EWM21929.1, cds8734 (CDS) Nannochloropsis gaditana

Overview
NameEWM21929.1
Unique Namecds8734
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:112590..113814 -

Link to JBrowse

Properties
Property NameValue
Start range112590
Start range.
Protein idEWM21929.1
Productchromatin remodeling complex subunit
Partialtrue
Orig transcript idgnl|cribi|Naga_100220g13.7204.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:112590..113814 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR014012HSA_dom
Homology
BLAST of EWM21929.1 vs. NCBI_GenBank
Match: gi|585102276|gb|EWM21929.1| (chromatin remodeling complex subunit, partial [Nannochloropsis gaditana])

HSP 1 Score: 817.765 bits (2111), Expect = 0.000e+0
Identity = 408/408 (100.00%), Postives = 408/408 (100.00%), Query Frame = 0
Query:    1 MADHSSIGSNRSRSNRPLEFTSHRHTQMAEGGMQISSLAPPHAPLSGSHHLKPEPATALSQGKDAHGVNSDTITAGSRMSRARRTPLPVQDVKREVCSASEGVSLTPVKDKDKSGWRGGHCSPSSSTSPQLHNGATKKPAKRTQHMCEDVVGGPGRGAGKDAEEDAASMSLDGGTDVGKRGKAGRSGGKPGRPRHYVLGEMKEEEEVEVGDMLFRRELLARRLESLSAGGAGVAGGGGGKSTVPGRGPDVHWDYLLKEMQWMSADFQQERASHLRKRKKCAKAVVGYFKSMGSREERQAREEQEKRRRLAARIGREVKSFWRKVNQVVAFKQKLEVEEGRKRAMDKHLGFLLGQTERYSTMVARNMVLGARGGGGGGGGGGGGRRRWRRWEGPLGRERRWRRRRRRRR 408
            MADHSSIGSNRSRSNRPLEFTSHRHTQMAEGGMQISSLAPPHAPLSGSHHLKPEPATALSQGKDAHGVNSDTITAGSRMSRARRTPLPVQDVKREVCSASEGVSLTPVKDKDKSGWRGGHCSPSSSTSPQLHNGATKKPAKRTQHMCEDVVGGPGRGAGKDAEEDAASMSLDGGTDVGKRGKAGRSGGKPGRPRHYVLGEMKEEEEVEVGDMLFRRELLARRLESLSAGGAGVAGGGGGKSTVPGRGPDVHWDYLLKEMQWMSADFQQERASHLRKRKKCAKAVVGYFKSMGSREERQAREEQEKRRRLAARIGREVKSFWRKVNQVVAFKQKLEVEEGRKRAMDKHLGFLLGQTERYSTMVARNMVLGARGGGGGGGGGGGGRRRWRRWEGPLGRERRWRRRRRRRR
Sbjct:    1 MADHSSIGSNRSRSNRPLEFTSHRHTQMAEGGMQISSLAPPHAPLSGSHHLKPEPATALSQGKDAHGVNSDTITAGSRMSRARRTPLPVQDVKREVCSASEGVSLTPVKDKDKSGWRGGHCSPSSSTSPQLHNGATKKPAKRTQHMCEDVVGGPGRGAGKDAEEDAASMSLDGGTDVGKRGKAGRSGGKPGRPRHYVLGEMKEEEEVEVGDMLFRRELLARRLESLSAGGAGVAGGGGGKSTVPGRGPDVHWDYLLKEMQWMSADFQQERASHLRKRKKCAKAVVGYFKSMGSREERQAREEQEKRRRLAARIGREVKSFWRKVNQVVAFKQKLEVEEGRKRAMDKHLGFLLGQTERYSTMVARNMVLGARGGGGGGGGGGGGRRRWRRWEGPLGRERRWRRRRRRRR 408          
BLAST of EWM21929.1 vs. NCBI_GenBank
Match: gi|298709602|emb|CBJ49249.1| (similar to E1a binding protein P400 (Partial), partial [Ectocarpus siliculosus])

HSP 1 Score: 137.887 bits (346), Expect = 1.533e-31
Identity = 69/150 (46.00%), Postives = 106/150 (70.67%), Query Frame = 0
Query:  215 RRELLARRLESLSAGGAGVAGGGGGKSTVPG---RGPDVHWDYLLKEMQWMSADFQQERASHLRKRKKCAKAVVGYFKSMGSREERQAREEQEKRRRLAARIGREVKSFWRKVNQVVAFKQKLEVEEGRKRAMDKHLGFLLGQTERYSTM 361
            +R  LA+RL++++        GG  +  V G   R  + HWD+LLKEM WM+ DFQQER  H+  RKK A++V+ +F+   +R+ ++A+EEQ   RR A+++ R+V++FW K+N+V+A+KQ+LE +E R++AMDKHL FL+ QTERYS +
Sbjct:  194 KRAALAKRLQAIT--------GGKERQDVLGQALREKNRHWDFLLKEMMWMADDFQQERKRHMSARKKQARSVLLHFRGHEARKAKKAKEEQLALRRGASKVARDVRAFWGKLNKVIAYKQRLEADECRRKAMDKHLVFLVKQTERYSPL 335          
BLAST of EWM21929.1 vs. NCBI_GenBank
Match: gi|620986041|ref|XP_007662534.1| (PREDICTED: helicase SRCAP-like, partial [Ornithorhynchus anatinus])

HSP 1 Score: 118.242 bits (295), Expect = 1.226e-27
Identity = 59/135 (43.70%), Postives = 83/135 (61.48%), Query Frame = 0
Query:  248 PDVHWDYLLKEMQWMSADFQQERASHLRKRKKCAKAVVGYFKSMGSREERQAREEQEKRRRLAARIGREVKSFWRKVNQVVAFKQKLEVEEGRKRAMDKHLGFLLGQTERYSTMVARNMVLGARGGGGGGGGGGG 382
            P  HWDYL +EMQW+SADF QER       +K  + V+ + +    +EER  REEQ K RR+AA I +EVK FW  V +VV FKQ+  +EE RK+A+D  L F++GQTE+YS ++++++           G   G
Sbjct:   31 PKGHWDYLCEEMQWLSADFAQERRWKRGVARKVVRMVIRHHEEQRQKEERAKREEQAKLRRIAASIAKEVKQFWSNVEKVVQFKQQSRLEEKRKKALDLQLDFIVGQTEKYSDLLSQSLNQPPAPAPSKAGSSPG 165          
BLAST of EWM21929.1 vs. NCBI_GenBank
Match: gi|1059081447|ref|XP_017729959.1| (PREDICTED: helicase SRCAP isoform X1 [Rhinopithecus bieti] >gi|1059081449|ref|XP_017730023.1| PREDICTED: helicase SRCAP isoform X1 [Rhinopithecus bieti] >gi|1059081451|ref|XP_017730100.1| PREDICTED: helicase SRCAP isoform X1 [Rhinopithecus bieti] >gi|1059081453|ref|XP_017730164.1| PREDICTED: helicase SRCAP isoform X1 [Rhinopithecus bieti])

HSP 1 Score: 123.25 bits (308), Expect = 1.598e-26
Identity = 54/116 (46.55%), Postives = 81/116 (69.83%), Query Frame = 0
Query:  251 HWDYLLKEMQWMSADFQQERASHLRKRKKCAKAVVGYFKSMGSREERQAREEQEKRRRLAARIGREVKSFWRKVNQVVAFKQKLEVEEGRKRAMDKHLGFLLGQTERYSTMVARNM 366
            HWDYL +EMQW+SADF QER       +K  + V+ + +    +EER  REEQ K RR+A+ I ++V+ FW  V +VV FKQ+  +EE RK+A+D HL F++GQTE+YS ++++++
Sbjct:  136 HWDYLCEEMQWLSADFAQERRWKRGVARKVVRMVIRHHEEQRQKEERARREEQAKLRRIASTIAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQSL 251          
BLAST of EWM21929.1 vs. NCBI_GenBank
Match: gi|724818050|ref|XP_010360523.1| (PREDICTED: helicase SRCAP isoform X1 [Rhinopithecus roxellana] >gi|724818053|ref|XP_010360525.1| PREDICTED: helicase SRCAP isoform X1 [Rhinopithecus roxellana] >gi|724818056|ref|XP_010360526.1| PREDICTED: helicase SRCAP isoform X1 [Rhinopithecus roxellana])

HSP 1 Score: 123.25 bits (308), Expect = 1.613e-26
Identity = 54/116 (46.55%), Postives = 81/116 (69.83%), Query Frame = 0
Query:  251 HWDYLLKEMQWMSADFQQERASHLRKRKKCAKAVVGYFKSMGSREERQAREEQEKRRRLAARIGREVKSFWRKVNQVVAFKQKLEVEEGRKRAMDKHLGFLLGQTERYSTMVARNM 366
            HWDYL +EMQW+SADF QER       +K  + V+ + +    +EER  REEQ K RR+A+ I ++V+ FW  V +VV FKQ+  +EE RK+A+D HL F++GQTE+YS ++++++
Sbjct:  136 HWDYLCEEMQWLSADFAQERRWKRGVARKVVRMVIRHHEEQRQKEERARREEQAKLRRIASTIAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQSL 251          
BLAST of EWM21929.1 vs. NCBI_GenBank
Match: gi|1059081455|ref|XP_017730239.1| (PREDICTED: helicase SRCAP isoform X2 [Rhinopithecus bieti])

HSP 1 Score: 122.865 bits (307), Expect = 1.767e-26
Identity = 54/116 (46.55%), Postives = 81/116 (69.83%), Query Frame = 0
Query:  251 HWDYLLKEMQWMSADFQQERASHLRKRKKCAKAVVGYFKSMGSREERQAREEQEKRRRLAARIGREVKSFWRKVNQVVAFKQKLEVEEGRKRAMDKHLGFLLGQTERYSTMVARNM 366
            HWDYL +EMQW+SADF QER       +K  + V+ + +    +EER  REEQ K RR+A+ I ++V+ FW  V +VV FKQ+  +EE RK+A+D HL F++GQTE+YS ++++++
Sbjct:  136 HWDYLCEEMQWLSADFAQERRWKRGVARKVVRMVIRHHEEQRQKEERARREEQAKLRRIASTIAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQSL 251          
BLAST of EWM21929.1 vs. NCBI_GenBank
Match: gi|724818059|ref|XP_010360527.1| (PREDICTED: helicase SRCAP isoform X2 [Rhinopithecus roxellana])

HSP 1 Score: 122.865 bits (307), Expect = 1.783e-26
Identity = 54/116 (46.55%), Postives = 81/116 (69.83%), Query Frame = 0
Query:  251 HWDYLLKEMQWMSADFQQERASHLRKRKKCAKAVVGYFKSMGSREERQAREEQEKRRRLAARIGREVKSFWRKVNQVVAFKQKLEVEEGRKRAMDKHLGFLLGQTERYSTMVARNM 366
            HWDYL +EMQW+SADF QER       +K  + V+ + +    +EER  REEQ K RR+A+ I ++V+ FW  V +VV FKQ+  +EE RK+A+D HL F++GQTE+YS ++++++
Sbjct:  136 HWDYLCEEMQWLSADFAQERRWKRGVARKVVRMVIRHHEEQRQKEERARREEQAKLRRIASTIAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQSL 251          
BLAST of EWM21929.1 vs. NCBI_GenBank
Match: gi|1012280909|ref|XP_015988320.1| (PREDICTED: helicase SRCAP isoform X5 [Rousettus aegyptiacus] >gi|1012280911|ref|XP_015988321.1| PREDICTED: helicase SRCAP isoform X5 [Rousettus aegyptiacus])

HSP 1 Score: 122.479 bits (306), Expect = 2.615e-26
Identity = 80/228 (35.09%), Postives = 118/228 (51.75%), Query Frame = 0
Query:  144 QHMCED--VVGGPGRGAGKDAEEDAASMSLDGGTDVGKRGKAGRSGGKPGRPRHYVLGEM-KEEEEVEVGDMLFRRELL--ARRLESLSAGGAGVAGGGGGKSTVPGRGPDVHWDYLLKEMQWMSADFQQERASHLRKRKKCAKAVVGYFKSMGSREERQAREEQEKRRRLAARIGREVKSFWRKVNQVVAFKQKLEVEEGRKRAMDKHLGFLLGQTERYSTMVARNM 366
            QH+ +D  + G PG   G     +   +SL   TD+  RG             H  + E  K E E+E      R+E     +RL                K   P R P  HWDYL +EMQW+SADF QER       +K  + V+ + +    +EER  REEQ K RR+A+ + ++V+ FW  V +VV FKQ+  +EE RK+A+D HL F++GQTE+YS ++++++
Sbjct:   49 QHIAQDSSLDGPPGPPDGATVPLEG--LSLPQATDLANRGPKWEKS-------HAEIAEQAKHEAEIETRIAELRKEGFWSLKRLP---------------KVPEPPR-PKGHWDYLCEEMQWLSADFAQERRWKRGVARKVVRMVIRHHEEQRQKEERARREEQAKLRRIASTMAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQSL 251          
BLAST of EWM21929.1 vs. NCBI_GenBank
Match: gi|1124028276|ref|XP_019572783.1| (PREDICTED: helicase SRCAP isoform X2 [Rhinolophus sinicus])

HSP 1 Score: 122.479 bits (306), Expect = 2.772e-26
Identity = 80/228 (35.09%), Postives = 118/228 (51.75%), Query Frame = 0
Query:  144 QHMCED--VVGGPGRGAGKDAEEDAASMSLDGGTDVGKRGKAGRSGGKPGRPRHYVLGEM-KEEEEVEVGDMLFRRELL--ARRLESLSAGGAGVAGGGGGKSTVPGRGPDVHWDYLLKEMQWMSADFQQERASHLRKRKKCAKAVVGYFKSMGSREERQAREEQEKRRRLAARIGREVKSFWRKVNQVVAFKQKLEVEEGRKRAMDKHLGFLLGQTERYSTMVARNM 366
            QH+ +D  + G PG   G  A  +   +SL    D+  RG             H  + E  K E E+E      R+E     +RL                K   P R P  HWDYL +EMQW+SADF QER       +K  + V+ + +    +EER  REEQ K RR+A+ + ++V+ FW  V +VV FKQ+  +EE RK+A+D HL F++GQTE+YS ++++++
Sbjct:  152 QHIAQDSSLDGPPGPPDGATAPLEG--LSLPQAADLANRGPKWEKS-------HAEIAEQAKHEAEIETRIAELRKEGFWSLKRLP---------------KVPEPPR-PKGHWDYLCEEMQWLSADFAQERRWKRGVARKVVRMVIRHHEEQRQKEERARREEQAKLRRIASTMAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQSL 354          
BLAST of EWM21929.1 vs. NCBI_GenBank
Match: gi|1124028274|ref|XP_019572782.1| (PREDICTED: helicase SRCAP isoform X1 [Rhinolophus sinicus])

HSP 1 Score: 122.479 bits (306), Expect = 2.798e-26
Identity = 80/228 (35.09%), Postives = 118/228 (51.75%), Query Frame = 0
Query:  144 QHMCED--VVGGPGRGAGKDAEEDAASMSLDGGTDVGKRGKAGRSGGKPGRPRHYVLGEM-KEEEEVEVGDMLFRRELL--ARRLESLSAGGAGVAGGGGGKSTVPGRGPDVHWDYLLKEMQWMSADFQQERASHLRKRKKCAKAVVGYFKSMGSREERQAREEQEKRRRLAARIGREVKSFWRKVNQVVAFKQKLEVEEGRKRAMDKHLGFLLGQTERYSTMVARNM 366
            QH+ +D  + G PG   G  A  +   +SL    D+  RG             H  + E  K E E+E      R+E     +RL                K   P R P  HWDYL +EMQW+SADF QER       +K  + V+ + +    +EER  REEQ K RR+A+ + ++V+ FW  V +VV FKQ+  +EE RK+A+D HL F++GQTE+YS ++++++
Sbjct:  152 QHIAQDSSLDGPPGPPDGATAPLEG--LSLPQAADLANRGPKWEKS-------HAEIAEQAKHEAEIETRIAELRKEGFWSLKRLP---------------KVPEPPR-PKGHWDYLCEEMQWLSADFAQERRWKRGVARKVVRMVIRHHEEQRQKEERARREEQAKLRRIASTMAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQSL 354          
The following BLAST results are available for this feature:
BLAST of EWM21929.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102276|gb|EWM21929.1|0.000e+0100.00chromatin remodeling complex subunit, partial [Nan... [more]
gi|298709602|emb|CBJ49249.1|1.533e-3146.00similar to E1a binding protein P400 (Partial), par... [more]
gi|620986041|ref|XP_007662534.1|1.226e-2743.70PREDICTED: helicase SRCAP-like, partial [Ornithorh... [more]
gi|1059081447|ref|XP_017729959.1|1.598e-2646.55PREDICTED: helicase SRCAP isoform X1 [Rhinopithecu... [more]
gi|724818050|ref|XP_010360523.1|1.613e-2646.55PREDICTED: helicase SRCAP isoform X1 [Rhinopithecu... [more]
gi|1059081455|ref|XP_017730239.1|1.767e-2646.55PREDICTED: helicase SRCAP isoform X2 [Rhinopithecu... [more]
gi|724818059|ref|XP_010360527.1|1.783e-2646.55PREDICTED: helicase SRCAP isoform X2 [Rhinopithecu... [more]
gi|1012280909|ref|XP_015988320.1|2.615e-2635.09PREDICTED: helicase SRCAP isoform X5 [Rousettus ae... [more]
gi|1124028276|ref|XP_019572783.1|2.772e-2635.09PREDICTED: helicase SRCAP isoform X2 [Rhinolophus ... [more]
gi|1124028274|ref|XP_019572782.1|2.798e-2635.09PREDICTED: helicase SRCAP isoform X1 [Rhinolophus ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8764rna8764Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications