EWM21959.1, cds8714 (CDS) Nannochloropsis gaditana

Overview
NameEWM21959.1
Unique Namecds8714
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:53851..54039 -
Alignment locationKK037250.1:53472..53643 -

Link to JBrowse

Properties
Property NameValue
Start range53472
Start range.
Protein idEWM21959.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101212g1.6002.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:53851..54039 -
KK037250.1supercontigKK037250.1:53472..53643 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM21959.1 vs. NCBI_GenBank
Match: gi|585102319|gb|EWM21959.1| (hypothetical protein Naga_101212g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 242.662 bits (618), Expect = 3.601e-81
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0
Query:    1 MAAAAPSSPSPSSMEKPKPNVGEILKKSAMRALGGGISGAAAMGINVGALMWLRTTVNYQYRNGTTMRVALKTLYADGGIPRFYQGLLPALVQGPASRFGDTAANAGVITLLDSFDETKV 120
            MAAAAPSSPSPSSMEKPKPNVGEILKKSAMRALGGGISGAAAMGINVGALMWLRTTVNYQYRNGTTMRVALKTLYADGGIPRFYQGLLPALVQGPASRFGDTAANAGVITLLDSFDETKV
Sbjct:    1 MAAAAPSSPSPSSMEKPKPNVGEILKKSAMRALGGGISGAAAMGINVGALMWLRTTVNYQYRNGTTMRVALKTLYADGGIPRFYQGLLPALVQGPASRFGDTAANAGVITLLDSFDETKV 120          
BLAST of EWM21959.1 vs. NCBI_GenBank
Match: gi|224007389|ref|XP_002292654.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220971516|gb|EED89850.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 168.703 bits (426), Expect = 9.896e-50
Identity = 78/112 (69.64%), Postives = 95/112 (84.82%), Query Frame = 0
Query:    8 SPSPSSMEKPKPNVGEILKKSAMRALGGGISGAAAMGINVGALMWLRTTVNYQYRNGTTMRVALKTLYADGGIPRFYQGLLPALVQGPASRFGDTAANAGVITLLDSFDETK 119
            S + +   KP+P +GEIL K+A  A+ GG +GA AMG+NVGALMW+RTTVNYQYRNGT+  VALKTLYADGGIPRFY+G+LPAL+QGP SRFGDTAAN G++TL++SFD TK
Sbjct:    2 SATTTEETKPQPTLGEILDKAAKSAMRGGTAGAVAMGLNVGALMWMRTTVNYQYRNGTSFPVALKTLYADGGIPRFYRGVLPALIQGPLSRFGDTAANTGMLTLMNSFDATK 113          
BLAST of EWM21959.1 vs. NCBI_GenBank
Match: gi|219120731|ref|XP_002181098.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407814|gb|EEC47750.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 153.295 bits (386), Expect = 1.102e-43
Identity = 71/105 (67.62%), Postives = 85/105 (80.95%), Query Frame = 0
Query:   15 EKPKPNVGEILKKSAMRALGGGISGAAAMGINVGALMWLRTTVNYQYRNGTTMRVALKTLYADGGIPRFYQGLLPALVQGPASRFGDTAANAGVITLLDSFDETK 119
            E  +P+  EIL KSA  A+ GG +GA AMG NV ALMW+RTT+NYQYRNGT+  VAL+ LYADGGIPRFY+G+LPAL QGP SRFGDTAAN G++T+L+S D TK
Sbjct:   15 ESTQPSFREILNKSAASAVRGGTAGAVAMGANVAALMWMRTTINYQYRNGTSFPVALRALYADGGIPRFYRGVLPALAQGPLSRFGDTAANTGILTMLNSLDATK 119          
BLAST of EWM21959.1 vs. NCBI_GenBank
Match: gi|633910952|gb|KDD75437.1| (hypothetical protein H632_c685p1 [Helicosporidium sp. ATCC 50920])

HSP 1 Score: 149.828 bits (377), Expect = 6.990e-42
Identity = 76/110 (69.09%), Postives = 87/110 (79.09%), Query Frame = 0
Query:   10 SPSSMEKPKPNVGEILKKSAMRALGGGISGAAAMGINVGALMWLRTTVNYQYRNGTTMRVALKTLYADGGIPRFYQGLLPALVQGPASRFGDTAANAGVITLLDSFDETK 119
            SPS  EKP   + E+LK +  RALGGG+ GAAAMGI V +LMWLRTTVNYQYR GTT  VALKTLY +GG+ RFY+GL PALVQGP SRFGDTAANAGV+TLL+    T+
Sbjct:   51 SPS--EKPAQPLSEVLKNAGRRALGGGVPGAAAMGIQVLSLMWLRTTVNYQYRYGTTTTVALKTLYKEGGVVRFYRGLGPALVQGPLSRFGDTAANAGVLTLLNEHSSTR 158          
BLAST of EWM21959.1 vs. NCBI_GenBank
Match: gi|1210516195|dbj|GAX25011.1| (hypothetical protein FisN_2Lh295 [Fistulifera solaris])

HSP 1 Score: 146.747 bits (369), Expect = 3.585e-41
Identity = 68/110 (61.82%), Postives = 87/110 (79.09%), Query Frame = 0
Query:   10 SPSSMEKPKPNVGEILKKSAMRALGGGISGAAAMGINVGALMWLRTTVNYQYRNGTTMRVALKTLYADGGIPRFYQGLLPALVQGPASRFGDTAANAGVITLLDSFDETK 119
            + +S ++   +  +++ K+A  AL GG +GA AMG NVGALMW+RTT+NYQYRNGTT   AL+TLYADGGIPRFY+G+LPAL+QGP SRFGDTAAN GV+T L+  + TK
Sbjct:    2 TDASKKEEVLSFSQVMNKAAASALRGGTAGAIAMGANVGALMWMRTTINYQYRNGTTFPTALRTLYADGGIPRFYRGVLPALIQGPLSRFGDTAANTGVLTALNGLESTK 111          
BLAST of EWM21959.1 vs. NCBI_GenBank
Match: gi|929754464|ref|XP_014152214.1| (hypothetical protein SARC_09248 [Sphaeroforma arctica JP610] >gi|906946802|gb|KNC78312.1| hypothetical protein SARC_09248 [Sphaeroforma arctica JP610])

HSP 1 Score: 147.132 bits (370), Expect = 3.673e-41
Identity = 73/118 (61.86%), Postives = 89/118 (75.42%), Query Frame = 0
Query:    1 MAAAAPSSPSPSSMEKPKPNVGEILKKSAMRALGGGISGAAAMGINVGALMWLRTTVNYQYRNGTTMRVALKTLYADGGIPRFYQGLLPALVQGPASRFGDTAANAGVITLLDSFDET 118
            MAA   ++P+   M+KPK ++ EIL  +  RA+GGG+ GA AMGINV +LMWLRTT+NYQYR GT+   A K LY +GGI RFY+G  PAL QGP SRFGDTAANAGV+ LLDS+D T
Sbjct:    1 MAAVDANAPA---MQKPKKSLQEILTAAGKRAIGGGVPGAVAMGINVTSLMWLRTTMNYQYRYGTSTTEAFKHLYKEGGIRRFYRGYGPALFQGPLSRFGDTAANAGVLALLDSYDTT 115          
BLAST of EWM21959.1 vs. NCBI_GenBank
Match: gi|1072221896|gb|OEU06675.1| (mitochondrial carrier [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 142.124 bits (357), Expect = 3.882e-39
Identity = 67/97 (69.07%), Postives = 78/97 (80.41%), Query Frame = 0
Query:   23 EILKKSAMRALGGGISGAAAMGINVGALMWLRTTVNYQYRNGTTMRVALKTLYADGGIPRFYQGLLPALVQGPASRFGDTAANAGVITLLDSFDETK 119
            EI+ KSA  A+ GG +GA AMG NV ALMW+RTT+NYQYRNG +   ALK LY DGGIPRFY+G+LPALVQGP SRFGDTAAN GV+T LD+ + TK
Sbjct:   30 EIMNKSAASAIRGGTAGALAMGANVAALMWMRTTINYQYRNGGSFVGALKHLYGDGGIPRFYRGVLPALVQGPLSRFGDTAANTGVLTFLDNIESTK 126          
BLAST of EWM21959.1 vs. NCBI_GenBank
Match: gi|159486799|ref|XP_001701425.1| (mitochondrial carrier protein [Chlamydomonas reinhardtii] >gi|158271727|gb|EDO97541.1| mitochondrial carrier protein [Chlamydomonas reinhardtii])

HSP 1 Score: 143.665 bits (361), Expect = 7.824e-39
Identity = 69/111 (62.16%), Postives = 81/111 (72.97%), Query Frame = 0
Query:    6 PSSPSPSSMEKPKPNVGEILKKSAMRALGGGISGAAAMGINVGALMWLRTTVNYQYRNGTTMRVALKTLYADGGIPRFYQGLLPALVQGPASRFGDTAANAGVITLLDSFD 116
            P   S S   K K  +GEIL  +  +AL GG+ G  AMGI V +LMWLRTT+NYQYR GTT   AL+TLY+ GGIPRFYQGLLPAL+QGP SRFGDTAAN G++ LL+  D
Sbjct:   99 PKQASGSVAPKKKKEIGEILSTAGKKALSGGVPGMVAMGIQVLSLMWLRTTINYQYRYGTTTMEALRTLYSQGGIPRFYQGLLPALIQGPLSRFGDTAANTGMLALLEDVD 209          
BLAST of EWM21959.1 vs. NCBI_GenBank
Match: gi|1210514425|dbj|GAX26755.1| (hypothetical protein FisN_2Hh295 [Fistulifera solaris])

HSP 1 Score: 139.428 bits (350), Expect = 3.027e-38
Identity = 69/120 (57.50%), Postives = 87/120 (72.50%), Query Frame = 0
Query:   10 SPSSMEKPKPNVGEILKKSAMRALGGGISGAAAMGINVGALMWLRTTV----------NYQYRNGTTMRVALKTLYADGGIPRFYQGLLPALVQGPASRFGDTAANAGVITLLDSFDETK 119
            + +S ++   +  +++ K+A  AL GG +GA AMG NVGALMW+RTTV          NYQYRNGTT   AL+TLYADGGIPRFY+G+LPAL+QGP SRFGDTAAN GV+T L+  + TK
Sbjct:    2 TDASKKEEVLSFSQVMNKAAASALRGGTAGAIAMGANVGALMWMRTTVSLCLLSFCCINYQYRNGTTFPTALRTLYADGGIPRFYRGVLPALIQGPLSRFGDTAANTGVLTALNGLESTK 121          
BLAST of EWM21959.1 vs. NCBI_GenBank
Match: gi|302853064|ref|XP_002958049.1| (mitochondrial substrate carrier [Volvox carteri f. nagariensis] >gi|300256627|gb|EFJ40889.1| mitochondrial substrate carrier [Volvox carteri f. nagariensis])

HSP 1 Score: 140.198 bits (352), Expect = 1.203e-37
Identity = 68/122 (55.74%), Postives = 86/122 (70.49%), Query Frame = 0
Query:    1 MAAAAPSSPSPSSM------EKPKPNVGEILKKSAMRALGGGISGAAAMGINVGALMWLRTTVNYQYRNGTTMRVALKTLYADGGIPRFYQGLLPALVQGPASRFGDTAANAGVITLLDSFD 116
            +AA   + P+P         ++ K ++GE++  +  +AL GG+ G  AM I V +LMWLRTT+NYQYR GTT   ALKTLYA GGIPRFYQGLLPAL+QGP SRFGDTAAN G++ LL+  D
Sbjct:   88 LAAVTLAQPAPKQETGTVAGKQNKKSIGEVISLAGKKALSGGVPGMVAMAIQVLSLMWLRTTINYQYRYGTTTMEALKTLYAQGGIPRFYQGLLPALIQGPLSRFGDTAANTGMLALLEDVD 209          
The following BLAST results are available for this feature:
BLAST of EWM21959.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102319|gb|EWM21959.1|3.601e-81100.00hypothetical protein Naga_101212g1, partial [Nanno... [more]
gi|224007389|ref|XP_002292654.1|9.896e-5069.64predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|219120731|ref|XP_002181098.1|1.102e-4367.62predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|633910952|gb|KDD75437.1|6.990e-4269.09hypothetical protein H632_c685p1 [Helicosporidium ... [more]
gi|1210516195|dbj|GAX25011.1|3.585e-4161.82hypothetical protein FisN_2Lh295 [Fistulifera sola... [more]
gi|929754464|ref|XP_014152214.1|3.673e-4161.86hypothetical protein SARC_09248 [Sphaeroforma arct... [more]
gi|1072221896|gb|OEU06675.1|3.882e-3969.07mitochondrial carrier [Fragilariopsis cylindrus CC... [more]
gi|159486799|ref|XP_001701425.1|7.824e-3962.16mitochondrial carrier protein [Chlamydomonas reinh... [more]
gi|1210514425|dbj|GAX26755.1|3.027e-3857.50hypothetical protein FisN_2Hh295 [Fistulifera sola... [more]
gi|302853064|ref|XP_002958049.1|1.203e-3755.74mitochondrial substrate carrier [Volvox carteri f.... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8744rna8744Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications