EWM21952.1, cds8722 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21952.1 vs. NCBI_GenBank
Match: gi|585102304|gb|EWM21952.1| (trna rrna methyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 928.317 bits (2398), Expect = 0.000e+0 Identity = 458/458 (100.00%), Postives = 458/458 (100.00%), Query Frame = 0
Query: 1 MRRPLLLPSLLVLVTSRTIRSIPGPPLAKPARGVALLSSASSLPHPFSTLAGTSRRIFISRARFDSLPGHRRAPLTESYFYRHEVHRRFVSKSVLFAASPSPSALPPASSLDPPLKNAWGQRIIPLNDLSLPPSSAVLDLTDDLLRRGIPELADIKEGLVFFQLQQPPHSGRDSARIRTGSSHRCAATREDAVVPARKAALDAALTSLDIDLQALSQEDQVTGSGSSALRSYFSFVQPRPHKQHAPVDNALEAAALRAANQIAFLVRAYRAEQAEFLRNHDEAMSRLQSFPRSMHPLVLILDNVRSAYNVGSLFRTAETALLQELITCGFTPHPPHEKLKKTACRSLENVPSRHFSTTLDAVRTMKEEGFVVFAMETTSRSQCYTHVAFPEKAALVLGNEVIGVDTAVLEECDGGIIEIPTFGQKNSLNVASAAPVVVFEVLRQWGTFDKAEGKVDKT 458
MRRPLLLPSLLVLVTSRTIRSIPGPPLAKPARGVALLSSASSLPHPFSTLAGTSRRIFISRARFDSLPGHRRAPLTESYFYRHEVHRRFVSKSVLFAASPSPSALPPASSLDPPLKNAWGQRIIPLNDLSLPPSSAVLDLTDDLLRRGIPELADIKEGLVFFQLQQPPHSGRDSARIRTGSSHRCAATREDAVVPARKAALDAALTSLDIDLQALSQEDQVTGSGSSALRSYFSFVQPRPHKQHAPVDNALEAAALRAANQIAFLVRAYRAEQAEFLRNHDEAMSRLQSFPRSMHPLVLILDNVRSAYNVGSLFRTAETALLQELITCGFTPHPPHEKLKKTACRSLENVPSRHFSTTLDAVRTMKEEGFVVFAMETTSRSQCYTHVAFPEKAALVLGNEVIGVDTAVLEECDGGIIEIPTFGQKNSLNVASAAPVVVFEVLRQWGTFDKAEGKVDKT
Sbjct: 1 MRRPLLLPSLLVLVTSRTIRSIPGPPLAKPARGVALLSSASSLPHPFSTLAGTSRRIFISRARFDSLPGHRRAPLTESYFYRHEVHRRFVSKSVLFAASPSPSALPPASSLDPPLKNAWGQRIIPLNDLSLPPSSAVLDLTDDLLRRGIPELADIKEGLVFFQLQQPPHSGRDSARIRTGSSHRCAATREDAVVPARKAALDAALTSLDIDLQALSQEDQVTGSGSSALRSYFSFVQPRPHKQHAPVDNALEAAALRAANQIAFLVRAYRAEQAEFLRNHDEAMSRLQSFPRSMHPLVLILDNVRSAYNVGSLFRTAETALLQELITCGFTPHPPHEKLKKTACRSLENVPSRHFSTTLDAVRTMKEEGFVVFAMETTSRSQCYTHVAFPEKAALVLGNEVIGVDTAVLEECDGGIIEIPTFGQKNSLNVASAAPVVVFEVLRQWGTFDKAEGKVDKT 458
BLAST of EWM21952.1 vs. NCBI_GenBank
Match: gi|553179868|ref|XP_005852777.1| (trna rrna methyltransferase [Nannochloropsis gaditana CCMP526] >gi|422295760|gb|EKU23059.1| trna rrna methyltransferase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 367.081 bits (941), Expect = 3.689e-124 Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0
Query: 284 MSRLQSFPRSMHPLVLILDNVRSAYNVGSLFRTAETALLQELITCGFTPHPPHEKLKKTACRSLENVPSRHFSTTLDAVRTMKEEGFVVFAMETTSRSQCYTHVAFPEKAALVLGNEVIGVDTAVLEECDGGIIEIPTFGQKNSLNVASAAPVVVFEVLRQWGTFDKAEGKVDKT 458
MSRLQSFPRSMHPLVLILDNVRSAYNVGSLFRTAETALLQELITCGFTPHPPHEKLKKTACRSLENVPSRHFSTTLDAVRTMKEEGFVVFAMETTSRSQCYTHVAFPEKAALVLGNEVIGVDTAVLEECDGGIIEIPTFGQKNSLNVASAAPVVVFEVLRQWGTFDKAEGKVDKT
Sbjct: 1 MSRLQSFPRSMHPLVLILDNVRSAYNVGSLFRTAETALLQELITCGFTPHPPHEKLKKTACRSLENVPSRHFSTTLDAVRTMKEEGFVVFAMETTSRSQCYTHVAFPEKAALVLGNEVIGVDTAVLEECDGGIIEIPTFGQKNSLNVASAAPVVVFEVLRQWGTFDKAEGKVDKT 175
BLAST of EWM21952.1 vs. NCBI_GenBank
Match: gi|873219347|emb|CEM37799.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 231.876 bits (590), Expect = 1.104e-67 Identity = 128/287 (44.60%), Postives = 170/287 (59.23%), Query Frame = 0
Query: 197 RKAALDAALTSLDIDLQALSQEDQV--------------------------TGSGSSALRSYFSFVQPRPHKQHAPVDNALEAAALRAANQIAFLVRAYRAEQAEFLRNHDEAMSRLQSFPRSMHPLVLILDNVRSAYNVGSLFRTAETALLQELITCGFTPHPPHEKLKKTACRSLENVPSRHFSTTLDAVRTMKEEGFVVFAMETTSRSQCYTHVAFPEKAALVLGNEVIGVDTAVLEECDGGIIEIPTFGQKNSLNVASAAPVVVFEVLRQWGTFDKAEGKVDK 457
RKAALD AL S D+ L+ E + G G SA R+Y+++V+P P K LE +A R A QIA LVRAY+ F RN D +L+ +PLV++LDNVRSA+NVGS+ RTAE ++ ++ CG TPHPPH KL KT+ + E++P H T ++AVR +KEEGF + +ETT RSQ + ++FP K A+V GNEV GV T VL D + EIP FG KNS+NVA+AA +VVFEVLRQW FD+ + V++
Sbjct: 148 RKAALDVALRSFDLSPPQLANESTMHTTRDAAASAASAAATAPAVDRCIDWDGFGMSAQRTYYTYVRPHPSKLAGLQREPLERSAWRTAAQIAGLVRAYQNSLNAFFRNQDSTRPKLRE-AGGRNPLVVVLDNVRSAHNVGSIIRTAEAGGVERVVVCGITPHPPHPKLDKTSLGAHEHIPVHHVGTCVEAVRQLKEEGFTIVVLETTDRSQPHVDISFPPKTAVVFGNEVSGVATDVLHLAD-VLCEIPMFGVKNSINVANAASIVVFEVLRQWRAFDRLKQTVNE 432
BLAST of EWM21952.1 vs. NCBI_GenBank
Match: gi|551661822|ref|XP_005833677.1| (hypothetical protein GUITHDRAFT_86637 [Guillardia theta CCMP2712] >gi|428177819|gb|EKX46697.1| hypothetical protein GUITHDRAFT_86637 [Guillardia theta CCMP2712]) HSP 1 Score: 228.024 bits (580), Expect = 2.351e-66 Identity = 121/250 (48.40%), Postives = 170/250 (68.00%), Query Frame = 0
Query: 197 RKAALDAALTSLDIDLQALSQEDQVTGSGSSALRSYFSFVQPRPHKQ-HAPVDNALEAAALRAANQIAFLVRAYRAEQAEFLRNHDEAMSRLQSFPRSMHPLVLILDNVRSAYNVGSLFRTAETALLQELITCGFTPHPPHEKLKKTACRSLENVPSRHFSTTLDAVRTMKEEGFVVFAMETTSRSQCYTHVAFPEKAALVLGNEVIGVDTAVLEECDGGIIEIPTFGQKNSLNVASAAPVVVFEVLRQW 445
R+ ALD L L +++ L T GS A ++Y+SFV PR Q H+P++ E A R A+QI FL R +RA AEFLR DEA + + +HP+VL+LDN+RSA+NVGS+ RTAETA +++++ CG TPHPP+ K+ KTA RS + V H +TL+AVR + + V+A+ETTS+S+ YT V F + AL++GNE++G+ VL+EC+ +IEIP +G KNS+NVA A PVV++EVLRQW
Sbjct: 172 RQVALDEKLKDLGVNISELLFSK--TFDGSPARKAYWSFVNPREGIQTHSPLE-PFENAVKRYASQILFLDRGHRARLAEFLRTGDEAKAEKVNSCTVIHPVVLVLDNLRSAHNVGSIIRTAETAGVEKVVACGITPHPPNGKVLKTALRSADYVEVEHEDSTLNAVRKLLSRNYSVYALETTSQSRAYTLVNFSKPCALIVGNELLGISPEVLQECN-QLIEIPMYGFKNSMNVACACPVVLYEVLRQW 417
BLAST of EWM21952.1 vs. NCBI_GenBank
Match: gi|1210528759|dbj|GAX12629.1| (tRNA (guanosine-2'-O-)-methyltransferase [Fistulifera solaris]) HSP 1 Score: 200.29 bits (508), Expect = 9.369e-57 Identity = 120/278 (43.17%), Postives = 167/278 (60.07%), Query Frame = 0
Query: 193 VVPARKAALDAALTSLDIDLQALSQ------EDQVTGS----GSSALRSYFSFVQPRPHKQHAPVDNALEAAALRAANQIAFLVRAYRAEQAEFLRNHDEAMSRLQSFPRSMHPLVLILDNVRSAYNVGSLFRTAETALLQELITCGFTPHPP---HEKLKKTACRSLENVPSRHFSTTLDAVRTMKEE--GFVVFAMETTSRSQCYTHVAFPEKA-ALVLGNEVIGVDTAVLEECDGGIIEIPTFGQKNSLNVASAAPVVVFEVLRQWGTFDKAEGK 454
+ R+ L +L L+ID Q L Q ED G G SA+R+Y SF+ +A AAA R A QI FL+ +++ QAEF+R+HD Q R P++L+LDNVRSA+NVGS+FRTA+ + ++T G TPHP EKL K+A + VPS HF+TT A+ ++ E + + METT RSQ Y++ ++P L+LGNEV GVDT V+ + D I+EIP +G KNSLN+A+ APVV++EVLRQW ++ K EG+
Sbjct: 59 IFDERRNRLWTSLQELEIDAQELDQAAISSLEDPTMGYDNRYGKSAIRTYRSFLFSTKQPTSFSTISAT-AAANRCARQIQFLLNRHKSHQAEFVRHHDTP----QQSSRKTFPIILLLDNVRSAFNVGSIFRTADACGVSLVVTVGITPHPEGSGQEKLNKSALGAERLVPSVHFATTRQALEFLRNEKSDYQIIGMETTERSQLYSNYSYPASGVVLLLGNEVTGVDTDVMNDLD-AIVEIPMYGAKNSLNIAACAPVVLYEVLRQW-SWSKCEGE 329
BLAST of EWM21952.1 vs. NCBI_GenBank
Match: gi|1210513399|dbj|GAX27796.1| (tRNA (guanosine-2'-O-)-methyltransferase [Fistulifera solaris]) HSP 1 Score: 198.749 bits (504), Expect = 3.761e-56 Identity = 118/271 (43.54%), Postives = 165/271 (60.89%), Query Frame = 0
Query: 193 VVPARKAALDAALTSLDIDLQALSQ------EDQVTGS----GSSALRSYFSFVQPRPHKQHAPVDN-ALEAAALRAANQIAFLVRAYRAEQAEFLRNHDEAMSRLQSFPRSMHPLVLILDNVRSAYNVGSLFRTAETALLQELITCGFTPHP---PHEKLKKTACRSLENVPSRHFSTTLDAVRTMKEE--GFVVFAMETTSRSQCYTHVAFPEKA-ALVLGNEVIGVDTAVLEECDGGIIEIPTFGQKNSLNVASAAPVVVFEVLRQWG 446
++ R+ L +L L+ID Q L + ED G G SA+R+Y SF+ KQ P+ + AAA R A QI FL+ +++ QAEF+R+HD Q R P++L+LDNVRSA+NVGS+FRTA+ + ++T G TPHP EKL+K+A + VPS HF+TT A+ ++ E + + METT RSQ Y+ ++P L+LGNEV GVDT V+ + D I+EIP +G KNSLN+A+ APVV++EVLRQW
Sbjct: 69 IIDERRNRLWKSLRELEIDAQELDEAAISSLEDPTLGYDNRYGKSAIRTYRSFLYST--KQPTPLSTISATAAAHRCARQIQFLLNRHKSHQAEFVRHHDAP----QQSSRRTFPIILLLDNVRSAFNVGSIFRTADACGVSLVVTVGITPHPGGSGQEKLQKSALGAERLVPSVHFATTRQAMEFLRNEKSDYQIIGMETTERSQLYSDYSYPASGVVLLLGNEVTGVDTDVMNDLD-AIVEIPMYGAKNSLNIAACAPVVLYEVLRQWN 332
BLAST of EWM21952.1 vs. NCBI_GenBank
Match: gi|298712565|emb|CBJ33268.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 199.519 bits (506), Expect = 3.432e-54 Identity = 122/330 (36.97%), Postives = 172/330 (52.12%), Query Frame = 0
Query: 196 ARKAALDAALTSLDIDLQALSQEDQVTGSGSSALRSYFSFVQPRPHKQHAPVDNALEAAALRAANQIAFLVRAYRAEQAEFLRNHDEAMSRLQSFPRSMHPLVLILDNVRSAYNVGSLFRTAETALLQELITCGFTPHP---PHEKLKKTACRSLENVPSRHFSTTLDAVRTMKEEGFVVFAMETTSRSQCYTHVAFP----------------EKAALVLGNEVI----------------GVDTAVLEECDGG----------------------------------IIEIPTFGQKNSLNVASAAPVVVFEVLRQWGTFDKAEGKVD 456
AR+ ALD AL ++ +D + L++ D+ G+ +AL+SY +FV+PRP + + + AALR A+Q+AFLVR +RA++AE+LRN D +M+ + HP+ L+ DNVRSAYNVGS+FR+A+TA + E+ITCGFTPHP EK++KT S++ V RHF +AVR++K G V A+ETT + V FP A G +V+ D +E DGG ++E+P FG KNSLNVASA VV++EVLRQW + G D
Sbjct: 242 ARQEALDEALVTVGVDPRELTEADEFFGT--AALKSYNTFVRPRPKQLAKVMQEPVARAALRTASQVAFLVRRHRADRAEYLRNKDASMTEAERRGLVAHPVALVCDNVRSAYNVGSIFRSADTARVAEVITCGFTPHPGGHGEEKVRKTGFGSVDAVAHRHFEDPSEAVRSLKAAGAFVCALETTDNASSLFDVRFPLPPALEGKARPKNASAVDAGTAGGGDVVRGSFAAEDSENEARAPKTDGRAVERLDGGSRGGLELEEGGVVALVLGNEVTGVDERVLGLCDLVVEVPVFGLKNSLNVASAGTVVLYEVLRQWSVAGRLAGSGD 569
BLAST of EWM21952.1 vs. NCBI_GenBank
Match: gi|551587800|ref|XP_005778727.1| (hypothetical protein EMIHUDRAFT_469008 [Emiliania huxleyi CCMP1516] >gi|485631163|gb|EOD26298.1| hypothetical protein EMIHUDRAFT_469008 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 182.57 bits (462), Expect = 4.284e-50 Identity = 102/232 (43.97%), Postives = 139/232 (59.91%), Query Frame = 0
Query: 230 RSYFSFVQPRPHKQHAPVDN-ALEAAALRAANQIAFLVRAYRAEQAEFLRNHDEAMSRLQSFPRSMHPLVLILDNVRSAYNVGSLFRTAETALLQELITCGFTPHPPHEKLKKTACRSLENVPSRHFSTTLDAVRTMKEEGFVVFAMETTSRSQCYTHVAFP-----------EKAALVLGNEVIGVDTAVLEECDGGIIEIPTFGQKNSLNVASAAPVVVFEVLRQWGTFD 449
++Y +F +PR + P D+ + A A Q+AFL R +A + E LRN D+A L+ R H + ++LDN+RSA NVGS+FRTA+ + ++TCGFT PP KL+KTA +L +VP HF T+ AVR ++ G V A+ETT A P A+VLGNEV GVD AV+EECD ++EIP FG KNSLNVA A V ++EVLR+WG ++
Sbjct: 98 KAYETFARPR---EGEPCDDDYVRRKAPLMAQQVAFLHRHEQARRNELLRNVDDATQALERAARPRHNVTVVLDNLRSAENVGSIFRTADATRVCRVVTCGFTTTPPDRKLEKTALGALSSVPCDHFEATIAAVRHLRSRGVYVVALETTED-------AIPLGVAPQLGDEGRGVAIVLGNEVTGVDKAVMEECD-AVVEIPVFGVKNSLNVACCASVALYEVLRRWGKWE 318
BLAST of EWM21952.1 vs. NCBI_GenBank
Match: gi|551666987|ref|XP_005836254.1| (hypothetical protein GUITHDRAFT_104804 [Guillardia theta CCMP2712] >gi|428180407|gb|EKX49274.1| hypothetical protein GUITHDRAFT_104804 [Guillardia theta CCMP2712]) HSP 1 Score: 181.415 bits (459), Expect = 1.278e-49 Identity = 83/132 (62.88%), Postives = 105/132 (79.55%), Query Frame = 0
Query: 315 RTAETALLQELITCGFTPHPPHEKLKKTACRSLENVPSRHFSTTLDAVRTMKEEGFVVFAMETTSRSQCYTHVAFPEKAALVLGNEVIGVDTAVLEECDGGIIEIPTFGQKNSLNVASAAPVVVFEVLRQWG 446
RT+E A Q+++TCGFTPHPPHEKL KTA ++E VPSRHF TT +A+R +K EG + METTSRS+ Y +++P+ ALVLGNE+ G+ T V+++CD ++EIPTFG KNSLNVASA PVVVFEVLRQWG
Sbjct: 202 RTSERAADQQVVTCGFTPHPPHEKLSKTALSAIEFVPSRHFETTAEAIRVLKSEGVHIIGMETTSRSKSYVRLSYPQPCALVLGNELTGICTQVMQDCD-ELVEIPTFGVKNSLNVASACPVVVFEVLRQWG 332 HSP 2 Score: 62.3882 bits (150), Expect = 4.874e-7 Identity = 45/123 (36.59%), Postives = 66/123 (53.66%), Query Frame = 0
Query: 181 SSHRCAATRE-DAVVPARKAALDAALTSLDIDLQALSQEDQVTG--SGSSALRSYFSFVQPRPHKQHAPVDNALEAAALRAANQIAFLVRAYRAEQAEFLRNHDEAMSRLQSFPRSMHPLVLI 300
+SH RE D+ P R ALD AL L + ED ++ G+ A R+Y S+V PR ++ V+ E+AA R A Q++FL+R +RA A++LRN D A +S HP+ L+
Sbjct: 10 ASHVLGTPREGDSSSPLRARALDEALRRL-----GENPEDILSDMFQGTPAKRAYMSYVNPRANRTPNNVETMEESAA-RTAKQVSFLMREHRATLADYLRNVDAARQEQESLGLEPHPITLV 126
BLAST of EWM21952.1 vs. NCBI_GenBank
Match: gi|551575165|ref|XP_005773305.1| (hypothetical protein EMIHUDRAFT_458475 [Emiliania huxleyi CCMP1516] >gi|485624916|gb|EOD20876.1| hypothetical protein EMIHUDRAFT_458475 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 169.859 bits (429), Expect = 5.320e-45 Identity = 115/216 (53.24%), Postives = 137/216 (63.43%), Query Frame = 0
Query: 226 SSALRSYFSFVQPRPHKQHAPVDNALEAAALRAANQIAFLVRAYRAEQAEFLRNHDEAMSRLQS-FPRSMHPLVLILDNVRSAYNVGSLFRTAETALLQELITCGFTPHPPHEKLKKTACRSLENVPSRHFSTTLDAVRTMKEEGFVVFAMETTSRSQCYTHVAFPEKA-ALVLGNEVIGVDTAVLEECDGGIIEIPTFGQKNSLNVASAAPVVVF 439
S A R Y +FV H AL AA RAA+ I L R A A +LRN+D A+ ++ P H + L+LDNVRSAYNVGS+FRTA+TA E+ITCGFTPHPP+ KL KTA ++E + + A++ G V+AMETT RSQ Y+ VAFP ALVLGNE IGVDT VL D GI+EIPTFG KNSLNVASAA VVVF
Sbjct: 157 SPASRVYETFVARWAEDVHG---EALLPAARRAAHHILHLFREQAAAAAAYLRNNDAAVDAGRARLP--AHRVHLVLDNVRSAYNVGSIFRTADTARCAEVITCGFTPHPPNPKLAKTAFGAIE--------SAVRALQAGGAGGVAVYAMETTERSQAYSTVAFPPGGVALVLGNEQIGVDTDVLAAVD-GIVEIPTFGVKNSLNVASAATVVVF 358 The following BLAST results are available for this feature:
BLAST of EWM21952.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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