EWM22044.1, cds8638 (CDS) Nannochloropsis gaditana

Overview
NameEWM22044.1
Unique Namecds8638
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:539955..541539 -
Alignment locationKK037249.1:539670..539809 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22044.1
ProductDNA polymerase subunit Cdc27
Orig transcript idgnl|cribi|Naga_100052g29.1169.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:539955..541539 -
KK037249.1supercontigKK037249.1:539670..539809 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006260DNA replication
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR019038DNA_polymerase_subunit_Cdc27
Homology
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BLAST of EWM22044.1 vs. NCBI_GenBank
Match: gi|585102459|gb|EWM22044.1| (DNA polymerase subunit Cdc27 [Nannochloropsis gaditana])

HSP 1 Score: 1169.84 bits (3025), Expect = 0.000e+0
Identity = 574/574 (100.00%), Postives = 574/574 (100.00%), Query Frame = 0 
Query:    1 MMGALVNLQHHEEDLSAWILDERKVITSRYLAQVLNIPTSSARRLLAAFYRRHKSEVLATFLLTGEQHVESRSQSSAGRGVLLLPECRVKAEKDHFFTRLEGVQIFSLHAKPNLSKKESEKKNESGLGQGGAKLWMEDLAMATELLDAASDAGESFRYNKLSGISSPEIFLSTAGAYSWRSLSNANASKPSVMASTGKDMKGANRSSTGSVKGKGQAISAQNFFERDPTAKQRSFIGADKNQSGPQVLQGKAAPGKTKDKGASATKGAESMAGSEERAEGAVTGSSNSRLSTSLSPVKCRDAKVNPGPGNTPSLKGSKPKRKIAEEREQSDSAESSAGEEEFLPGEKTASDRWRDEERKAARELVERQADERQRKKGKHIPKEDAGEDGALSEDTEEEEGGETIATGKKSKGLKKRGGIPGEARKRGVKGERRKDQSGKKGGERDEEEIPEAVHIEAVSGAMDTFVQRSPSKDAPQDGKRTKRVLVQKSFMDEKGYFVTENVWEDQEVDEPAGPPPAPASAAKTMPSMISLSTLIGNRCLSKSYWSKTSDPVIAQIGDFYFLCSRALADEQDKC 574
            MMGALVNLQHHEEDLSAWILDERKVITSRYLAQVLNIPTSSARRLLAAFYRRHKSEVLATFLLTGEQHVESRSQSSAGRGVLLLPECRVKAEKDHFFTRLEGVQIFSLHAKPNLSKKESEKKNESGLGQGGAKLWMEDLAMATELLDAASDAGESFRYNKLSGISSPEIFLSTAGAYSWRSLSNANASKPSVMASTGKDMKGANRSSTGSVKGKGQAISAQNFFERDPTAKQRSFIGADKNQSGPQVLQGKAAPGKTKDKGASATKGAESMAGSEERAEGAVTGSSNSRLSTSLSPVKCRDAKVNPGPGNTPSLKGSKPKRKIAEEREQSDSAESSAGEEEFLPGEKTASDRWRDEERKAARELVERQADERQRKKGKHIPKEDAGEDGALSEDTEEEEGGETIATGKKSKGLKKRGGIPGEARKRGVKGERRKDQSGKKGGERDEEEIPEAVHIEAVSGAMDTFVQRSPSKDAPQDGKRTKRVLVQKSFMDEKGYFVTENVWEDQEVDEPAGPPPAPASAAKTMPSMISLSTLIGNRCLSKSYWSKTSDPVIAQIGDFYFLCSRALADEQDKC
Sbjct:    1 MMGALVNLQHHEEDLSAWILDERKVITSRYLAQVLNIPTSSARRLLAAFYRRHKSEVLATFLLTGEQHVESRSQSSAGRGVLLLPECRVKAEKDHFFTRLEGVQIFSLHAKPNLSKKESEKKNESGLGQGGAKLWMEDLAMATELLDAASDAGESFRYNKLSGISSPEIFLSTAGAYSWRSLSNANASKPSVMASTGKDMKGANRSSTGSVKGKGQAISAQNFFERDPTAKQRSFIGADKNQSGPQVLQGKAAPGKTKDKGASATKGAESMAGSEERAEGAVTGSSNSRLSTSLSPVKCRDAKVNPGPGNTPSLKGSKPKRKIAEEREQSDSAESSAGEEEFLPGEKTASDRWRDEERKAARELVERQADERQRKKGKHIPKEDAGEDGALSEDTEEEEGGETIATGKKSKGLKKRGGIPGEARKRGVKGERRKDQSGKKGGERDEEEIPEAVHIEAVSGAMDTFVQRSPSKDAPQDGKRTKRVLVQKSFMDEKGYFVTENVWEDQEVDEPAGPPPAPASAAKTMPSMISLSTLIGNRCLSKSYWSKTSDPVIAQIGDFYFLCSRALADEQDKC 574
The following BLAST results are available for this feature:
BLAST of EWM22044.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585102459|gb|EWM22044.1|0.000e+0100.00DNA polymerase subunit Cdc27 [Nannochloropsis gadi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8665rna8665Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications