EWM22004.1, cds8671 (CDS) Nannochloropsis gaditana

Overview
NameEWM22004.1
Unique Namecds8671
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:621364..621371 -
Alignment locationKK037249.1:620658..621244 -
Alignment locationKK037249.1:620510..620610 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22004.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100353g6.3231.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:621364..621371 -
KK037249.1supercontigKK037249.1:620658..621244 -
KK037249.1supercontigKK037249.1:620510..620610 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM22004.1 vs. NCBI_GenBank
Match: gi|585102400|gb|EWM22004.1| (hypothetical protein Naga_100353g6 [Nannochloropsis gaditana])

HSP 1 Score: 471.085 bits (1211), Expect = 5.374e-168
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0
Query:    1 MTPNLTKRTIMRRGLSLLALGLTLALTTGQMLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIRASKPPKGVGKSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVKGTKTRKVTCVPGPTAAPTAAPTVFSGPWRKIIETLRIGPHEFRCKSSTWKNLQVM 231
            MTPNLTKRTIMRRGLSLLALGLTLALTTGQMLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIRASKPPKGVGKSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVKGTKTRKVTCVPGPTAAPTAAPTVFSGPWRKIIETLRIGPHEFRCKSSTWKNLQVM
Sbjct:    1 MTPNLTKRTIMRRGLSLLALGLTLALTTGQMLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIRASKPPKGVGKSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVKGTKTRKVTCVPGPTAAPTAAPTVFSGPWRKIIETLRIGPHEFRCKSSTWKNLQVM 231          
BLAST of EWM22004.1 vs. NCBI_GenBank
Match: gi|585102398|gb|EWM22002.1| (hypothetical protein Naga_100353g5 [Nannochloropsis gaditana])

HSP 1 Score: 462.996 bits (1190), Expect = 1.068e-163
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0
Query:    4 NLTKRTIMRRGLSLLALGLTLALTTGQMLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIRASKPPKGVGKSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVKGTKTRKVTCVPGPTAAPTAAPTVFSGPWRKIIETLRIGPHEFRCKSSTWKNLQVM 231
            NLTKRTIMRRGLSLLALGLTLALTTGQMLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIRASKPPKGVGKSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVKGTKTRKVTCVPGPTAAPTAAPTVFSGPWRKIIETLRIGPHEFRCKSSTWKNLQVM
Sbjct:   73 NLTKRTIMRRGLSLLALGLTLALTTGQMLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIRASKPPKGVGKSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVKGTKTRKVTCVPGPTAAPTAAPTVFSGPWRKIIETLRIGPHEFRCKSSTWKNLQVM 300          
BLAST of EWM22004.1 vs. NCBI_GenBank
Match: gi|553178588|ref|XP_005852576.1| (hypothetical protein NGA_0721300 [Nannochloropsis gaditana CCMP526] >gi|422295956|gb|EKU23255.1| hypothetical protein NGA_0721300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 308.145 bits (788), Expect = 3.296e-104
Identity = 169/176 (96.02%), Postives = 173/176 (98.30%), Query Frame = 0
Query:   11 MRRGLSLLALGLTLALTTGQMLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIRASKPPKGVGKSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVKGTKTRKVTCV 186
            MRRGLSLLALGLTLALTTGQMLSLKSIKTFERTQMNKDKWSMK HLEDPTLAVVSGIGT+GLTVTLLD A DTLDTA+FAAGDCMVRK+SKGARCKMMGARVSIRASKPPKGVGKSHNSTGGY+SVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVKGTKTRKVTCV
Sbjct:    1 MRRGLSLLALGLTLALTTGQMLSLKSIKTFERTQMNKDKWSMKGHLEDPTLAVVSGIGTNGLTVTLLDMAADTLDTASFAAGDCMVRKSSKGARCKMMGARVSIRASKPPKGVGKSHNSTGGYFSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVKGTKTRKVTCV 176          
BLAST of EWM22004.1 vs. NCBI_GenBank
Match: gi|585102401|gb|EWM22005.1| (hypothetical protein Naga_100353g3 [Nannochloropsis gaditana])

HSP 1 Score: 296.59 bits (758), Expect = 1.302e-98
Identity = 172/199 (86.43%), Postives = 180/199 (90.45%), Query Frame = 0
Query:    4 NLTKRTIMRRGLSLLALGLTLALTTGQMLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIRASKPPKGVG-KSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVKGTKTRKVTCVPG---PTAAPTAAPT 198
            N TK TIMRRGLSLLALGLTLALTTGQMLSLKSIKTFERT+MNKDKWSMK +LEDPTLAVVSGIGTSGLTVTLLDTADDTLDTA+FAAGDCMVRKNSKGA+CKMMGARVSIRASKPPKGV  K++NSTGGYYSVSGSFR VQLQEDPV  PLTAELTV GVGTLSQTLT CSV+G  T + TCVPG   PT APTAA T
Sbjct:   61 NFTKLTIMRRGLSLLALGLTLALTTGQMLSLKSIKTFERTRMNKDKWSMKGNLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTASFAAGDCMVRKNSKGAKCKMMGARVSIRASKPPKGVKVKTYNSTGGYYSVSGSFRGVQLQEDPVISPLTAELTVQGVGTLSQTLTDCSVRGAGTTRTTCVPGPIIPTNAPTAAST 259          
BLAST of EWM22004.1 vs. NCBI_GenBank
Match: gi|585112674|gb|EWM30045.1| (hypothetical protein Naga_101600g1 [Nannochloropsis gaditana])

HSP 1 Score: 177.563 bits (449), Expect = 1.413e-52
Identity = 98/195 (50.26%), Postives = 129/195 (66.15%), Query Frame = 0
Query:   11 MRRGLSLLALGLTLALTTGQMLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIRASKPPKGV---GKSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCS--VKGT-KTRKVTCVPGP---TAAPTAA 196
            MRR LSLLALG+TL +T GQ  +LK++K  ER++  +D+WSMK +L++P + VV  IG  GLTV LLD + D L +  FAA +C + +N +G RCK MGARVSI+ ++ PKG      + NSTGGYY  SG FRR+Q  +DPV  PLT ++ V G  TL   ++ CS   KG  +  K+TC PGP   T APTAA
Sbjct:    1 MRRILSLLALGVTLVMTAGQEFTLKNVKVAERSKTARDQWSMKGNLDNPAMNVVPAIGQLGLTVNLLDVSLDPLASTAFAATNCKLLRNGRGVRCKKMGARVSIKRTRRPKGAKVKSSNSNSTGGYYGASGMFRRLQFLQDPVVTPLTVQVVV-GSTTLPAIVSTCSERTKGAGRITKITCTPGPAPVTPAPTAA 194          
BLAST of EWM22004.1 vs. NCBI_GenBank
Match: gi|585112664|gb|EWM30036.1| (hypothetical protein Naga_100179g1 [Nannochloropsis gaditana])

HSP 1 Score: 180.644 bits (457), Expect = 1.075e-51
Identity = 94/190 (49.47%), Postives = 128/190 (67.37%), Query Frame = 0
Query:    9 TIMRRGLSLLALGLTLALTTGQ-MLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIRASKPPKGV---GKSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGV-GTLSQTLTGCS--VKGT-KTRKVTCVPGPT 190
            T MRR   LLALG+TL +T GQ + +LK++K  ++++  +D+WSMK +L+DPT+ VV  IG  GLTV L D A  TL++  FAA DC +R+N +G  CK  GARVSI+ S+ PKG      ++NSTGGYYS SG FRR+Q  +DP+ FPLT  L VP +    S  ++ CS  +KG  +T ++TC PGPT
Sbjct:   18 TTMRRAFFLLALGITLVMTAGQDLFTLKNVKVIDKSKTARDQWSMKGNLDDPTMTVVPLIGQEGLTVELQDMALATLESTAFAASDCKLRRNGRGVSCKTRGARVSIKMSRRPKGAYVQNSNYNSTGGYYSASGMFRRLQFLQDPIVFPLTVVLNVPSIPFPPSAMVSSCSEKIKGAGRTTRITCTPGPT 207          
BLAST of EWM22004.1 vs. NCBI_GenBank
Match: gi|553189589|ref|XP_005855033.1| (hypothetical protein NGA_0415500 [Nannochloropsis gaditana CCMP526] >gi|422294031|gb|EKU21331.1| hypothetical protein NGA_0415500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 167.548 bits (423), Expect = 9.468e-49
Identity = 81/157 (51.59%), Postives = 109/157 (69.43%), Query Frame = 0
Query:   11 MRRGLSLLALGLTLALTTGQ-MLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIRASKPPKGV---GKSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGV 163
            MRR   LLALG+TL +T GQ + +LK++K  ++++  +D+WSMK +L+DPT+ VV  IG  GLTV L D A  TL++  FAA DC +R+N +G  CK  GARVSI+ S+ PKG      ++NSTGGYYS SG FRR+Q  +DP+ FPLT  L VP +
Sbjct:    1 MRRAFFLLALGITLVMTAGQDLFTLKNVKVIDKSKTARDQWSMKGNLDDPTMTVVPLIGQEGLTVELQDMALATLESTAFAASDCKLRRNGRGVSCKTRGARVSIKMSRRPKGANVQNSNYNSTGGYYSASGMFRRLQFLQDPIVFPLTVVLNVPSI 157          
BLAST of EWM22004.1 vs. NCBI_GenBank
Match: gi|585108538|gb|EWM26485.1| (Neuraminidase, partial [Nannochloropsis gaditana])

HSP 1 Score: 162.155 bits (409), Expect = 5.817e-46
Identity = 98/194 (50.52%), Postives = 121/194 (62.37%), Query Frame = 0
Query:   11 MRRGLSLLALGLT----LALTTGQMLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIRAS-----KPPKGV-GKSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVKGTKTRKVT---CVPGPTA 191
            MR  LSLL LG+T    L  T GQ L+LKSI+T +R+  NKD W MK ++ DP+L +V  IG +GLTV L D A D L+T  FAA DC V  + + A CK+ GARVSI+ S     K PK V  KS+NSTGGYYSV+G+FR +   E+PV  PLTA L + G   LS TLT C     K+ + T   C PGP A
Sbjct:    1 MRSALSLLVLGVTFGSTLVPTAGQDLNLKSIRTVDRSVTNKDTWKMKGNINDPSLTIVPAIGQTGLTVELQDAATDPLNTVAFAASDCRVPAHGRRATCKIRGARVSIKTSRRPKVKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALRING-SVLSDTLTSCYDLARKSGRNTISHCEPGPPA 193          
BLAST of EWM22004.1 vs. NCBI_GenBank
Match: gi|585108537|gb|EWM26484.1| (Neuraminidase, partial [Nannochloropsis gaditana])

HSP 1 Score: 162.155 bits (409), Expect = 1.869e-45
Identity = 98/194 (50.52%), Postives = 121/194 (62.37%), Query Frame = 0
Query:   11 MRRGLSLLALGLT----LALTTGQMLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIRAS-----KPPKGV-GKSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVKGTKTRKVT---CVPGPTA 191
            MR  LSLL LG+T    L  T GQ L+LKSI+T +R+  NKD W MK ++ DP+L +V  IG +GLTV L D A D L+T  FAA DC V  + + A CK+ GARVSI+ S     K PK V  KS+NSTGGYYSV+G+FR +   E+PV  PLTA L + G   LS TLT C     K+ + T   C PGP A
Sbjct:    1 MRSALSLLVLGVTFGSTLVPTAGQDLNLKSIRTVDRSVTNKDTWKMKGNINDPSLTIVPAIGQTGLTVELQDAATDPLNTVAFAASDCRVPAHGRRATCKIRGARVSIKTSRRPKVKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALRING-SVLSDTLTSCYDLARKSGRNTISHCEPGPPA 193          
BLAST of EWM22004.1 vs. NCBI_GenBank
Match: gi|585109630|gb|EWM27399.1| (hypothetical protein Naga_100212g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 161.384 bits (407), Expect = 1.977e-45
Identity = 101/201 (50.25%), Postives = 121/201 (60.20%), Query Frame = 0
Query:   11 MRRGLSLLALGLTLA----LTTGQMLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIRASKPPK------GVGKSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVKGTKTRKVT---CVPGPTAAPTAAPT 198
            MR  LSLLALG+TL      T GQ L+LKSI+  +R+  NKD W MK  + DP+L +VS IG  GLTV L D A D L+T TFAA DC V  + + A CK+ GARVSI+ S+ PK         KS+NSTGGYYSV+G+FR +   E+PV  PLTA LTV     LS TLT C     K  + T   C PGP   P   PT
Sbjct:    1 MRSTLSLLALGITLGSTLVTTAGQDLNLKSIRAVDRSVTNKDTWKMKGSINDPSLTIVSAIGQKGLTVELQDAATDPLNTVTFAASDCRVPAHGRRAACKIRGARVSIKTSRRPKIKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALTV-DESVLSDTLTLCYNLPRKNGRNTISHCEPGP---PVPTPT 197          
The following BLAST results are available for this feature:
BLAST of EWM22004.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102400|gb|EWM22004.1|5.374e-168100.00hypothetical protein Naga_100353g6 [Nannochloropsi... [more]
gi|585102398|gb|EWM22002.1|1.068e-163100.00hypothetical protein Naga_100353g5 [Nannochloropsi... [more]
gi|553178588|ref|XP_005852576.1|3.296e-10496.02hypothetical protein NGA_0721300 [Nannochloropsis ... [more]
gi|585102401|gb|EWM22005.1|1.302e-9886.43hypothetical protein Naga_100353g3 [Nannochloropsi... [more]
gi|585112674|gb|EWM30045.1|1.413e-5250.26hypothetical protein Naga_101600g1 [Nannochloropsi... [more]
gi|585112664|gb|EWM30036.1|1.075e-5149.47hypothetical protein Naga_100179g1 [Nannochloropsi... [more]
gi|553189589|ref|XP_005855033.1|9.468e-4951.59hypothetical protein NGA_0415500 [Nannochloropsis ... [more]
gi|585108538|gb|EWM26485.1|5.817e-4650.52Neuraminidase, partial [Nannochloropsis gaditana][more]
gi|585108537|gb|EWM26484.1|1.869e-4550.52Neuraminidase, partial [Nannochloropsis gaditana][more]
gi|585109630|gb|EWM27399.1|1.977e-4550.25hypothetical protein Naga_100212g1, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8700rna8700Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications