EWM22051.1, cds8631 (CDS) Nannochloropsis gaditana

Overview
NameEWM22051.1
Unique Namecds8631
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:526926..527547 -
Alignment locationKK037249.1:526666..526856 -
Alignment locationKK037249.1:526496..526595 -
Alignment locationKK037249.1:526173..526420 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22051.1
Productder1-like domain member 1
Orig transcript idgnl|cribi|Naga_100052g22.1176.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:526926..527547 -
KK037249.1supercontigKK037249.1:526666..526856 -
KK037249.1supercontigKK037249.1:526496..526595 -
KK037249.1supercontigKK037249.1:526173..526420 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006950response to stress
GO:0042221response to chemical
Vocabulary: Cellular Component
TermDefinition
GO:0005783endoplasmic reticulum
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR007599DER1
Homology
BLAST of EWM22051.1 vs. NCBI_GenBank
Match: gi|585102466|gb|EWM22051.1| (der1-like domain member 1 [Nannochloropsis gaditana])

HSP 1 Score: 791.186 bits (2042), Expect = 0.000e+0
Identity = 386/386 (100.00%), Postives = 386/386 (100.00%), Query Frame = 0
Query:    1 MWQEGAQAGKARWLWTLLLILLTTTSLQSTRLEAPQQPPSKLSLKRRSPCRSEATKRLKNRSYASSCGYVFDSHQSFGPPGKNGGQTNPVRWLARARGGVQPAQKKSKVKANGPAAQGNKIRYAKEASTKQKVKEWYQATPLVTRLHLTASLVLTGLGIIILDPAYFLLDPVRTITKAQIWRPFTAAAFLGPPSMSWVSNLYFLHQYGTALEKSQGTAQQLVFLLFNIGVLSVLGSLMGLPITSNALITAALHCLGRQDPLRDVNWMFSIKIKYWMLPFCLALVDMLQAQNPLAALPAALGILSGHMYYFLRQVWPKMGHRELLLAPEWLCKVLNRHNDDVIFQRRNKPLVTTGASSSEGESGVLPNLSSVLKKKSKVYKMKKTPS 386
            MWQEGAQAGKARWLWTLLLILLTTTSLQSTRLEAPQQPPSKLSLKRRSPCRSEATKRLKNRSYASSCGYVFDSHQSFGPPGKNGGQTNPVRWLARARGGVQPAQKKSKVKANGPAAQGNKIRYAKEASTKQKVKEWYQATPLVTRLHLTASLVLTGLGIIILDPAYFLLDPVRTITKAQIWRPFTAAAFLGPPSMSWVSNLYFLHQYGTALEKSQGTAQQLVFLLFNIGVLSVLGSLMGLPITSNALITAALHCLGRQDPLRDVNWMFSIKIKYWMLPFCLALVDMLQAQNPLAALPAALGILSGHMYYFLRQVWPKMGHRELLLAPEWLCKVLNRHNDDVIFQRRNKPLVTTGASSSEGESGVLPNLSSVLKKKSKVYKMKKTPS
Sbjct:    1 MWQEGAQAGKARWLWTLLLILLTTTSLQSTRLEAPQQPPSKLSLKRRSPCRSEATKRLKNRSYASSCGYVFDSHQSFGPPGKNGGQTNPVRWLARARGGVQPAQKKSKVKANGPAAQGNKIRYAKEASTKQKVKEWYQATPLVTRLHLTASLVLTGLGIIILDPAYFLLDPVRTITKAQIWRPFTAAAFLGPPSMSWVSNLYFLHQYGTALEKSQGTAQQLVFLLFNIGVLSVLGSLMGLPITSNALITAALHCLGRQDPLRDVNWMFSIKIKYWMLPFCLALVDMLQAQNPLAALPAALGILSGHMYYFLRQVWPKMGHRELLLAPEWLCKVLNRHNDDVIFQRRNKPLVTTGASSSEGESGVLPNLSSVLKKKSKVYKMKKTPS 386          
BLAST of EWM22051.1 vs. NCBI_GenBank
Match: gi|1210520594|dbj|GAX20587.1| (hypothetical protein FisN_3Hu563 [Fistulifera solaris])

HSP 1 Score: 177.563 bits (449), Expect = 5.512e-49
Identity = 83/173 (47.98%), Postives = 121/173 (69.94%), Query Frame = 0
Query:  169 LDPVRTITKAQIWRPFTAAAFLGPPSMSWVSNLYFLHQYGTALEKSQGTAQQLVFLLFNIGVLSVLGSLMGLPITSNALITAALHCLGRQDPLRDVNWMFSIKIKYWMLPFCLALVDMLQAQNPLAALPAALGILSGHMYYFLRQVWPKMGH-RELLLAPEWLCKVLNRHNDD 340
            LDP+R +   Q+WRP TAA FLGPPS+SW+ N Y+L QYG++LE++ GTAQ  VFLL  + +LS+  +L+G P  +N++IT+ LH L R  P + V W+    + YW LP+ L   D+LQAQ+P+AALP  +GIL+GH Y+F + +WPK+   ++ L+APE+L K L+  + D
Sbjct:  124 LDPMRVLYGLQLWRPITAATFLGPPSISWLLNGYYLFQYGSSLERAYGTAQHSVFLLSQLVLLSIFSTLVGQPFFANSMITSMLHVLSRSMPHQKVKWLV-FTVPYWSLPYGLMASDVLQAQSPMAALPHIMGILTGHFYHFHKHIWPKLEQGQDWLVAPEFLSKRLDPADKD 295          
BLAST of EWM22051.1 vs. NCBI_GenBank
Match: gi|944186099|dbj|BAT25218.1| (symbiotic PPC-localized Der [Nitzschia sp. IriIs04])

HSP 1 Score: 177.178 bits (448), Expect = 7.953e-49
Identity = 95/246 (38.62%), Postives = 152/246 (61.79%), Query Frame = 0
Query:   97 RGGVQPAQKKSKVK----ANGPAAQGNKIRYAKEASTKQKVKEWYQATPLVTRLHLTASLVLTGLGIII---LDPAYFLLDPVRTITKAQIWRPFTAAAFLGPPSMSWVSNLYFLHQYGTALEKSQGTAQQLVFLLFNIGVLSVLGSLMGLPITSNALITAALHCLGRQDPLRDVNWMFSIKIKYWMLPFCLALVDMLQAQNPLAALPAALGILSGHMYYFLRQVWPKMGHRELLLAPEWLCKVLN 335
            RGG +  ++ S +K      G    G+K++  K++   + ++ + +  P  TR ++TA  V T LG+++   L  +   LDP+RT+   +IWR FTAA++LG PS++W+ + Y+L QYG++LE++ G AQ +VFL   + +LS+L  L G P  + ++ITA LH L R  P + V W+    + YW LP+ L   D+LQAQ+  AA+P  LGI+SGH ++F R +WPK+G  + L AP +L K ++
Sbjct:   51 RGGAK--KRGSSIKPAKTVTGKKKVGDKLKAEKQSPVSKLLENYRKVLP-YTRAYITAIGVCTLLGVVLGEELSQSILALDPLRTLAGGEIWRFFTAASYLGTPSVTWLLDSYYLLQYGSSLEQAYGAAQYVVFLFSQLAILSILSILFGQPFFARSMITAMLHVLSRAMPKQQVRWLI-FTVPYWSLPYGLMATDVLQAQSAGAAVPHILGIISGHFFHFHRFIWPKVGGEDWLKAPAFLSKYVD 292          
BLAST of EWM22051.1 vs. NCBI_GenBank
Match: gi|224009223|ref|XP_002293570.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220970970|gb|EED89306.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 171.785 bits (434), Expect = 4.168e-48
Identity = 84/185 (45.41%), Postives = 121/185 (65.41%), Query Frame = 0
Query:  154 LTGLGIIILDP---AYFLLDPVRTITKAQIWRPFTAAAFLGPPSMSWVSNLYFLHQYGTALEKSQGTAQQLVFLLFNIGVLSVLGSLMGLPITSNALITAALHCLGRQDPLRDVNWMFSIKIKYWMLPFCLALVDMLQAQNPLAALPAALGILSGHMYYFLRQVWPKMGHRELLLAPEWLCKVLN 335
            +T LG+++ D        LDP+R +   ++WRPFTAA FLGPPS+ W+ N Y+L +YG++LE++ GT+Q ++FLL  IG LSV  +  G P  + ++IT+ LH L R  P + V W+    + YW LP+ L   D+LQA N  AALP  LGILSGH+YYF + VWPK+G  + L+ P +L + L+
Sbjct:    5 VTLLGLVLGDELSQGLLALDPIRVMYGLELWRPFTAACFLGPPSIGWLMNAYYLFEYGSSLERAFGTSQHMLFLLLQIGFLSVFSAFFGQPFFAQSVITSMLHVLSRSMPNQQVKWLI-FTVPYWTLPYGLMASDVLQAGNAAAALPHVLGILSGHLYYFHKNVWPKIGGEDWLVPPMFLQRKLD 188          
BLAST of EWM22051.1 vs. NCBI_GenBank
Match: gi|219109773|ref|XP_002176640.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411175|gb|EEC51103.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 173.711 bits (439), Expect = 1.873e-47
Identity = 90/229 (39.30%), Postives = 138/229 (60.26%), Query Frame = 0
Query:  125 KEASTKQKVKEWYQATPLVTRLHLTASLVLTGLGIII---LDPAYFLLDPVRTITKAQIWRPFTAAAFLGPPSMSWVSNLYFLHQYGTALEKSQGTAQQLVFLLFNIGVLSVLGSLMGLPITSNALITAALHCLGRQDPLRDVNWMFSIKIKYWMLPFCLALVDMLQAQNPLAALPAALGILSGHMYYFLRQVWPKMGHRELLLAPEWLCKVLNRHNDDVIFQRRNKPL 350
            K+++    ++ + +  PL TR+++T   V T + II       +   LDP R     + WRPFTAA+FLGP S+ W+ + Y+L +YG++LE++ GTAQ  VFL+  +  L+ L SL G P    ++ITA LH L R  P + V W+    + YW LP+ L   D+LQAQ+ +AALP  LGI+SGH Y+F + +WPK G  + L+AP++L + L+  + D   +  +K L
Sbjct:   86 KKSALSDTMQRYKRIRPL-TRIYITMVGVATLISIIFGEEFTQSLLALDPTRAFYGFEFWRPFTAASFLGPISIGWLMSGYYLFEYGSSLERAYGTAQHFVFLMSQVFGLTFLSSLTGQPFFGQSMITAMLHVLSRAMPHQKVKWLI-FTVPYWSLPYGLMASDVLQAQSAMAALPHILGIVSGHFYHFHKFIWPKKGGEDWLVAPDFLVRRLDPDSKDAARESVSKAL 312          
BLAST of EWM22051.1 vs. NCBI_GenBank
Match: gi|1072234022|gb|OEU18752.1| (hypothetical protein FRACYDRAFT_268432 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 171.785 bits (434), Expect = 2.047e-46
Identity = 86/204 (42.16%), Postives = 134/204 (65.69%), Query Frame = 0
Query:  135 EWYQATPLVTRLHLTASLVLTGLGIIILDP---AYFLLDPVRTITKAQIWRPFTAAAFLGPPSMSWVSNLYFLHQYGTALEKSQGTAQQLVFLLFNIGVLSVLGSLMGLPITSNALITAALHCLGRQDPLRDVNWMFSIKIKYWMLPFCLALVDMLQAQNPLAALPAALGILSGHMYYFLRQVWPKMGHRELLLAPEWLCKVLN 335
            ++Y+  P +TR ++T   + T LG+++ +    A   LDP+R +   +IWRPFTAA+FLG PS+SW+ + Y+LH+YG++LE++ G A+ L+FL   I +L++   ++G+P  +N++ITA L  L R  P   V W+  I + YW+LP+ L   D+LQAQ+  AA+P  LGIL GH Y+F R VWPK G  + L AP++L   ++
Sbjct:  123 DYYKEIPPLTRGYVTMIGLCTVLGLLLGEERAQAVLALDPMRLLHGMEIWRPFTAASFLGKPSISWLMSGYYLHEYGSSLERAYGPAEYLLFLCSQIFLLTIFSMVLGVPFFTNSIITAMLWVLSRAMPNEKVKWLV-ITVPYWVLPYGLMASDVLQAQSAAAAMPHILGILVGHFYHFHRFVWPKTGGEDWLRAPDFLVDAMD 325          
BLAST of EWM22051.1 vs. NCBI_GenBank
Match: gi|397639205|gb|EJK73444.1| (hypothetical protein THAOC_04933 [Thalassiosira oceanica])

HSP 1 Score: 163.31 bits (412), Expect = 2.347e-43
Identity = 95/260 (36.54%), Postives = 144/260 (55.38%), Query Frame = 0
Query:   90 VRWLARARGGVQPAQKKSKVKANGPAAQ-----GNKIRYAKEASTKQKVKEWYQATPLVTRLHLTASLVLTGLGIII---LDPAYFLLDPVRTITKAQIWRPFTAAAFLGPPSMSWVSNLYFLHQYGTALEKSQGTAQQLVFLLFNIGVLSVLGSLMGLPITSNALITAALHCLGRQDPLRDVNWMFSIKIKYWMLPFCLALVDMLQAQN-----PLAALPAALGILSGHMYYFLRQVWPKM-GHRELLLAPEWLCKVLN 335
            +R  A+ RGG   +   SK K      +      NK    K A + Q  K  Y+A   +TR+++T   ++T LG+++   +      LDP+R +   ++WRP TAA FLG PS+ W+ N Y+L  YG++LE+  GTAQ  +FL+  I +LS+  +  GLP  + ++IT+ LH L R  P + V W+    + YW LP+ L   D LQA +       AALP  LGILSGH+Y+F + +WP+  G  + L AP +L +  +
Sbjct:   57 LRGGAKKRGGRTASLHSSKDKGTTVTGKQKVKGSNKQDVKKSAVSDQLAK--YKAMLPLTRVYITMVGIVTLLGLVLGEEISQGLLALDPIRVMYGFELWRPITAACFLGSPSIGWLMNAYYLFTYGSSLERGVGTAQHFLFLMIQICLLSIFSAFFGLPFFAQSVITSMLHVLSRSMPTQPVKWLV-FTVPYWTLPYGLMASDALQAGSSGGSPAAAALPHILGILSGHIYFFHKSIWPRSEGAEDWLNAPAFLSRRFD 313          
BLAST of EWM22051.1 vs. NCBI_GenBank
Match: gi|873226636|emb|CEM20934.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 154.451 bits (389), Expect = 6.869e-40
Identity = 77/202 (38.12%), Postives = 125/202 (61.88%), Query Frame = 0
Query:  162 LDPAYFLLDPVRTITKAQIWRPFTAAAFLGPPSMSWVSNLYFLHQYGTALEKSQGTAQQLVFLLFNIGVLSVLGSLMGLPITSNALITAALHCLGRQDPLRDVNWMFSIKIKYWMLPFCLALVDMLQAQNPLAALPAALGILSGHMYYFLRQVWPKMGHRELLLAPEWLCKVLNRHNDDVIFQRRNKPLVTTGASSSEGESG 363
            +DP+ F L+  RT+   + WRPFTA AF G  ++S +S +YF+ QYG +LE+++G+A+QLVF+L  + +LS++G    LP T  A  +A ++   R++P   V    +I+++YW +PF  A++D+L AQ   AA+P  +GI +GH Y+F  Q++P MG    L AP WL + ++  +D  +++    PL   G S   G+ G
Sbjct:  140 VDPSVFALEWERTVRSFEFWRPFTAMAFQGDLTLSMISTMYFMWQYGQSLEEAKGSAEQLVFMLTQVILLSLIGFRFQLPFTGRAFSSALVYACSRREPFAMVPVFLNIRVQYWKVPFAQAVIDVLSAQKINAAIPHLMGIATGHFYHFFNQIYPGMGGYAWLSAPRWLRRRID--SDKHVYE----PLSAAG-SKRRGDQG 334          
BLAST of EWM22051.1 vs. NCBI_GenBank
Match: gi|397633608|gb|EJK71058.1| (hypothetical protein THAOC_07539 [Thalassiosira oceanica])

HSP 1 Score: 147.517 bits (371), Expect = 1.109e-38
Identity = 76/189 (40.21%), Postives = 114/189 (60.32%), Query Frame = 0
Query:  153 VLTGLGIII---LDPAYFLLDPVRTITKAQIWRPFTAAAFLGPPSMSWVSNLYFLHQYGTALEKSQGTAQQLVFLLFNIGVLSVLGSLMGLPITSNALITAALHCLGRQDPLRDVNWMFSIKIKYWMLPFCLALVDMLQAQN-----PLAALPAALGILSGHMYYFLRQVWPKM-GHRELLLAPEWLCK 332
            ++T LG+++   +      LDP+R +   ++WRP TAA FLG PS+ W+ N Y+L  YG++LE+  GTAQ  +FL+  I +LS+  +  GLP  + ++IT+ LH L R  P + V W+    + YW LP+ L   D LQA +       AALP  LGILSGH+Y+F + +WP+  G  + L AP +L +
Sbjct:    4 IVTLLGLVLGEEISQGLLALDPIRVMYGFELWRPITAACFLGSPSIGWLMNAYYLFTYGSSLERGVGTAQHFLFLMIQICILSIFSAFFGLPFFAQSVITSMLHVLSRSMPTQPVKWLV-FTVPYWTLPYGLMASDALQAGSSGGSPAAAALPHILGILSGHIYFFHKSIWPRSEGAEDWLNAPAFLSR 191          
BLAST of EWM22051.1 vs. NCBI_GenBank
Match: gi|298706524|emb|CBJ29494.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 149.058 bits (375), Expect = 1.098e-37
Identity = 93/274 (33.94%), Postives = 150/274 (54.74%), Query Frame = 0
Query:   93 LARARGGVQPAQKKSKVKANGPAAQGNKIRYAKEASTKQKVKEWYQATPLVTRLHLTASLVLTGLGIII---LDPA-YFLLDPVRTITKAQIWRPFTAAAFLGPPSMSWVSNLYFLHQYGTALEKSQGTAQQLVFLLFNIGVLSVLGSLMGLPITSNALITAALHCLGRQDPLRDVNWMFSIKIKYWMLPFCLALVDMLQAQ-NPLAALPAALGILSGHMYYFLRQVWPKMGHRELLLAPEWLCKVLNRHNDDVIFQRRNKPLVTTGASSSEGE 361
            +AR RGGV+ A  K+  + +      +        S    V   ++  P  TR ++   +V+T + + +   +D    F +D  RT+   ++WRP T+  +LGP SMSW++N+YFL Q+GT LE   GTA+Q++FLL    +L  LG L+G+P+ S +++ A  +   R DPL  V + F ++I  W LPF      +LQA+ +PLAA+P  +GIL GH+Y+F   V P MG +  L AP W+ + L+  ++    +  ++P    G     G+
Sbjct:   65 VARLRGGVKRATVKADDEDDDADENDDADAGPGALSALTGV---FKNMPPATRAYVLLLMVITAVDVSVGKAIDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFLGPLIGMPLLSTSMVAAHTYVSARMDPLGAVQFQF-LRIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLDGGDNPNFMETPDEPAAPRGRKIGAGK 334          
The following BLAST results are available for this feature:
BLAST of EWM22051.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102466|gb|EWM22051.1|0.000e+0100.00der1-like domain member 1 [Nannochloropsis gaditan... [more]
gi|1210520594|dbj|GAX20587.1|5.512e-4947.98hypothetical protein FisN_3Hu563 [Fistulifera sola... [more]
gi|944186099|dbj|BAT25218.1|7.953e-4938.62symbiotic PPC-localized Der [Nitzschia sp. IriIs04... [more]
gi|224009223|ref|XP_002293570.1|4.168e-4845.41predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|219109773|ref|XP_002176640.1|1.873e-4739.30predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072234022|gb|OEU18752.1|2.047e-4642.16hypothetical protein FRACYDRAFT_268432 [Fragilario... [more]
gi|397639205|gb|EJK73444.1|2.347e-4336.54hypothetical protein THAOC_04933 [Thalassiosira oc... [more]
gi|873226636|emb|CEM20934.1|6.869e-4038.12unnamed protein product [Vitrella brassicaformis C... [more]
gi|397633608|gb|EJK71058.1|1.109e-3840.21hypothetical protein THAOC_07539 [Thalassiosira oc... [more]
gi|298706524|emb|CBJ29494.1|1.098e-3733.94conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8658rna8658Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications