EWM22099.1, cds8600 (CDS) Nannochloropsis gaditana

Overview
NameEWM22099.1
Unique Namecds8600
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:459330..459400 -
Alignment locationKK037249.1:458953..459102 -
Alignment locationKK037249.1:458322..458793 -
Alignment locationKK037249.1:457725..458174 -
Alignment locationKK037249.1:457398..457556 -
Alignment locationKK037249.1:457028..457207 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22099.1
Productserine hydroxymethyltransferase
Orig transcript idgnl|cribi|Naga_100039g2.4437.mrna
GeneSHMT2
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:459330..459400 -
KK037249.1supercontigKK037249.1:458953..459102 -
KK037249.1supercontigKK037249.1:458322..458793 -
KK037249.1supercontigKK037249.1:457725..458174 -
KK037249.1supercontigKK037249.1:457398..457556 -
KK037249.1supercontigKK037249.1:457028..457207 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0042221response to chemical
GO:0009719response to endogenous stimulus
GO:0009056catabolic process
GO:0006544glycine metabolic process
GO:0006563L-serine metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0030170pyridoxal phosphate binding
GO:0004372glycine hydroxymethyltransferase activity
GO:0003824catalytic activity
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR015424PyrdxlP-dep_Trfase
IPR019798Ser_HO-MeTrfase_PLP_BS
IPR015422PyrdxlP-dep_Trfase_major_sub2
IPR015421PyrdxlP-dep_Trfase_major_sub1
IPR001085Ser_HO-MeTrfase
Homology
BLAST of EWM22099.1 vs. NCBI_GenBank
Match: gi|553179614|ref|XP_005852729.1| (glycine hydroxymethyltransferase [Nannochloropsis gaditana CCMP526] >gi|422295803|gb|EKU23102.1| glycine hydroxymethyltransferase [Nannochloropsis gaditana CCMP526] >gi|585102516|gb|EWM22099.1| serine hydroxymethyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 1022.31 bits (2642), Expect = 0.000e+0
Identity = 493/493 (100.00%), Postives = 493/493 (100.00%), Query Frame = 0
Query:    1 MLATMFLRRGSNTLALGRRMPILRSITSETKSWATSLNEPLKTTDPDLHAIIEQEKVRQRESLVLIASENFTSKSVFDALGSVMSNKYSEGYPGARYYGGNENIDKVESLCQQRALAAFNLDPARWGVNVQTLSGSPANFQAYTAVLAPHDRIMALDLPHGGHLSHGYQTDSKKISAVSIFFETFPYRLDERTGRIDYDKMEENAALFRPKLLVAGASAYARTIDYERMRKIADKHNAYLLSDMAHISGLVAAGAIPSPFPHSDIVTTTTHKSLRGPRGAMIFYRKGVRRVTKKGVEIPYDLEEKINFAVFPGLQGGPHNHTIAALATALKQAASPEFKKYQEQVLQNSKRLAETLTKAGYSLVSGGTDNHLVLVDLKPQQVDGARVERVMELANMAANKNTVPGDKSALTPGGIRIGCPALTSRGFTEEDFEQVGHFFDRAVKIAQEIKRETGPKIKDFKEALREGPGKHQALVDLKKDVVAFAQKFPTVGF 493
            MLATMFLRRGSNTLALGRRMPILRSITSETKSWATSLNEPLKTTDPDLHAIIEQEKVRQRESLVLIASENFTSKSVFDALGSVMSNKYSEGYPGARYYGGNENIDKVESLCQQRALAAFNLDPARWGVNVQTLSGSPANFQAYTAVLAPHDRIMALDLPHGGHLSHGYQTDSKKISAVSIFFETFPYRLDERTGRIDYDKMEENAALFRPKLLVAGASAYARTIDYERMRKIADKHNAYLLSDMAHISGLVAAGAIPSPFPHSDIVTTTTHKSLRGPRGAMIFYRKGVRRVTKKGVEIPYDLEEKINFAVFPGLQGGPHNHTIAALATALKQAASPEFKKYQEQVLQNSKRLAETLTKAGYSLVSGGTDNHLVLVDLKPQQVDGARVERVMELANMAANKNTVPGDKSALTPGGIRIGCPALTSRGFTEEDFEQVGHFFDRAVKIAQEIKRETGPKIKDFKEALREGPGKHQALVDLKKDVVAFAQKFPTVGF
Sbjct:    1 MLATMFLRRGSNTLALGRRMPILRSITSETKSWATSLNEPLKTTDPDLHAIIEQEKVRQRESLVLIASENFTSKSVFDALGSVMSNKYSEGYPGARYYGGNENIDKVESLCQQRALAAFNLDPARWGVNVQTLSGSPANFQAYTAVLAPHDRIMALDLPHGGHLSHGYQTDSKKISAVSIFFETFPYRLDERTGRIDYDKMEENAALFRPKLLVAGASAYARTIDYERMRKIADKHNAYLLSDMAHISGLVAAGAIPSPFPHSDIVTTTTHKSLRGPRGAMIFYRKGVRRVTKKGVEIPYDLEEKINFAVFPGLQGGPHNHTIAALATALKQAASPEFKKYQEQVLQNSKRLAETLTKAGYSLVSGGTDNHLVLVDLKPQQVDGARVERVMELANMAANKNTVPGDKSALTPGGIRIGCPALTSRGFTEEDFEQVGHFFDRAVKIAQEIKRETGPKIKDFKEALREGPGKHQALVDLKKDVVAFAQKFPTVGF 493          
BLAST of EWM22099.1 vs. NCBI_GenBank
Match: gi|299117602|emb|CBN75444.1| (serine hydroxymethyltransferase 2 [Ectocarpus siliculosus])

HSP 1 Score: 739.184 bits (1907), Expect = 0.000e+0
Identity = 351/474 (74.05%), Postives = 403/474 (85.02%), Query Frame = 0
Query:   21 PILRSITSETKSWATSLNEPLKTTDPDLHAIIEQEKVRQRESLVLIASENFTSKSVFDALGSVMSNKYSEGYPGARYYGGNENIDKVESLCQQRALAAFNLDPARWGVNVQTLSGSPANFQAYTAVLAPHDRIMALDLPHGGHLSHGYQTDSKKISAVSIFFETFPYRLDERTGRIDYDKMEENAALFRPKLLVAGASAYARTIDYERMRKIADKHNAYLLSDMAHISGLVAAGAIPSPFPHSDIVTTTTHKSLRGPRGAMIFYRKGVRRVTKKGVEIPYDLEEKINFAVFPGLQGGPHNHTIAALATALKQAASPEFKKYQEQVLQNSKRLAETLTKAGYSLVSGGTDNHLVLVDL-KPQQVDGARVERVMELANMAANKNTVPGDKSALTPGGIRIGCPALTSRGFTEEDFEQVGHFFDRAVKIAQEIKRETGPKIKDFKEALREGPGKHQALVDLKKDVVAFAQKFPTVGF 493
            P+ R ITSET+SWA ++N+PL+ TDPDL  I+E EKVRQR+SLVLIASENFTSKSV+DALGS+MSNKYSEGYPGARYYGGNE IDKVESLCQ+RAL AF+LDP  WGVNVQTLSGSPANFQAYTAVL PHDRIM+LDLPHGGHLSHGYQTD+KKIS VS F+ETFPYRLDE TG+IDYD M  NA LFRPKL+VAGASAY+R IDY RM+++AD   A+LLSDMAHISGLV+AG +PSPFP+SDIVTTTTHKSLRGPRGAMIFYRKG R  TKKG  I YD+E KINF+VFPGLQGGPHNHTIAALATALKQA +PE+  YQ+QV++NS  +AE L   GY LVSGGTDNHLVLVDL K   +DGARVE ++E+ NMA NKNTVPGDKSALTPGGIR+G PALTSRGFTEEDFEQV  FF R V +A+++  +TG KIK ++EAL +G  K+  +  L+ D+  FA+ FP +GF
Sbjct:    9 PLRRGITSETRSWALAMNKPLEETDPDLFDIMEHEKVRQRDSLVLIASENFTSKSVYDALGSIMSNKYSEGYPGARYYGGNEQIDKVESLCQKRALEAFDLDPELWGVNVQTLSGSPANFQAYTAVLQPHDRIMSLDLPHGGHLSHGYQTDTKKISMVSSFYETFPYRLDESTGQIDYDTMAANAKLFRPKLIVAGASAYSRNIDYARMKEVADASGAWLLSDMAHISGLVSAGVVPSPFPYSDIVTTTTHKSLRGPRGAMIFYRKGQRGTTKKGEPIMYDIESKINFSVFPGLQGGPHNHTIAALATALKQAKAPEYVAYQKQVVKNSAAMAEKLIADGYQLVSGGTDNHLVLVDLKKSSNIDGARVELMLEVVNMATNKNTVPGDKSALTPGGIRMGAPALTSRGFTEEDFEQVAAFFHRGVTLAKKVAADTG-KIKAYREALADGGSKYPEIKQLRDDINNFARTFPVIGF 481          
BLAST of EWM22099.1 vs. NCBI_GenBank
Match: gi|219111177|ref|XP_002177340.1| (serine hydroxymethyltransferase [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411875|gb|EEC51803.1| serine hydroxymethyltransferase [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 694.115 bits (1790), Expect = 0.000e+0
Identity = 337/475 (70.95%), Postives = 387/475 (81.47%), Query Frame = 0
Query:   21 PILRSITSETKSWATSLNEPLKTTDPDLHAIIEQEKVRQRESLVLIASENFTSKSVFDALGSVMSNKYSEGYPGARYYGGNENIDKVESLCQQRALAAFNLDPARWGVNVQTLSGSPANFQAYTAVLAPHDRIMALDLPHGGHLSHGYQTDSKKISAVSIFFETFPYRLDERTGRIDYDKMEENAALFRPKLLVAGASAYARTIDYERMRKIADKHNAYLLSDMAHISGLVAAGAIPSPFPHSDIVTTTTHKSLRGPRGAMIFYRKGVRRVTKKGVEIPYDLEEKINFAVFPGLQGGPHNHTIAALATALKQAASPEFKKYQEQVLQNSKRLAETLTKAGYSLVSGGTDNHLVLVDLKPQ-QVDGARVERVMELANMAANKNTVPGDKSALTPGGIRIGCPALTSRGFTEEDFEQVGHFFDRAVKIAQEIKR-ETGPKIKDFKEALREGPGKHQALVDLKKDVVAFAQKFPTVGF 493
            P +R I + T +    LN+ L  TDP+L  +IEQEK RQR SLVLIASENFTSK+V DALGSV+SNKYSEGYPGARYYGGNENID+VE LCQ+RAL AF+LDPA WGVNVQ+LSGSPANFQ YTA+L  H RI+ALDLPHGGHLSHGYQT +KKIS VS +FE+ PYRLDE TG IDYD+ME++A LFRPK++VAGASAY+R IDYER+RKIAD   AY++SDMAHISGLVAA  IPS F +SD+VTTTTHKSLRGPRGAMIFYRKG +   KKG  I YDLEEKINF VFPGLQGGPHNHTI ALAT LKQAA+ +F  YQ+QVL+NS RLAE L K GY+LVSGGTDNHLVL+D+K   ++DGARVER++ELA +A NKNTVPGD SAL PGGIR+G PALTSRGF E+DF +V HFFDRAVKIA ++K  + G K+K F+E    GP     LV L+ DV  FA  FPTVGF
Sbjct:   10 PAIRRIATRTFAAGADLNKTLLETDPELSQLIEQEKARQRNSLVLIASENFTSKAVLDALGSVLSNKYSEGYPGARYYGGNENIDQVELLCQKRALEAFHLDPAEWGVNVQSLSGSPANFQVYTALLETHARILALDLPHGGHLSHGYQTATKKISMVSRYFESMPYRLDESTGTIDYDQMEKSADLFRPKMIVAGASAYSRLIDYERIRKIADGVGAYVMSDMAHISGLVAAQVIPSCFEYSDVVTTTTHKSLRGPRGAMIFYRKGQKGTDKKGNPIMYDLEEKINFTVFPGLQGGPHNHTIGALATCLKQAATADFVVYQKQVLKNSSRLAEELNKLGYTLVSGGTDNHLVLIDVKSSAKIDGARVERILELACIATNKNTVPGDTSALMPGGIRMGTPALTSRGFKEDDFTKVAHFFDRAVKIAVKLKNTDQGAKLKGFREMCAVGPSVDADLVQLRHDVSEFACLFPTVGF 484          
BLAST of EWM22099.1 vs. NCBI_GenBank
Match: gi|168026603|ref|XP_001765821.1| (predicted protein [Physcomitrella patens] >gi|162682998|gb|EDQ69412.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 691.034 bits (1782), Expect = 0.000e+0
Identity = 330/463 (71.27%), Postives = 376/463 (81.21%), Query Frame = 0
Query:   31 KSWATSLNEPLKTTDPDLHAIIEQEKVRQRESLVLIASENFTSKSVFDALGSVMSNKYSEGYPGARYYGGNENIDKVESLCQQRALAAFNLDPARWGVNVQTLSGSPANFQAYTAVLAPHDRIMALDLPHGGHLSHGYQTDSKKISAVSIFFETFPYRLDERTGRIDYDKMEENAALFRPKLLVAGASAYARTIDYERMRKIADKHNAYLLSDMAHISGLVAAGAIPSPFPHSDIVTTTTHKSLRGPRGAMIFYRKGVRRVTKKGVEIPYDLEEKINFAVFPGLQGGPHNHTIAALATALKQAASPEFKKYQEQVLQNSKRLAETLTKAGYSLVSGGTDNHLVLVDLKPQQVDGARVERVMELANMAANKNTVPGDKSALTPGGIRIGCPALTSRGFTEEDFEQVGHFFDRAVKIAQEIKRETGPKIKDFKEALREGPGKHQALVDLKKDVVAFAQKFPTVGF 493
            K W   LN  +   DP++  IIE EK RQ + L LI SENFTS SV  A+GSVM+NKYSEGYPGARYYGGNE ID  E LCQ+RALAAF LDP +WGVNVQ+LSGSPANFQ YTA+L PH+RIMALDLPHGGHLSHGYQTD KKISAVSIFFET PYRLDE TG IDYD ME++A L+RPKL+VAGASAYAR  DY RMRK+ DK  A LL+DMAHISGLVAAG +PSPF  +D+VTTTTHKSLRGPRGAMIFYRKG++   KKG +I YD E+KIN AVFPGLQGGPHNHTIA LA ALKQAA+PEFK YQEQVL NS R A+ L   GY LVSGGT+NHLVLV+LKP+ VDG+RVERVMELA++AANKNTVPGD SAL PGGIR+G PALTSRGF EEDFE+V  FFDRAV IA ++K+ TG K+KDF+ A+   P     +  L+ +V  FA++FPT+GF
Sbjct:    2 KQWPKQLNADISEVDPEITDIIEHEKNRQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEFIDMAERLCQKRALAAFRLDPEKWGVNVQSLSGSPANFQVYTALLKPHERIMALDLPHGGHLSHGYQTDMKKISAVSIFFETMPYRLDESTGYIDYDTMEKSAVLYRPKLIVAGASAYARHYDYARMRKVCDKQKAILLADMAHISGLVAAGVVPSPFDFADVVTTTTHKSLRGPRGAMIFYRKGLKETNKKGEQIFYDYEDKINAAVFPGLQGGPHNHTIAGLAVALKQAATPEFKAYQEQVLSNSARFAKALMSQGYELVSGGTENHLVLVNLKPKGVDGSRVERVMELAHIAANKNTVPGDVSALVPGGIRMGTPALTSRGFIEEDFEKVAEFFDRAVGIAVKVKKSTGAKLKDFRAAVDTDPEIQAEIGKLRTEVEEFAKQFPTIGF 464          
BLAST of EWM22099.1 vs. NCBI_GenBank
Match: gi|545355889|ref|XP_005643716.1| (SHMT-domain-containing protein [Coccomyxa subellipsoidea C-169] >gi|384245679|gb|EIE19172.1| SHMT-domain-containing protein [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 689.878 bits (1779), Expect = 0.000e+0
Identity = 333/466 (71.46%), Postives = 384/466 (82.40%), Query Frame = 0
Query:   32 SWATSLNEPLKTTDPDLHAIIEQEKVRQRESLVLIASENFTSKSVFDALGSVMSNKYSEGYPGARYYGGNENIDKVESLCQQRALAAFNLDPARWGVNVQTLSGSPANFQAYTAVLAPHDRIMALDLPHGGHLSHGYQTDSKKISAVSIFFETFPYRLDERTGRIDYDKMEENAALFRPKLLVAGASAYARTIDYERMRKIADKHNAYLLSDMAHISGLVAAGAIPSPFPHSDIVTTTTHKSLRGPRGAMIFYRKGVRRVTKKGVEIPYDLEEKINFAVFPGLQGGPHNHTIAALATALKQAASPEFKKYQEQVLQNSKRLAETLTKAGYSLVSGGTDNHLVLVDLKPQQVDGARVERVMELANMAANKNTVPGDKSALTPGGIRIGCPALTSRGFTEEDFEQVGHFFDRAVKIAQEIKRE--TGPKIKDFKEAL--REGPGKHQALVDLKKDVVAFAQKFPTVGF 493
            +W   LN PL   DP+L  IIE EK RQ + L LI SENF S SV +A+GSVM+NKYSEGYPGARYYGGNE ID+ E LCQ+RAL AF LDP +WGVNVQ+LSGSPANFQ YTA+L PHDRIM LDLPHGGHLSHGYQTD+K+ISAVSIFFET  YRLDE TG IDYD++EENAALFRPKL+VAGASAYAR  DY RMR IADKH A+LL+DMAHISGLVAAG +PSPF ++D+VTTTTHKSLRGPRGAMIF+RKGVR V KKG EI YD+E+KINF+VFPGLQGGPHNHTI+ LA ALKQAA PEFK YQEQVL+NSK LA+ L K G+ LVSGGT+NHLVL DL+P+ VDG+RVERV+ELA++AANKNTVPGDKSAL PGG+R+G PALTSRGFTE DF++V  F DRAV+I  ++K +   GPK+KDFK  +   E P     + +LK  V  FA+ FPT+GF
Sbjct:   34 TWPKLLNAPLSEVDPELEDIIEHEKNRQWKGLELIPSENFVSSSVMEAVGSVMTNKYSEGYPGARYYGGNEFIDQAERLCQERALKAFRLDPEKWGVNVQSLSGSPANFQVYTALLNPHDRIMGLDLPHGGHLSHGYQTDTKRISAVSIFFETMAYRLDEETGIIDYDRLEENAALFRPKLIVAGASAYARHYDYPRMRAIADKHKAFLLADMAHISGLVAAGVVPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVRSVDKKGKEIMYDMEDKINFSVFPGLQGGPHNHTISGLACALKQAAGPEFKAYQEQVLKNSKALADGLQKRGFKLVSGGTENHLVLADLRPKGVDGSRVERVLELAHIAANKNTVPGDKSALVPGGLRMGAPALTSRGFTEADFDKVAEFVDRAVQITVDLKNKEGAGPKLKDFKAYVDSNEVP----EIKELKSAVEEFAKDFPTIGF 495          
BLAST of EWM22099.1 vs. NCBI_GenBank
Match: gi|695036639|ref|XP_009405786.1| (PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 686.026 bits (1769), Expect = 0.000e+0
Identity = 334/509 (65.62%), Postives = 394/509 (77.41%), Query Frame = 0
Query:    2 LATMFLRRGSNTLALGRRMPILR-------SITSETK--------SWATSLNEPLKTTDPDLHAIIEQEKVRQRESLVLIASENFTSKSVFDALGSVMSNKYSEGYPGARYYGGNENIDKVESLCQQRALAAFNLDPARWGVNVQTLSGSPANFQAYTAVLAPHDRIMALDLPHGGHLSHGYQTDSKKISAVSIFFETFPYRLDERTGRIDYDKMEENAALFRPKLLVAGASAYARTIDYERMRKIADKHNAYLLSDMAHISGLVAAGAIPSPFPHSDIVTTTTHKSLRGPRGAMIFYRKGVRRVTKKGVEIPYDLEEKINFAVFPGLQGGPHNHTIAALATALKQAASPEFKKYQEQVLQNSKRLAETLTKAGYSLVSGGTDNHLVLVDLKPQQVDGARVERVMELANMAANKNTVPGDKSALTPGGIRIGCPALTSRGFTEEDFEQVGHFFDRAVKIAQEIKRET--GPKIKDFKEALREGPGKHQALVDLKKDVVAFAQKFPTVGF 493
            +AT   R  S+T A  RR P  R       S+ SE          +W   LN PL+  DP++  IIE EK RQ + L LI SENFTS SV  A+GSVM NKYSEGYPGARYYGGNE ID  ESLCQ+RAL AF LDP++WGVNVQ+LSGSP+NFQ YTA+L PH+RIMALDLPHGGHLSHGYQTD+KKISAVSIFFET PYRLDE TG IDYD++E++A LFRPKL+VAGASAYAR  DYER+RK+ DK  A LL+DMAHISGLVAAG IPSPF ++DIVTTTTHKSLRGPRGAMIF+RKG++ + KKG E+ YD E+KIN AVFPGLQGGPHNHTI+ LA ALKQA +PEFK YQEQVL+N  + AE L + GY LVSGGTDNHLVLV+LK + +DG+RVE+V+ELA++AANKNTVPGD SA+ PGGIR+G PALTSRGF EEDF +V  FFD AVK+A +IK ET  G K+KDF   ++        +  L  +V  +A++FPT+GF
Sbjct:    3 MATALRRLNSSTSAAVRRHPFARGSLCSMSSLPSEAAYGKERSCVTWTKQLNAPLEVVDPEIAEIIELEKARQWKGLELIPSENFTSVSVMQAVGSVMINKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFGLDPSKWGVNVQSLSGSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCDKQKAILLADMAHISGLVAAGVIPSPFKYADIVTTTTHKSLRGPRGAMIFFRKGLKEINKKGQEVMYDFEDKINAAVFPGLQGGPHNHTISGLAVALKQATTPEFKAYQEQVLKNCAKFAECLVEKGYELVSGGTDNHLVLVNLKNKGIDGSRVEKVLELAHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVADFFDIAVKLALKIKAETKGGSKLKDFVATIQTDANIQYEISKLCHEVEDYAKQFPTIGF 511          
BLAST of EWM22099.1 vs. NCBI_GenBank
Match: gi|1210530516|dbj|GAX10843.1| (glycine hydroxymethyltransferase [Fistulifera solaris])

HSP 1 Score: 682.559 bits (1760), Expect = 0.000e+0
Identity = 333/477 (69.81%), Postives = 388/477 (81.34%), Query Frame = 0
Query:   19 RMPILRSITSETKSWATSLNEPLKTTDPDLHAIIEQEKVRQRESLVLIASENFTSKSVFDALGSVMSNKYSEGYPGARYYGGNENIDKVESLCQQRALAAFNLDPARWGVNVQTLSGSPANFQAYTAVLAPHDRIMALDLPHGGHLSHGYQTDSKKISAVSIFFETFPYRLDERTGRIDYDKMEENAALFRPKLLVAGASAYARTIDYERMRKIADKHNAYLLSDMAHISGLVAAGAIPSPFPHSDIVTTTTHKSLRGPRGAMIFYRKGVRRVTKKGVEIPYDLEEKINFAVFPGLQGGPHNHTIAALATALKQAASPEFKKYQEQVLQNSKRLAETLTKAGYSLVSGGTDNHLVLVDLK-PQQVDGARVERVMELANMAANKNTVPGDKSALTPGGIRIGCPALTSRGFTEEDFEQVGHFFDRAVKIAQEIKR-ETGPKIKDFKEALREGPGKHQALVDLKKDVVAFAQKFPTVGF 493
            R   LR ++S   S  +SLN  L  TDP+L  +IEQEK RQR SLVLIASENFTSK+V +ALGSV+SNKYSEGYPGARYYGGNENID+VE LCQQRAL AF+L+P  WGVNVQ+LSGSPANFQ YTA+L  HDRI++LDLPHGGHLSHGYQT +KKIS VS +FE+ PYRLDE TG IDYD+ME++A LFRPKL+VAGASAY+R IDYER+R IAD+  AY+L+DMAHISGL+AA  IPS FP +DIVTTTTHKSLRGPRGAMIFYRKG++   KKG  + YD EEKINFAVFPGLQGGPHNHTI ALAT LKQA++P F +YQ+QVL N  RLA+ L   GY LVSGGTDNHLVL+D+K  +Q+DGARVERV+ELA +A NKNT+PGD SAL PGGIR+G PALTSRG  E+DF +V HFFDRAV+IA ++K+ E G K+K F+E    GP     LV L+K+V  FA  FPTVGF
Sbjct:   18 RASFLRPLSS---SVGSSLNHSLAETDPELLQLIEQEKARQRNSLVLIASENFTSKAVLEALGSVLSNKYSEGYPGARYYGGNENIDQVELLCQQRALEAFHLNPDEWGVNVQSLSGSPANFQVYTALLNTHDRILSLDLPHGGHLSHGYQTPTKKISMVSRYFESMPYRLDESTGLIDYDQMEQSAELFRPKLIVAGASAYSRLIDYERIRAIADQVGAYVLADMAHISGLIAAEVIPSCFPWADIVTTTTHKSLRGPRGAMIFYRKGLKGNDKKGNPVFYDYEEKINFAVFPGLQGGPHNHTIGALATCLKQASTPGFVEYQKQVLANCARLAQELQTLGYHLVSGGTDNHLVLIDVKSSKQIDGARVERVLELACIATNKNTIPGDTSALMPGGIRMGTPALTSRGLMEDDFAKVAHFFDRAVQIALKLKQTEQGQKLKGFRELCAVGPSVDADLVQLRKEVSEFACSFPTVGF 491          
BLAST of EWM22099.1 vs. NCBI_GenBank
Match: gi|731311779|ref|XP_010671051.1| (PREDICTED: serine hydroxymethyltransferase 2, mitochondrial [Beta vulgaris subsp. vulgaris] >gi|870869789|gb|KMT20534.1| hypothetical protein BVRB_1g005180 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 679.863 bits (1753), Expect = 0.000e+0
Identity = 322/463 (69.55%), Postives = 379/463 (81.86%), Query Frame = 0
Query:   32 SWATSLNEPLKTTDPDLHAIIEQEKVRQRESLVLIASENFTSKSVFDALGSVMSNKYSEGYPGARYYGGNENIDKVESLCQQRALAAFNLDPARWGVNVQTLSGSPANFQAYTAVLAPHDRIMALDLPHGGHLSHGYQTDSKKISAVSIFFETFPYRLDERTGRIDYDKMEENAALFRPKLLVAGASAYARTIDYERMRKIADKHNAYLLSDMAHISGLVAAGAIPSPFPHSDIVTTTTHKSLRGPRGAMIFYRKGVRRVTKKGVEIPYDLEEKINFAVFPGLQGGPHNHTIAALATALKQAASPEFKKYQEQVLQNSKRLAETLTKAGYSLVSGGTDNHLVLVDLKPQQVDGARVERVMELANMAANKNTVPGDKSALTPGGIRIGCPALTSRGFTEEDFEQVGHFFDRAVKIAQEIKRET-GPKIKDFKEALREGPGKHQALVDLKKDVVAFAQKFPTVGF 493
            +W   LNEPL+  DP++  IIE EK RQ + L LI SENFTS SV  A+GSVM+NKYSEGYPGARYYGGNE ID  ESLCQ+RAL AF LDPA+WGVNVQ+LSGSPANFQAYTA+L PH+RIMALDLPHGGHLSHGYQTD+KKISAVSIFFET PYRLDE TG IDYD++E++AALFRPKL+VAGASAYAR  DY R+RK+ DK  A LL+DMAHISGLVAAG IPSPF ++DIVTTTTHKSLRGPRGAMIF+RKG++ + KKG E+ YD E+KIN AVFPGLQGGPHNHTIA LA ALKQA +PE+K YQEQVL N    A+ L   GY LVSGGTDNHLVLV+L+ + +DG+RVE+V+E  ++AANKNTVPGD SA+ PGGIR+G PALTSRGF EEDF +VG FFD AVK+A +IK +T G K+KDF E ++        +  L+ +V  +A++FPT+GF
Sbjct:   45 NWIKQLNEPLEVIDPEVADIIELEKSRQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFQLDPAKWGVNVQSLSGSPANFQAYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSAALFRPKLIVAGASAYARLYDYARIRKVCDKQKAILLADMAHISGLVAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFFRKGLKEINKKGQEVMYDFEDKINQAVFPGLQGGPHNHTIAGLAVALKQARTPEYKAYQEQVLSNCAAFAQKLADKGYHLVSGGTDNHLVLVNLRDKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMIPGGIRMGTPALTSRGFMEEDFAKVGEFFDDAVKLALKIKADTKGTKLKDFVETMQSNDKFQSEITKLRGEVEEYAKQFPTIGF 507          
BLAST of EWM22099.1 vs. NCBI_GenBank
Match: gi|1210519379|dbj|GAX21763.1| (glycine hydroxymethyltransferase [Fistulifera solaris])

HSP 1 Score: 679.478 bits (1752), Expect = 0.000e+0
Identity = 329/466 (70.60%), Postives = 382/466 (81.97%), Query Frame = 0
Query:   30 TKSWATSLNEPLKTTDPDLHAIIEQEKVRQRESLVLIASENFTSKSVFDALGSVMSNKYSEGYPGARYYGGNENIDKVESLCQQRALAAFNLDPARWGVNVQTLSGSPANFQAYTAVLAPHDRIMALDLPHGGHLSHGYQTDSKKISAVSIFFETFPYRLDERTGRIDYDKMEENAALFRPKLLVAGASAYARTIDYERMRKIADKHNAYLLSDMAHISGLVAAGAIPSPFPHSDIVTTTTHKSLRGPRGAMIFYRKGVRRVTKKGVEIPYDLEEKINFAVFPGLQGGPHNHTIAALATALKQAASPEFKKYQEQVLQNSKRLAETLTKAGYSLVSGGTDNHLVLVDLK-PQQVDGARVERVMELANMAANKNTVPGDKSALTPGGIRIGCPALTSRGFTEEDFEQVGHFFDRAVKIAQEIKR-ETGPKIKDFKEALREGPGKHQALVDLKKDVVAFAQKFPTVGF 493
            + S  +SLN  L  TDP+L  +IEQEK RQR SLVLIASENFTSK+V +ALGSV+SNKYSEGYPGARYYGGNENID+VE LCQ+RAL AF+L+P  WGVNVQ+LSGSPANFQ YTA+L  HDRI++LDLPHGGHLSHGYQT +KKIS VS +FE+ PYRLDE TG IDYD+ME++A LFRPKL+VAGASAY+R IDYER+R IAD+  AY+L+DMAHISGLVAA  IPS FP +DIVTTTTHKSLRGPRGAMIFYRKG++   KKG  + YD EEKINFAVFPGLQGGPHNHTI ALAT LKQA++P F +YQ+QVL N  RLA+ L   GY LVSGGTDNHLVL+D+K  + +DGARVERV+ELA +A NKNT+PGD SAL PGGIR+G PALTSRG  EEDF +V HFFDRAV+IA ++K+ E G K+K F+E    GP     LV L+K+V  FA  FPTVGF
Sbjct:   28 SSSVGSSLNHSLAETDPELLQLIEQEKARQRNSLVLIASENFTSKAVLEALGSVLSNKYSEGYPGARYYGGNENIDQVELLCQKRALQAFHLNPEEWGVNVQSLSGSPANFQVYTALLNTHDRILSLDLPHGGHLSHGYQTPTKKISMVSRYFESMPYRLDESTGLIDYDQMEKSAELFRPKLIVAGASAYSRLIDYERIRHIADQVGAYVLADMAHISGLVAAEVIPSCFPWADIVTTTTHKSLRGPRGAMIFYRKGLKGNDKKGNPVYYDYEEKINFAVFPGLQGGPHNHTIGALATCLKQASTPAFVEYQKQVLANCARLAQELQNLGYHLVSGGTDNHLVLIDVKSSKNIDGARVERVLELACIATNKNTIPGDTSALMPGGIRMGTPALTSRGLVEEDFVKVAHFFDRAVQIALKLKQTEQGQKLKGFRELCAVGPSVDADLVQLRKEVSEFACSFPTVGF 493          
BLAST of EWM22099.1 vs. NCBI_GenBank
Match: gi|702460430|ref|XP_010027978.1| (PREDICTED: serine hydroxymethyltransferase, mitochondrial [Eucalyptus grandis] >gi|629088383|gb|KCW54636.1| hypothetical protein EUGRSUZ_I00580 [Eucalyptus grandis])

HSP 1 Score: 679.478 bits (1752), Expect = 0.000e+0
Identity = 318/463 (68.68%), Postives = 377/463 (81.43%), Query Frame = 0
Query:   32 SWATSLNEPLKTTDPDLHAIIEQEKVRQRESLVLIASENFTSKSVFDALGSVMSNKYSEGYPGARYYGGNENIDKVESLCQQRALAAFNLDPARWGVNVQTLSGSPANFQAYTAVLAPHDRIMALDLPHGGHLSHGYQTDSKKISAVSIFFETFPYRLDERTGRIDYDKMEENAALFRPKLLVAGASAYARTIDYERMRKIADKHNAYLLSDMAHISGLVAAGAIPSPFPHSDIVTTTTHKSLRGPRGAMIFYRKGVRRVTKKGVEIPYDLEEKINFAVFPGLQGGPHNHTIAALATALKQAASPEFKKYQEQVLQNSKRLAETLTKAGYSLVSGGTDNHLVLVDLKPQQVDGARVERVMELANMAANKNTVPGDKSALTPGGIRIGCPALTSRGFTEEDFEQVGHFFDRAVKIAQEIKRET-GPKIKDFKEALREGPGKHQALVDLKKDVVAFAQKFPTVGF 493
            +W   LN PL+  DP++  IIE EK RQ + L LI SENFTS SV  A+GSVM+NKYSEGYPGARYYGGNE ID  ESLCQ+RAL AF LDPA+WGVNVQ+LSGSPANFQ YTA+L PHDRIMALDLPHGGHLSHGYQTD+KKISAVSIFFET PYRL+E TG IDYD+ME++A LFRPKL+VAGASAYAR  DY R+RK+ DK  A LL+DMAHISGLVAAG +PSPF ++D+VTTTTHKSLRGPRGAMIF+RKGV+ + K+G E+ YD E+KIN AVFPGLQGGPHNHTI  LA ALKQA +PE++ YQEQVL N  + A+TLT+ GY LVSGGT+NHLVLV+LK + +DG+RVE+VME  ++AANKNTVPGD SA+ PGGIR+G PALTSRGF EEDF +V  FFD AV +A +IK +T G K+KDF   ++  P     +  L+ DV  +A++FPT+GF
Sbjct:   48 TWPKQLNAPLEAVDPEVADIIELEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPAKWGVNVQSLSGSPANFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQMEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAILLADMAHISGLVAAGVVPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVLYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQVLSNCAKFAQTLTEKGYELVSGGTENHLVLVNLKNKGIDGSRVEKVMESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFIEEDFVKVAEFFDAAVGLAVKIKAQTKGTKLKDFLSTMQSSPDFQSGIAKLRHDVEEYAKQFPTIGF 510          
The following BLAST results are available for this feature:
BLAST of EWM22099.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553179614|ref|XP_005852729.1|0.000e+0100.00glycine hydroxymethyltransferase [Nannochloropsis ... [more]
gi|299117602|emb|CBN75444.1|0.000e+074.05serine hydroxymethyltransferase 2 [Ectocarpus sili... [more]
gi|219111177|ref|XP_002177340.1|0.000e+070.95serine hydroxymethyltransferase [Phaeodactylum tri... [more]
gi|168026603|ref|XP_001765821.1|0.000e+071.27predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|545355889|ref|XP_005643716.1|0.000e+071.46SHMT-domain-containing protein [Coccomyxa subellip... [more]
gi|695036639|ref|XP_009405786.1|0.000e+065.62PREDICTED: serine hydroxymethyltransferase, mitoch... [more]
gi|1210530516|dbj|GAX10843.1|0.000e+069.81glycine hydroxymethyltransferase [Fistulifera sola... [more]
gi|731311779|ref|XP_010671051.1|0.000e+069.55PREDICTED: serine hydroxymethyltransferase 2, mito... [more]
gi|1210519379|dbj|GAX21763.1|0.000e+070.60glycine hydroxymethyltransferase [Fistulifera sola... [more]
gi|702460430|ref|XP_010027978.1|0.000e+068.68PREDICTED: serine hydroxymethyltransferase, mitoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8627rna8627Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications