EWM22035.1, cds8645 (CDS) Nannochloropsis gaditana

Overview
NameEWM22035.1
Unique Namecds8645
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:562656..563069 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22035.1
Productribosomal protein l32
Orig transcript idgnl|cribi|Naga_100052g38.1160.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:562656..563069 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR018263Ribosomal_L32e_CS
IPR001515Ribosomal_L32e
Homology
BLAST of EWM22035.1 vs. NCBI_GenBank
Match: gi|585102450|gb|EWM22035.1| (ribosomal protein l32 [Nannochloropsis gaditana])

HSP 1 Score: 278.1 bits (710), Expect = 1.027e-94
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0
Query:    1 MAKVTPLVKPKSIVKKRTKKFGRFQADRFMRIARTSWRKPKGIDGRARRRFKGSTLMPNIGYGSDAKTRNLLPNGFYKFVVNNPKEVELLLLHNRKYSAEIAHNVSSRKRKAIVEKAEQLGVKVTNAAAKLRAEEDA 137
            MAKVTPLVKPKSIVKKRTKKFGRFQADRFMRIARTSWRKPKGIDGRARRRFKGSTLMPNIGYGSDAKTRNLLPNGFYKFVVNNPKEVELLLLHNRKYSAEIAHNVSSRKRKAIVEKAEQLGVKVTNAAAKLRAEEDA
Sbjct:    1 MAKVTPLVKPKSIVKKRTKKFGRFQADRFMRIARTSWRKPKGIDGRARRRFKGSTLMPNIGYGSDAKTRNLLPNGFYKFVVNNPKEVELLLLHNRKYSAEIAHNVSSRKRKAIVEKAEQLGVKVTNAAAKLRAEEDA 137          
BLAST of EWM22035.1 vs. NCBI_GenBank
Match: gi|299473613|emb|CBN78007.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 207.608 bits (527), Expect = 8.759e-67
Identity = 101/137 (73.72%), Postives = 115/137 (83.94%), Query Frame = 0
Query:    1 MAKVTPLVKPKSIVKKRTKKFGRFQADRFMRIARTSWRKPKGIDGRARRRFKGSTLMPNIGYGSDAKTRNLLPNGFYKFVVNNPKEVELLLLHNRKYSAEIAHNVSSRKRKAIVEKAEQLGVKVTNAAAKLRAEEDA 137
            M  V PL K  ++VKKRTKKF R Q DRFMRI  +SWRKPKGIDGR RRRFKG   MPN+GYGSD +TRN+LPNGFYKF+V+N KE+ELLL+HNRKY+AEIAHNVSSRKRK IVE+A QL ++VTNA AKL AEEDA
Sbjct:    1 MGGVQPLNKV-NVVKKRTKKFARHQTDRFMRIKNSSWRKPKGIDGRVRRRFKGCLPMPNVGYGSDKRTRNILPNGFYKFLVHNVKELELLLMHNRKYAAEIAHNVSSRKRKEIVERAGQLHIRVTNAGAKLSAEEDA 136          
BLAST of EWM22035.1 vs. NCBI_GenBank
Match: gi|1072235647|gb|OEU20376.1| (ribosomal protein L32e [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 195.667 bits (496), Expect = 4.239e-62
Identity = 94/137 (68.61%), Postives = 113/137 (82.48%), Query Frame = 0
Query:    1 MAKVTPLVKPKSIVKKRTKKFGRFQADRFMRIARTSWRKPKGIDGRARRRFKGSTLMPNIGYGSDAKTRNLLPNGFYKFVVNNPKEVELLLLHNRKYSAEIAHNVSSRKRKAIVEKAEQLGVKVTNAAAKLRAEEDA 137
            MA  TP+ K K+IVKKRTKKF R Q+D+FMRI  +SWRKPKGIDGR RRRFKG+  MP+IGYGSD  TRN+ PNGF   VVNN  E+E+L++HNR Y+A +AH+VSSR RK IV++AEQL ++VTNAAAKLRAEEDA
Sbjct:    1 MAGPTPINK-KTIVKKRTKKFARHQSDQFMRIRDSSWRKPKGIDGRVRRRFKGAVPMPSIGYGSDKATRNICPNGFKSVVVNNVSELEMLMMHNRTYAATVAHSVSSRIRKEIVQRAEQLAIRVTNAAAKLRAEEDA 136          
BLAST of EWM22035.1 vs. NCBI_GenBank
Match: gi|219122924|ref|XP_002181786.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407062|gb|EEC47000.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 192.2 bits (487), Expect = 1.111e-60
Identity = 93/137 (67.88%), Postives = 113/137 (82.48%), Query Frame = 0
Query:    1 MAKVTPLVKPKSIVKKRTKKFGRFQADRFMRIARTSWRKPKGIDGRARRRFKGSTLMPNIGYGSDAKTRNLLPNGFYKFVVNNPKEVELLLLHNRKYSAEIAHNVSSRKRKAIVEKAEQLGVKVTNAAAKLRAEEDA 137
            MA  TPL K K+IVKKRTKKF R Q+D F+RIA +SWRKPKGIDGR RRRFKGS  MP+IGYGSD +TRN+ P+GF   V+NN  E+E+L++HNR Y+A +AH+VSSR R+ IVE+AEQL ++VTNA AKLRAEEDA
Sbjct:    1 MAGPTPLNK-KTIVKKRTKKFARHQSDLFLRIANSSWRKPKGIDGRVRRRFKGSIPMPSIGYGSDKQTRNVHPHGFKTVVINNVSELEMLMMHNRTYAATVAHSVSSRIRREIVERAEQLAIRVTNANAKLRAEEDA 136          
BLAST of EWM22035.1 vs. NCBI_GenBank
Match: gi|676379793|ref|XP_009033175.1| (hypothetical protein AURANDRAFT_36203 [Aureococcus anophagefferens] >gi|323456214|gb|EGB12081.1| hypothetical protein AURANDRAFT_36203 [Aureococcus anophagefferens])

HSP 1 Score: 191.815 bits (486), Expect = 1.240e-60
Identity = 92/135 (68.15%), Postives = 113/135 (83.70%), Query Frame = 0
Query:    1 MAKVTPLVKPKSIVKKRTKKFGRFQADRFMRIARTSWRKPKGIDGRARRRFKGSTLMPNIGYGSDAKTRNLLPNGFYKFVVNNPKEVELLLLHNRKYSAEIAHNVSSRKRKAIVEKAEQLGVKVTNAAAKLRAEE 135
            M KVT + KP +IVKKRTKKF R  ++RFM+I  +SWRK  GID R RRRFKG+  MP IGYGSD KTR+++P+GFYKFVVNN KE+ELL++HNR Y+AEIAH+VS +KRKAI+E+AEQL +KVTNA A+LRAEE
Sbjct:    1 MVKVTAMSKP-TIVKKRTKKFARHFSNRFMKIRNSSWRKIHGIDSRVRRRFKGTIPMPKIGYGSDKKTRHMMPSGFYKFVVNNVKELELLMMHNRTYAAEIAHSVSGQKRKAIIERAEQLNIKVTNANARLRAEE 134          
BLAST of EWM22035.1 vs. NCBI_GenBank
Match: gi|301105188|ref|XP_002901678.1| (60S ribosomal protein L32-1 [Phytophthora infestans T30-4] >gi|262100682|gb|EEY58734.1| 60S ribosomal protein L32-1 [Phytophthora infestans T30-4])

HSP 1 Score: 188.348 bits (477), Expect = 3.208e-59
Identity = 91/136 (66.91%), Postives = 113/136 (83.09%), Query Frame = 0
Query:    1 MAKVTPLVKPKSIVKKRTKKFGRFQADRFMRIARTSWRKPKGIDGRARRRFKGSTLMPNIGYGSDAKTRNLLPNGFYKFVVNNPKEVELLLLHNRKYSAEIAHNVSSRKRKAIVEKAEQLGVKVTNAAAKLRAEED 136
            M +VTP+V+PK IVKK+  KF R Q++RF R+   SWR+PKGIDGR RR+FKG+  MPNIGYGS+ KTR+LLPNGF KFVVNN  E+E+LL+HNRKY AEIAHNVS RKR+ I+E+AEQL V+VTN  A++RAEE+
Sbjct:    1 MVQVTPVVRPK-IVKKKVTKFKRHQSNRFKRVP-ESWRRPKGIDGRVRRKFKGAIKMPNIGYGSNKKTRHLLPNGFLKFVVNNVAELEVLLMHNRKYCAEIAHNVSGRKRREIIERAEQLNVRVTNPNARVRAEEN 134          
BLAST of EWM22035.1 vs. NCBI_GenBank
Match: gi|675209169|ref|XP_008913469.1| (hypothetical protein PPTG_17566 [Phytophthora parasitica INRA-310] >gi|566011926|gb|ETI34837.1| hypothetical protein F443_18736 [Phytophthora parasitica P1569] >gi|567949390|gb|ETK75122.1| hypothetical protein L915_18218 [Phytophthora parasitica] >gi|567978054|gb|ETL28548.1| hypothetical protein L916_18122 [Phytophthora parasitica] >gi|568007565|gb|ETL81802.1| hypothetical protein L917_17936 [Phytophthora parasitica] >gi|568037425|gb|ETM35010.1| hypothetical protein L914_18022 [Phytophthora parasitica] >gi|568086250|gb|ETN01142.1| hypothetical protein PPTG_17566 [Phytophthora parasitica INRA-310] >gi|570315632|gb|ETO63580.1| hypothetical protein F444_18734 [Phytophthora parasitica P1976] >gi|570939420|gb|ETP04677.1| hypothetical protein F441_18595 [Phytophthora parasitica CJ01A1] >gi|570969706|gb|ETP32825.1| hypothetical protein F442_18549 [Phytophthora parasitica P10297] >gi|970654552|gb|KUF92850.1| hypothetical protein AM588_10005267 [Phytophthora nicotianae] >gi|1214694159|gb|OWZ08282.1| 60S ribosomal protein L32-1 [Phytophthora megakarya])

HSP 1 Score: 188.348 bits (477), Expect = 3.747e-59
Identity = 91/136 (66.91%), Postives = 113/136 (83.09%), Query Frame = 0
Query:    1 MAKVTPLVKPKSIVKKRTKKFGRFQADRFMRIARTSWRKPKGIDGRARRRFKGSTLMPNIGYGSDAKTRNLLPNGFYKFVVNNPKEVELLLLHNRKYSAEIAHNVSSRKRKAIVEKAEQLGVKVTNAAAKLRAEED 136
            M +VTP+V+PK IVKK+  KF R Q++RF R+   SWR+PKGIDGR RR+FKG+  MPNIGYGS+ KTR+LLPNGF KFVVNN  E+E+LL+HNRKY AEIAHNVS RKR+ I+E+AEQL V+VTN  A++RAEE+
Sbjct:    1 MVQVTPVVRPK-IVKKKVTKFKRHQSNRFKRVP-ESWRRPKGIDGRVRRKFKGAIKMPNIGYGSNKKTRHLLPNGFLKFVVNNVAELEVLLMHNRKYCAEIAHNVSGRKRREIIERAEQLNVRVTNPNARVRAEEN 134          
BLAST of EWM22035.1 vs. NCBI_GenBank
Match: gi|693500244|emb|CEF97489.1| (Ribosomal protein L32e [Ostreococcus tauri] >gi|1199294248|gb|OUS49329.1| ribosomal protein L32e [Ostreococcus tauri])

HSP 1 Score: 187.578 bits (475), Expect = 6.207e-59
Identity = 91/133 (68.42%), Postives = 111/133 (83.46%), Query Frame = 0
Query:    4 VTPLVKPKSIVKKRTKKFGRFQADRFMRIARTSWRKPKGIDGRARRRFKGSTLMPNIGYGSDAKTRNLLPNGFYKFVVNNPKEVELLLLHNRKYSAEIAHNVSSRKRKAIVEKAEQLGVKVTNAAAKLRAEED 136
            VTPL+K K IVKKR   F ++Q+DR+ RIA TSWR+PKGID R RR+FKG   MPNIGYG+  KTR+LLPNGF KF V+N K+++LLL+HNRKY AEIAHNVS+  RKAIVE+A+QL VKV+NAAA+LR+EED
Sbjct:    2 VTPLIKHK-IVKKRKATFKKYQSDRYKRIANTSWRRPKGIDSRERRKFKGLPPMPNIGYGTAKKTRHLLPNGFLKFTVHNVKDLDLLLMHNRKYCAEIAHNVSTLHRKAIVERAKQLNVKVSNAAARLRSEED 133          
BLAST of EWM22035.1 vs. NCBI_GenBank
Match: gi|695379962|ref|XP_009516675.1| (hypothetical protein PHYSODRAFT_353635 [Phytophthora sojae] >gi|348689586|gb|EGZ29400.1| hypothetical protein PHYSODRAFT_353635 [Phytophthora sojae])

HSP 1 Score: 187.193 bits (474), Expect = 1.038e-58
Identity = 89/136 (65.44%), Postives = 113/136 (83.09%), Query Frame = 0
Query:    1 MAKVTPLVKPKSIVKKRTKKFGRFQADRFMRIARTSWRKPKGIDGRARRRFKGSTLMPNIGYGSDAKTRNLLPNGFYKFVVNNPKEVELLLLHNRKYSAEIAHNVSSRKRKAIVEKAEQLGVKVTNAAAKLRAEED 136
            M +VTP+++PK IVKK+  KF R Q++RF R+   SWR+PKGIDGR RR+FKG+  MPN+GYGS+ KTR+LLPNGF KFVVNN  E+E+LL+HNRKY AEIAHNVS RKR+ I+E+AEQL V+VTN  A++RAEE+
Sbjct:    1 MVQVTPVIRPK-IVKKKVTKFKRHQSNRFKRVP-ESWRRPKGIDGRVRRKFKGAIKMPNVGYGSNKKTRHLLPNGFLKFVVNNVAELEVLLMHNRKYCAEIAHNVSGRKRREIIERAEQLNVRVTNPNARVRAEEN 134          
BLAST of EWM22035.1 vs. NCBI_GenBank
Match: gi|168027728|ref|XP_001766381.1| (predicted protein [Physcomitrella patens] >gi|162682290|gb|EDQ68709.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 186.037 bits (471), Expect = 2.639e-58
Identity = 88/133 (66.17%), Postives = 114/133 (85.71%), Query Frame = 0
Query:    4 VTPLVKPKSIVKKRTKKFGRFQADRFMRIARTSWRKPKGIDGRARRRFKGSTLMPNIGYGSDAKTRNLLPNGFYKFVVNNPKEVELLLLHNRKYSAEIAHNVSSRKRKAIVEKAEQLGVKVTNAAAKLRAEED 136
            VTPLVK + ++KKR KKF R Q+DR +   +T+WR+PKGID R RR+FKG+TLMPNIGYGS+ KTR++LP+GF KF+V+N K+VELLL+HNRKYSAEIAHNVS+ KRKAIVE+A QL + +TN +A+LR++ED
Sbjct:    2 VTPLVK-RDVIKKRVKKFKRMQSDRKI-CVKTNWRRPKGIDSRVRRKFKGTTLMPNIGYGSNKKTRHVLPSGFVKFLVHNVKDVELLLMHNRKYSAEIAHNVSTLKRKAIVERAAQLNIALTNGSARLRSQED 132          
The following BLAST results are available for this feature:
BLAST of EWM22035.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102450|gb|EWM22035.1|1.027e-94100.00ribosomal protein l32 [Nannochloropsis gaditana][more]
gi|299473613|emb|CBN78007.1|8.759e-6773.72conserved unknown protein [Ectocarpus siliculosus][more]
gi|1072235647|gb|OEU20376.1|4.239e-6268.61ribosomal protein L32e [Fragilariopsis cylindrus C... [more]
gi|219122924|ref|XP_002181786.1|1.111e-6067.88predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|676379793|ref|XP_009033175.1|1.240e-6068.15hypothetical protein AURANDRAFT_36203 [Aureococcus... [more]
gi|301105188|ref|XP_002901678.1|3.208e-5966.9160S ribosomal protein L32-1 [Phytophthora infestan... [more]
gi|675209169|ref|XP_008913469.1|3.747e-5966.91hypothetical protein PPTG_17566 [Phytophthora para... [more]
gi|693500244|emb|CEF97489.1|6.207e-5968.42Ribosomal protein L32e [Ostreococcus tauri] >gi|11... [more]
gi|695379962|ref|XP_009516675.1|1.038e-5865.44hypothetical protein PHYSODRAFT_353635 [Phytophtho... [more]
gi|168027728|ref|XP_001766381.1|2.639e-5866.17predicted protein [Physcomitrella patens] >gi|1626... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8674rna8674Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications