EWM22081.1, cds8599 (CDS) Nannochloropsis gaditana

Overview
NameEWM22081.1
Unique Namecds8599
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:455454..455567 +
Alignment locationKK037249.1:455754..455991 +
Alignment locationKK037249.1:456033..456268 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22081.1
ProductGrpE nucleotide exchange factor
Orig transcript idgnl|cribi|Naga_100039g3.4419.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:455454..455567 +
KK037249.1supercontigKK037249.1:455754..455991 +
KK037249.1supercontigKK037249.1:456033..456268 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006457protein folding
Vocabulary: Molecular Function
TermDefinition
GO:0030234enzyme regulator activity
GO:0005515protein binding
GO:0000166nucleotide binding
GO:0051087chaperone binding
GO:0000774adenyl-nucleotide exchange factor activity
GO:0042803protein homodimerization activity
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR009012GrpE_head
IPR013805GrpE_coiled_coil
IPR000740GrpE
Homology
BLAST of EWM22081.1 vs. NCBI_GenBank
Match: gi|585102498|gb|EWM22081.1| (GrpE nucleotide exchange factor [Nannochloropsis gaditana])

HSP 1 Score: 394.43 bits (1012), Expect = 8.340e-139
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0
Query:    1 MLLFNGVPTLMLHAQHKAPEQENASGTPGEEKAAGAAEDEQGKLIEKLMAENKELKDKVLYTLAEMENVRTIARRDAASAKQFALQSFAKQLLDVADNLNRALASVPKEALEEGGEAVEGVAMTDAQLQKVFAANQIVQYGKPGDKFDPHMHDALFEYEEEGREGGSVGQVLKTGYTLNGRVIRPAQVGTVKKAA 195
            MLLFNGVPTLMLHAQHKAPEQENASGTPGEEKAAGAAEDEQGKLIEKLMAENKELKDKVLYTLAEMENVRTIARRDAASAKQFALQSFAKQLLDVADNLNRALASVPKEALEEGGEAVEGVAMTDAQLQKVFAANQIVQYGKPGDKFDPHMHDALFEYEEEGREGGSVGQVLKTGYTLNGRVIRPAQVGTVKKAA
Sbjct:    1 MLLFNGVPTLMLHAQHKAPEQENASGTPGEEKAAGAAEDEQGKLIEKLMAENKELKDKVLYTLAEMENVRTIARRDAASAKQFALQSFAKQLLDVADNLNRALASVPKEALEEGGEAVEGVAMTDAQLQKVFAANQIVQYGKPGDKFDPHMHDALFEYEEEGREGGSVGQVLKTGYTLNGRVIRPAQVGTVKKAA 195          
BLAST of EWM22081.1 vs. NCBI_GenBank
Match: gi|953487981|emb|CEG47998.1| (mitochondrial protein translocase family [Plasmopara halstedii])

HSP 1 Score: 174.481 bits (441), Expect = 1.195e-51
Identity = 88/154 (57.14%), Postives = 114/154 (74.03%), Query Frame = 0
Query:   45 IEKLMAENKELKDKVLYTLAEMENVRTIARRDAASAKQFALQSFAKQLLDVADNLNRALASVPKEALE--EGGEAV----EGVAMTDAQLQKVFAANQIVQYGKPGDKFDPHMHDALFEYEEEGREGGSVGQVLKTGYTLNGRVIRPAQVGTVK 192
            +E+L A+NK++ D++L  LA+ ENVR I+R D  +A++FA+  FAK LLDV+DNL RA  SV  EALE  +  +A+    EGVAMT+ QLQKVF    I Q G  GDKFDP++HDALFEYE+  +E G +GQ++KTGYTLN RVIRPAQVG +K
Sbjct:   57 LEQLAAQNKDMNDRLLRALADAENVRRISRVDVNNAREFAISKFAKALLDVSDNLKRAHESVDVEALEPEKQLDAIKMLHEGVAMTETQLQKVFREFNINQVGAVGDKFDPNVHDALFEYEDATKEAGCIGQIMKTGYTLNDRVIRPAQVGVIK 210          
BLAST of EWM22081.1 vs. NCBI_GenBank
Match: gi|301105118|ref|XP_002901643.1| (Mitochondrial Protein Translocase (MPT) Family [Phytophthora infestans T30-4] >gi|262100647|gb|EEY58699.1| Mitochondrial Protein Translocase (MPT) Family [Phytophthora infestans T30-4])

HSP 1 Score: 172.555 bits (436), Expect = 5.871e-51
Identity = 90/180 (50.00%), Postives = 123/180 (68.33%), Query Frame = 0
Query:   19 PEQENASGTPGEEKAAGAAEDEQGKLIEKLMAENKELKDKVLYTLAEMENVRTIARRDAASAKQFALQSFAKQLLDVADNLNRALASV------PKEALEEGGEAVEGVAMTDAQLQKVFAANQIVQYGKPGDKFDPHMHDALFEYEEEGREGGSVGQVLKTGYTLNGRVIRPAQVGTVK 192
            P +E A+ T  EE+   +  ++  K +E+L  +NK++ D++L  LA+ ENVR I+R D  +A++FA+  FAK LLDV+DNL RA  S+      P++ L+      EGV MT+ QLQKVF   +I Q G  GDKFDP++HDALFEYE+  +E GS+GQ++KTGY LN RVIRPAQVG VK
Sbjct:   34 PAEETAAKTEAEEEPPLSDAEKLQKQVEELTTQNKDMNDRLLRALADAENVRRISRVDVNNAREFAISKFAKALLDVSDNLKRAHESIDVATLQPEKQLDAIEMLHEGVVMTEQQLQKVFREFKINQVGAVGDKFDPNVHDALFEYEDATKEAGSIGQLMKTGYLLNERVIRPAQVGVVK 213          
BLAST of EWM22081.1 vs. NCBI_GenBank
Match: gi|325181744|emb|CCA16200.1| (Mitochondrial Protein Translocase (MPT) Family puta [Albugo laibachii Nc14])

HSP 1 Score: 169.088 bits (427), Expect = 1.605e-49
Identity = 86/179 (48.04%), Postives = 116/179 (64.80%), Query Frame = 0
Query:   20 EQENASGTPGEEKAAGAAEDEQGKLIEKLMAENKELKDKVLYTLAEMENVRTIARRDAASAKQFALQSFAKQLLDVADNLNRALASV------PKEALEEGGEAVEGVAMTDAQLQKVFAANQIVQYGKPGDKFDPHMHDALFEYEEEGREGGSVGQVLKTGYTLNGRVIRPAQVGTVK 192
            E+E  S TP E        +   K +E+L +++K++ D +L  LA+ ENVR I+R+D  +A+ FA+  FA+ LLDVADNL RA  S+      P   LE      EGV MTD QLQKVF    I   G+ GD+FDP+MHDALFEYE++ +E G++GQ++K GY LN R+IRPAQVG +K
Sbjct:   35 EKEETSETPTESVKEEETLESLKKKVEELESDSKKINDHLLRALADAENVRRISRQDVQNARDFAISKFARNLLDVADNLQRAHESIKIEELHPDRTLEAIKSLHEGVVMTDQQLQKVFQEFNINPVGQVGDRFDPNMHDALFEYEDDTKEPGTIGQLMKRGYLLNSRIIRPAQVGVIK 213          
BLAST of EWM22081.1 vs. NCBI_GenBank
Match: gi|695389983|ref|XP_009519586.1| (hypothetical protein PHYSODRAFT_311338 [Phytophthora sojae] >gi|348684483|gb|EGZ24298.1| hypothetical protein PHYSODRAFT_311338 [Phytophthora sojae])

HSP 1 Score: 168.703 bits (426), Expect = 2.181e-49
Identity = 87/156 (55.77%), Postives = 114/156 (73.08%), Query Frame = 0
Query:   43 KLIEKLMAENKELKDKVLYTLAEMENVRTIARRDAASAKQFALQSFAKQLLDVADNLNRALASVPKEAL--EEGGEAV----EGVAMTDAQLQKVFAANQIVQYGKPGDKFDPHMHDALFEYEEEGREGGSVGQVLKTGYTLNGRVIRPAQVGTVK 192
            K ++ L A+NK++ D++L  LA+ ENVR I+R D  +A++FA+  FAK LLDV+DNL RA  S+  EAL  E+  +A+    EGV MT+ QLQKVF   +I Q G  GDKFDP++HDALFEYE+  +E GS+GQ++KTGY LN RVIRPAQVG VK
Sbjct:   61 KQVKDLEAKNKDMNDRLLRALADAENVRRISRVDVNNAREFAISKFAKALLDVSDNLKRAHESIDIEALQPEKQLDAIKVLHEGVVMTETQLQKVFREFKINQVGAIGDKFDPNVHDALFEYEDTTKEAGSIGQLMKTGYLLNERVIRPAQVGVVK 216          
BLAST of EWM22081.1 vs. NCBI_GenBank
Match: gi|675195535|ref|XP_008906652.1| (hypothetical protein PPTG_12394 [Phytophthora parasitica INRA-310] >gi|566021719|gb|ETI44630.1| hypothetical protein F443_10681 [Phytophthora parasitica P1569] >gi|567959024|gb|ETK84606.1| hypothetical protein L915_10448 [Phytophthora parasitica] >gi|567987748|gb|ETL38043.1| hypothetical protein L916_10341 [Phytophthora parasitica] >gi|568016967|gb|ETL91144.1| hypothetical protein L917_10280 [Phytophthora parasitica] >gi|568047377|gb|ETM44458.1| hypothetical protein L914_10311 [Phytophthora parasitica] >gi|568093049|gb|ETN07848.1| hypothetical protein PPTG_12394 [Phytophthora parasitica INRA-310] >gi|570325314|gb|ETO73262.1| hypothetical protein F444_10785 [Phytophthora parasitica P1976] >gi|570949181|gb|ETP14438.1| hypothetical protein F441_10631 [Phytophthora parasitica CJ01A1] >gi|570982360|gb|ETP42507.1| hypothetical protein F442_10594 [Phytophthora parasitica P10297])

HSP 1 Score: 167.933 bits (424), Expect = 4.041e-49
Identity = 86/156 (55.13%), Postives = 114/156 (73.08%), Query Frame = 0
Query:   43 KLIEKLMAENKELKDKVLYTLAEMENVRTIARRDAASAKQFALQSFAKQLLDVADNLNRALASVPKEALE--EGGEAV----EGVAMTDAQLQKVFAANQIVQYGKPGDKFDPHMHDALFEYEEEGREGGSVGQVLKTGYTLNGRVIRPAQVGTVK 192
            K +E+L  +NK++ D++L  LA+ ENVR I+R D  +A++FA+  FAK LLDV+DNL RA  S+   ALE  +  +A+    EGV MT+ QLQKVF   +I Q G+ GDKFDP++HDALFEYE+  +E GS+GQ++KTGY LN RVIRPAQVG VK
Sbjct:   61 KQVEELTTQNKDMNDRLLRALADAENVRRISRVDVNNAREFAISKFAKALLDVSDNLKRAHESIDIPALEPEKQLDAIKMLHEGVVMTEQQLQKVFREFKIHQVGEVGDKFDPNVHDALFEYEDATKEAGSIGQLMKTGYLLNDRVIRPAQVGVVK 216          
BLAST of EWM22081.1 vs. NCBI_GenBank
Match: gi|970631173|gb|KUF77871.1| (GrpE protein [Phytophthora nicotianae] >gi|970653043|gb|KUF91592.1| hypothetical protein AM588_10003218 [Phytophthora nicotianae])

HSP 1 Score: 167.933 bits (424), Expect = 5.303e-49
Identity = 86/156 (55.13%), Postives = 114/156 (73.08%), Query Frame = 0
Query:   43 KLIEKLMAENKELKDKVLYTLAEMENVRTIARRDAASAKQFALQSFAKQLLDVADNLNRALASVPKEALE--EGGEAV----EGVAMTDAQLQKVFAANQIVQYGKPGDKFDPHMHDALFEYEEEGREGGSVGQVLKTGYTLNGRVIRPAQVGTVK 192
            K +E+L  +NK++ D++L  LA+ ENVR I+R D  +A++FA+  FAK LLDV+DNL RA  S+   ALE  +  +A+    EGV MT+ QLQKVF   +I Q G+ GDKFDP++HDALFEYE+  +E GS+GQ++KTGY LN RVIRPAQVG VK
Sbjct:   61 KQVEELTTQNKDMNDRLLRALADAENVRRISRVDVNNAREFAISKFAKALLDVSDNLKRAHESIDIPALEPEKQLDAIKMLHEGVVMTEQQLQKVFREFKIHQVGEVGDKFDPNVHDALFEYEDATKEAGSIGQLMKTGYLLNDRVIRPAQVGVVK 216          
BLAST of EWM22081.1 vs. NCBI_GenBank
Match: gi|1214713697|gb|OWZ24580.1| (Mitochondrial Protein Translocase [Phytophthora megakarya])

HSP 1 Score: 166.777 bits (421), Expect = 1.199e-48
Identity = 96/192 (50.00%), Postives = 125/192 (65.10%), Query Frame = 0
Query:   24 ASGTP---GEEKAAGAAEDEQ-----------GKL---IEKLMAENKELKDKVLYTLAEMENVRTIARRDAASAKQFALQSFAKQLLDVADNLNRALASVPKEALE--EGGEAV----EGVAMTDAQLQKVFAANQIVQYGKPGDKFDPHMHDALFEYEEEGREGGSVGQVLKTGYTLNGRVIRPAQVGTVK 192
             S TP    +EK+  AA+DE             KL   ++ L A NK++ D++L  LA+ ENVR I+R D  +A++FA+  FAK LLDV+DNL RA  S+   ALE  +  +A+    EGV MT+ QLQKVF   +I Q G  GDKFDP++HDALFEYE+  +E GS+GQ++KTGY LN RVIRPAQVG VK
Sbjct:   21 VSQTPVRFADEKSEEAAKDESKSEEPVELSETDKLQQQVDDLTATNKDMNDRLLRALADAENVRRISRVDVNNAREFAISKFAKALLDVSDNLTRAHESIDVAALEPEKQLDAIKILHEGVVMTENQLQKVFREFKINQVGAVGDKFDPNVHDALFEYEDATKEAGSIGQLMKTGYLLNERVIRPAQVGVVK 212          
BLAST of EWM22081.1 vs. NCBI_GenBank
Match: gi|347360849|emb|CCC55868.1| (RxLR effector candidate precursor, partial [Hyaloperonospora arabidopsidis Emoy2])

HSP 1 Score: 165.622 bits (418), Expect = 2.246e-48
Identity = 84/156 (53.85%), Postives = 115/156 (73.72%), Query Frame = 0
Query:   43 KLIEKLMAENKELKDKVLYTLAEMENVRTIARRDAASAKQFALQSFAKQLLDVADNLNRALASVPKEALE--EGGEAV----EGVAMTDAQLQKVFAANQIVQYGKPGDKFDPHMHDALFEYEEEGREGGSVGQVLKTGYTLNGRVIRPAQVGTVK 192
            K +E+L  +NK++ D++L  LA+ ENVR I+R D ++A++FA+  FAK LLDV+DNL RA  S+  +ALE  +  +A+    EGV MT++QLQKVF   +I Q G  GDKFDP++HDALFEY++  +E GS+GQ++K GY LN RVIRPAQVG VK
Sbjct:   46 KEVEELSVKNKDMNDRLLRALADAENVRRISRIDVSNAREFAISKFAKALLDVSDNLKRAHESIDVDALEPEKQLDAIKVLHEGVVMTESQLQKVFREFKINQVGAVGDKFDPNVHDALFEYDDATKEAGSIGQLMKPGYLLNERVIRPAQVGVVK 201          
BLAST of EWM22081.1 vs. NCBI_GenBank
Match: gi|635366228|emb|CCI45419.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 164.851 bits (416), Expect = 3.894e-48
Identity = 88/182 (48.35%), Postives = 118/182 (64.84%), Query Frame = 0
Query:   17 KAPEQENASGTPGEEKAAGAAEDEQGKLIEKLMAENKELKDKVLYTLAEMENVRTIARRDAASAKQFALQSFAKQLLDVADNLNRALASVPKEALEEGG--EAV----EGVAMTDAQLQKVFAANQIVQYGKPGDKFDPHMHDALFEYEEEGREGGSVGQVLKTGYTLNGRVIRPAQVGTVK 192
            +  E+E AS  P E       E    K +++L  ++K++ D +L  LA+ ENVR I+R+D  +A+ FA+  FAK LLDVADNL RA  S   + L   G  EA+    EGV MTD QLQKVF    I   G+ GD+FDP+MHDALFEYE++ +E G++GQ++K GY LN R+IRPAQVG +K
Sbjct:   11 RNSEKEEASELPNESVKEETVE-ALKKRVDELELDSKKINDHLLRALADAENVRRISRQDVQNARDFAISKFAKSLLDVADNLQRAHTSTKIDTLHPDGNLEAIKSLHEGVVMTDQQLQKVFQEFNINPVGQVGDRFDPNMHDALFEYEDDTKEPGTIGQLMKRGYLLNSRIIRPAQVGVIK 191          
The following BLAST results are available for this feature:
BLAST of EWM22081.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102498|gb|EWM22081.1|8.340e-139100.00GrpE nucleotide exchange factor [Nannochloropsis g... [more]
gi|953487981|emb|CEG47998.1|1.195e-5157.14mitochondrial protein translocase family [Plasmopa... [more]
gi|301105118|ref|XP_002901643.1|5.871e-5150.00Mitochondrial Protein Translocase (MPT) Family [Ph... [more]
gi|325181744|emb|CCA16200.1|1.605e-4948.04Mitochondrial Protein Translocase (MPT) Family put... [more]
gi|695389983|ref|XP_009519586.1|2.181e-4955.77hypothetical protein PHYSODRAFT_311338 [Phytophtho... [more]
gi|675195535|ref|XP_008906652.1|4.041e-4955.13hypothetical protein PPTG_12394 [Phytophthora para... [more]
gi|970631173|gb|KUF77871.1|5.303e-4955.13GrpE protein [Phytophthora nicotianae] >gi|9706530... [more]
gi|1214713697|gb|OWZ24580.1|1.199e-4850.00Mitochondrial Protein Translocase [Phytophthora me... [more]
gi|347360849|emb|CCC55868.1|2.246e-4853.85RxLR effector candidate precursor, partial [Hyalop... [more]
gi|635366228|emb|CCI45419.1|3.894e-4848.35unnamed protein product [Albugo candida][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8626rna8626Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications