLGFLLGQTERYSTMVARNM 366
QH+ +D + G PG G A + +SL D+ RG H + E K E E+E R+E +RL K P R P HWDYL +EMQW+SADF QER +K + V+ + + +EER REEQ K RR+A+ + ++V+ FW V +VV FKQ+ +EE RK+A+D HL F++GQTE+YS ++++++
Sbjct: 152 QHIAQDSSLDGPPGPPDGATAPLEG--LSLPQAADLANRGPKWEKS-------HAEIAEQAKHEAEIETRIAELRKEGFWSLKRLP---------------KVPEPPR-PKGHWDYLCEEMQWLSADFAQERRWKRGVARKVVRMVIRHHEEQRQKEERARREEQAKLRRIASTMAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQSL 354
BLAST of EWM21929.1 vs. NCBI_GenBank
Match: gi|1124028274|ref|XP_019572782.1| (PREDICTED: helicase SRCAP isoform X1 [Rhinolophus sinicus]) HSP 1 Score: 122.479 bits (306), Expect = 2.798e-26 Identity = 80/228 (35.09%), Postives = 118/228 (51.75%), Query Frame = 0
Query: 144 QHMCED--VVGGPGRGAGKDAEEDAASMSLDGGTDVGKRGKAGRSGGKPGRPRHYVLGEM-KEEEEVEVGDMLFRRELL--ARRLESLSAGGAGVAGGGGGKSTVPGRGPDVHWDYLLKEMQWMSADFQQERASHLRKRKKCAKAVVGYFKSMGSREERQAREEQEKRRRLAARIGREVKSFWRKVNQVVAFKQKLEVEEGRKRAMDKHLGFLLGQTERYSTMVARNM 366
QH+ +D + G PG G A + +SL D+ RG H + E K E E+E R+E +RL K P R P HWDYL +EMQW+SADF QER +K + V+ + + +EER REEQ K RR+A+ + ++V+ FW V +VV FKQ+ +EE RK+A+D HL F++GQTE+YS ++++++
Sbjct: 152 QHIAQDSSLDGPPGPPDGATAPLEG--LSLPQAADLANRGPKWEKS-------HAEIAEQAKHEAEIETRIAELRKEGFWSLKRLP---------------KVPEPPR-PKGHWDYLCEEMQWLSADFAQERRWKRGVARKVVRMVIRHHEEQRQKEERARREEQAKLRRIASTMAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQSL 354 The following BLAST results are available for this feature:
BLAST of EWM21929.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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