EWM22023.1, cds8650 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM22023.1
Unique Name	cds8650
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037249.1:575159..575241 -
Alignment location	KK037249.1:574865..575051 -
Alignment location	KK037249.1:574647..574730 -
Alignment location	KK037249.1:574428..574526 -
Alignment location	KK037249.1:574243..574347 -
Alignment location	KK037249.1:574094..574149 -

Link to JBrowse

Properties


Property Name	Value
Start range	574094
Start range	.
Protein id	EWM22023.1
Product	heat shock protein 101
Partial	true
Orig transcript id	gnl\|cribi\|Naga_102025g1.8927.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:575159..575241 -
KK037249.1	supercontig	KK037249.1:574865..575051 -
KK037249.1	supercontig	KK037249.1:574647..574730 -
KK037249.1	supercontig	KK037249.1:574428..574526 -
KK037249.1	supercontig	KK037249.1:574243..574347 -
KK037249.1	supercontig	KK037249.1:574094..574149 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Biological Process**
Term	Definition
GO:0006139	nucleobase-containing compound metabolic process
GO:0009058	biosynthetic process
GO:0019538	protein metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0000166	nucleotide binding
GO:0005524	ATP binding

Vocabulary: **INTERPRO**
Term	Definition
IPR018368	ClpA/B_CS1
IPR027417	P-loop_NTPase

Homology

[Close]

BLAST of EWM22023.1 vs. NCBI_GenBank
Match: gi|585102433|gb|EWM22023.1| (heat shock protein 101, partial [Nannochloropsis gaditana])

HSP 1 Score: 410.609 bits (1054), Expect = 4.922e-145
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0

Query:    1 MDAANLLKPMLARGELRCIGATTLKEYRQHVEKDPAFERRFQPVLVGEPSVPATISILRGLKERYESHHGIRITDAALVLAAKLADRYIQNRFLPDKAIDLVDEACSMIRVQLDSRPERIDQLERALLQLEVEATALQREEDAQSKARLTEVEKEMASIKDELQPLQLRYQAEKSQVNEQHRLQNKVLELQRKISVAMRDRDMG 204
            MDAANLLKPMLARGELRCIGATTLKEYRQHVEKDPAFERRFQPVLVGEPSVPATISILRGLKERYESHHGIRITDAALVLAAKLADRYIQNRFLPDKAIDLVDEACSMIRVQLDSRPERIDQLERALLQLEVEATALQREEDAQSKARLTEVEKEMASIKDELQPLQLRYQAEKSQVNEQHRLQNKVLELQRKISVAMRDRDMG
Sbjct:    1 MDAANLLKPMLARGELRCIGATTLKEYRQHVEKDPAFERRFQPVLVGEPSVPATISILRGLKERYESHHGIRITDAALVLAAKLADRYIQNRFLPDKAIDLVDEACSMIRVQLDSRPERIDQLERALLQLEVEATALQREEDAQSKARLTEVEKEMASIKDELQPLQLRYQAEKSQVNEQHRLQNKVLELQRKISVAMRDRDMG 204

[Close]

BLAST of EWM22023.1 vs. NCBI_GenBank
Match: gi|635367262|emb|CCI44512.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 286.96 bits (733), Expect = 2.650e-88
Identity = 141/203 (69.46%), Postives = 172/203 (84.73%), Query Frame = 0

Query:    1 MDAANLLKPMLARGELRCIGATTLKEYRQHVEKDPAFERRFQPVLVGEPSVPATISILRGLKERYESHHGIRITDAALVLAAKLADRYIQNRFLPDKAIDLVDEACSMIRVQLDSRPERIDQLERALLQLEVEATALQREEDAQSKARLTEVEKEMASIKDELQPLQLRYQAEKSQVNEQHRLQNKVLELQRKISVAMRDRDM 203
            MDAANLLKPMLARGELRCIGATTL EYRQHVEKD AFERRFQ V+V EPSV  T+SILRGLKERYESHHG++ITD+ALV AAKLADRYI  RF+PDKAID++DEAC+ +RVQLDS+PE ID+LER  LQL+VEATAL +E+D  SK RL +V+ E+ +I D+L PL L++QAEK +VNE  RL++K+ +LQ K+  A R++D+
Sbjct:  291 MDAANLLKPMLARGELRCIGATTLDEYRQHVEKDKAFERRFQQVMVKEPSVTDTVSILRGLKERYESHHGVQITDSALVTAAKLADRYITERFMPDKAIDIIDEACASVRVQLDSQPEAIDELERRQLQLQVEATALTKEKDEVSKQRLKKVQTELNTINDQLHPLMLQHQAEKERVNEVRRLKDKLQQLQLKVQKAERNQDL 493

[Close]

BLAST of EWM22023.1 vs. NCBI_GenBank
Match: gi|970655173|gb|KUF93371.1| (Regulatory-associated protein of mTOR [Phytophthora nicotianae])

HSP 1 Score: 280.796 bits (717), Expect = 7.984e-88
Identity = 140/203 (68.97%), Postives = 172/203 (84.73%), Query Frame = 0

Query:    1 MDAANLLKPMLARGELRCIGATTLKEYRQHVEKDPAFERRFQPVLVGEPSVPATISILRGLKERYESHHGIRITDAALVLAAKLADRYIQNRFLPDKAIDLVDEACSMIRVQLDSRPERIDQLERALLQLEVEATALQREEDAQSKARLTEVEKEMASIKDELQPLQLRYQAEKSQVNEQHRLQNKVLELQRKISVAMRDRDM 203
            MDAANLLKPMLARGELRCIGATTL EYR+HVEKD AFERRFQ V+V EPSV  T+SILRGLKERYESHHG++I DA+LV AAKLADRYI+ RF+PDKAID++DEAC+ +RVQLDS+PE ID+LER  LQL+VEATAL +E+DA SK RL +V++E+  I+DEL PL LR++AEK++VNE  +L+ K+  LQ K   A R++D+
Sbjct:  291 MDAANLLKPMLARGELRCIGATTLDEYREHVEKDKAFERRFQQVMVKEPSVTDTVSILRGLKERYESHHGVQIMDASLVAAAKLADRYIKERFMPDKAIDIIDEACANVRVQLDSQPEVIDELERRQLQLQVEATALAKEKDALSKERLKKVQEELNKIQDELSPLILRHEAEKARVNEIRQLREKLQHLQLKAEQAERNQDL 493

[Close]

BLAST of EWM22023.1 vs. NCBI_GenBank
Match: gi|325179668|emb|CCA14066.1| (heat shock protein 101 putative [Albugo laibachii Nc14])

HSP 1 Score: 282.722 bits (722), Expect = 9.298e-87
Identity = 140/203 (68.97%), Postives = 171/203 (84.24%), Query Frame = 0

Query:    1 MDAANLLKPMLARGELRCIGATTLKEYRQHVEKDPAFERRFQPVLVGEPSVPATISILRGLKERYESHHGIRITDAALVLAAKLADRYIQNRFLPDKAIDLVDEACSMIRVQLDSRPERIDQLERALLQLEVEATALQREEDAQSKARLTEVEKEMASIKDELQPLQLRYQAEKSQVNEQHRLQNKVLELQRKISVAMRDRDM 203
            MDAANLLKPMLARGELRCIGATTL EYRQHVEKD AFERRFQ V+V EP+V  T+SILRGLKERYESHHG++ITD+ALV AAKLADRYI  RF+PDKAID++DEAC+ +RVQLDS+PE ID+LER  LQL+VEATAL  E+D  SK RL +V+ E+ +I D+L PL +++QAEK +VNE  RL++K+ +LQ KI  A R++D+
Sbjct:  291 MDAANLLKPMLARGELRCIGATTLDEYRQHVEKDKAFERRFQQVMVKEPTVTDTVSILRGLKERYESHHGVQITDSALVTAAKLADRYITERFMPDKAIDIIDEACASVRVQLDSQPEAIDELERRQLQLQVEATALANEKDEVSKERLKKVQAELNTISDQLHPLIVQHQAEKERVNEVRRLKDKLQQLQLKIQKAERNQDL 493

[Close]

BLAST of EWM22023.1 vs. NCBI_GenBank
Match: gi|950882886|ref|XP_014524783.1| (AAA ATPase, partial [Blastocystis sp. subtype 4] >gi|902859394|gb|KNB41340.1| AAA ATPase, partial [Blastocystis sp. subtype 4])

HSP 1 Score: 278.87 bits (712), Expect = 9.370e-87
Identity = 137/202 (67.82%), Postives = 170/202 (84.16%), Query Frame = 0

Query:    1 MDAANLLKPMLARGELRCIGATTLKEYRQHVEKDPAFERRFQPVLVGEPSVPATISILRGLKERYESHHGIRITDAALVLAAKLADRYIQNRFLPDKAIDLVDEACSMIRVQLDSRPERIDQLERALLQLEVEATALQREEDAQSKARLTEVEKEMASIKDELQPLQLRYQAEKSQVNEQHRLQNKVLELQRKISVAMRDRD 202
            MDAANLLKPML+RGELR IGATTL+EY+++VEKD AFERRFQ V VGEPSV  T+SILRGLK+RYE  HG+RI D+ALVLAAKL++RYIQ+RFLPDKAIDLVDEAC+ IR+QLDS+PE ID+LER  LQLE+E TA++ E+D  SKARL +V++E+  +K++L+PL +R++ EK  VNE  RL+NKV E Q KI VA R+ D
Sbjct:  197 MDAANLLKPMLSRGELRVIGATTLEEYKKYVEKDAAFERRFQQVYVGEPSVEDTVSILRGLKDRYERFHGVRIDDSALVLAAKLSNRYIQDRFLPDKAIDLVDEACANIRMQLDSQPEEIDRLERKQLQLEIEQTAMENEKDEASKARLEKVKEELQEVKEQLKPLMMRHEKEKGVVNELRRLKNKVAETQNKIEVAKRNHD 398

[Close]

BLAST of EWM22023.1 vs. NCBI_GenBank
Match: gi|1173936280|gb|OQR87257.1| (heat shock protein [Achlya hypogyna])

HSP 1 Score: 281.952 bits (720), Expect = 1.989e-86
Identity = 139/203 (68.47%), Postives = 173/203 (85.22%), Query Frame = 0

Query:    1 MDAANLLKPMLARGELRCIGATTLKEYRQHVEKDPAFERRFQPVLVGEPSVPATISILRGLKERYESHHGIRITDAALVLAAKLADRYIQNRFLPDKAIDLVDEACSMIRVQLDSRPERIDQLERALLQLEVEATALQREEDAQSKARLTEVEKEMASIKDELQPLQLRYQAEKSQVNEQHRLQNKVLELQRKISVAMRDRDM 203
            MDAANLLKP+LARGELRCIGATTL+EYR++VEKD AFERRFQ VLV EPSVP TISILRGLK RYESHHG+RITD ALV AA LADRYI  RF+PDKAID +DEAC+ +RVQLDS+PE ID LER  LQL++EATAL +E+DA+SK RL  V++E+A+++D+L PL L++QAEK++V E  RL++K+ +LQ K++ A R +D+
Sbjct:  294 MDAANLLKPLLARGELRCIGATTLEEYRKYVEKDKAFERRFQQVLVSEPSVPDTISILRGLKARYESHHGVRITDGALVAAATLADRYITQRFMPDKAIDCIDEACANVRVQLDSQPEVIDTLERKQLQLQIEATALTKEKDARSKDRLKLVKQELAAVQDQLTPLVLKHQAEKAKVEEIRRLKDKLAQLQLKVAQAERRQDL 496

[Close]

BLAST of EWM22023.1 vs. NCBI_GenBank
Match: gi|1032152879|gb|OAO16272.1| (AAA ATPase domain-containing protein [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 281.952 bits (720), Expect = 2.186e-86
Identity = 139/202 (68.81%), Postives = 171/202 (84.65%), Query Frame = 0

Query:    1 MDAANLLKPMLARGELRCIGATTLKEYRQHVEKDPAFERRFQPVLVGEPSVPATISILRGLKERYESHHGIRITDAALVLAAKLADRYIQNRFLPDKAIDLVDEACSMIRVQLDSRPERIDQLERALLQLEVEATALQREEDAQSKARLTEVEKEMASIKDELQPLQLRYQAEKSQVNEQHRLQNKVLELQRKISVAMRDRD 202
            MDAANLLKPML+RGELR IGATTL+EY+++VEKD AFERRFQ V VGEPSV  T+SILRGLK+RYE +HG+RI DAALVLAAKL++RYIQ+RFLPDKAIDLVDEACS IRVQLDS+PE ID+LER  LQLE+E TA++ E+D  SKARL +V++E+  ++++L+PL LR++ EK  VNE  RL+NKV E Q KI +A R+ D
Sbjct:  293 MDAANLLKPMLSRGELRVIGATTLEEYKKYVEKDAAFERRFQQVYVGEPSVEDTVSILRGLKDRYERYHGVRIDDAALVLAAKLSNRYIQDRFLPDKAIDLVDEACSSIRVQLDSQPEEIDRLERKQLQLEIEETAMENEKDDASKARLKKVQEELEEVREQLKPLMLRHEKEKGAVNELRRLKNKVAETQNKIEMAKRNHD 494

[Close]

BLAST of EWM22023.1 vs. NCBI_GenBank
Match: gi|568053958|gb|ETM50765.1| (ATP-dependent chaperone ClpB [Phytophthora parasitica])

HSP 1 Score: 280.796 bits (717), Expect = 6.586e-86
Identity = 140/203 (68.97%), Postives = 172/203 (84.73%), Query Frame = 0

Query:    1 MDAANLLKPMLARGELRCIGATTLKEYRQHVEKDPAFERRFQPVLVGEPSVPATISILRGLKERYESHHGIRITDAALVLAAKLADRYIQNRFLPDKAIDLVDEACSMIRVQLDSRPERIDQLERALLQLEVEATALQREEDAQSKARLTEVEKEMASIKDELQPLQLRYQAEKSQVNEQHRLQNKVLELQRKISVAMRDRDM 203
            MDAANLLKPMLARGELRCIGATTL EYR+HVEKD AFERRFQ V+V EPSV  T+SILRGLKERYESHHG++I DA+LV AAKLADRYI+ RF+PDKAID++DEAC+ +RVQLDS+PE ID+LER  LQL+VEATAL +E+DA SK RL +V++E+  I+DEL PL LR++AEK++VNE  +L+ K+  LQ K   A R++D+
Sbjct:  291 MDAANLLKPMLARGELRCIGATTLDEYREHVEKDKAFERRFQQVMVKEPSVTDTVSILRGLKERYESHHGVQIMDASLVAAAKLADRYIKERFMPDKAIDIIDEACANVRVQLDSQPEVIDELERRQLQLQVEATALAKEKDALSKERLKKVQEELNKIQDELSPLILRHEAEKARVNEIRQLREKLQHLQLKAEQAERNQDL 493

[Close]

BLAST of EWM22023.1 vs. NCBI_GenBank
Match: gi|568023551|gb|ETL97606.1| (ATP-dependent chaperone ClpB [Phytophthora parasitica])

HSP 1 Score: 280.796 bits (717), Expect = 6.796e-86
Identity = 140/203 (68.97%), Postives = 172/203 (84.73%), Query Frame = 0

Query:    1 MDAANLLKPMLARGELRCIGATTLKEYRQHVEKDPAFERRFQPVLVGEPSVPATISILRGLKERYESHHGIRITDAALVLAAKLADRYIQNRFLPDKAIDLVDEACSMIRVQLDSRPERIDQLERALLQLEVEATALQREEDAQSKARLTEVEKEMASIKDELQPLQLRYQAEKSQVNEQHRLQNKVLELQRKISVAMRDRDM 203
            MDAANLLKPMLARGELRCIGATTL EYR+HVEKD AFERRFQ V+V EPSV  T+SILRGLKERYESHHG++I DA+LV AAKLADRYI+ RF+PDKAID++DEAC+ +RVQLDS+PE ID+LER  LQL+VEATAL +E+DA SK RL +V++E+  I+DEL PL LR++AEK++VNE  +L+ K+  LQ K   A R++D+
Sbjct:  291 MDAANLLKPMLARGELRCIGATTLDEYREHVEKDKAFERRFQQVMVKEPSVTDTVSILRGLKERYESHHGVQIMDASLVAAAKLADRYIKERFMPDKAIDIIDEACANVRVQLDSQPEVIDELERRQLQLQVEATALAKEKDALSKERLKKVQEELNKIQDELSPLILRHEAEKARVNEIRQLREKLQHLQLKAEQAERNQDL 493

[Close]

BLAST of EWM22023.1 vs. NCBI_GenBank
Match: gi|567994274|gb|ETL44434.1| (ATP-dependent chaperone ClpB [Phytophthora parasitica])

HSP 1 Score: 280.796 bits (717), Expect = 6.796e-86
Identity = 140/203 (68.97%), Postives = 172/203 (84.73%), Query Frame = 0

Query:    1 MDAANLLKPMLARGELRCIGATTLKEYRQHVEKDPAFERRFQPVLVGEPSVPATISILRGLKERYESHHGIRITDAALVLAAKLADRYIQNRFLPDKAIDLVDEACSMIRVQLDSRPERIDQLERALLQLEVEATALQREEDAQSKARLTEVEKEMASIKDELQPLQLRYQAEKSQVNEQHRLQNKVLELQRKISVAMRDRDM 203
            MDAANLLKPMLARGELRCIGATTL EYR+HVEKD AFERRFQ V+V EPSV  T+SILRGLKERYESHHG++I DA+LV AAKLADRYI+ RF+PDKAID++DEAC+ +RVQLDS+PE ID+LER  LQL+VEATAL +E+DA SK RL +V++E+  I+DEL PL LR++AEK++VNE  +L+ K+  LQ K   A R++D+
Sbjct:  291 MDAANLLKPMLARGELRCIGATTLDEYREHVEKDKAFERRFQQVMVKEPSVTDTVSILRGLKERYESHHGVQIMDASLVAAAKLADRYIKERFMPDKAIDIIDEACANVRVQLDSQPEVIDELERRQLQLQVEATALAKEKDALSKERLKKVQEELNKIQDELSPLILRHEAEKARVNEIRQLREKLQHLQLKAEQAERNQDL 493

The following BLAST results are available for this feature:

BLAST of EWM22023.1 vs. NCBI_GenBank

BLAST of EWM22023.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|585102433\|gb\|EWM22023.1\|	4.922e-145	100.00	heat shock protein 101, partial [Nannochloropsis g...	[more]
gi\|635367262\|emb\|CCI44512.1\|	2.650e-88	69.46	unnamed protein product [Albugo candida]	[more]
gi\|970655173\|gb\|KUF93371.1\|	7.984e-88	68.97	Regulatory-associated protein of mTOR [Phytophthor...	[more]
gi\|325179668\|emb\|CCA14066.1\|	9.298e-87	68.97	heat shock protein 101 putative [Albugo laibachii ...	[more]
gi\|950882886\|ref\|XP_014524783.1\|	9.370e-87	67.82	AAA ATPase, partial [Blastocystis sp. subtype 4] >...	[more]
gi\|1173936280\|gb\|OQR87257.1\|	1.989e-86	68.47	heat shock protein [Achlya hypogyna]	[more]
gi\|1032152879\|gb\|OAO16272.1\|	2.186e-86	68.81	AAA ATPase domain-containing protein [Blastocystis...	[more]
gi\|568053958\|gb\|ETM50765.1\|	6.586e-86	68.97	ATP-dependent chaperone ClpB [Phytophthora parasit...	[more]
gi\|568023551\|gb\|ETL97606.1\|	6.796e-86	68.97	ATP-dependent chaperone ClpB [Phytophthora parasit...	[more]
gi\|567994274\|gb\|ETL44434.1\|	6.796e-86	68.97	ATP-dependent chaperone ClpB [Phytophthora parasit...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna8679	rna8679	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications