EWM22121.1, cds8538 (CDS) Nannochloropsis gaditana

Overview
NameEWM22121.1
Unique Namecds8538
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:285050..285187 -
Alignment locationKK037249.1:284270..284854 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22121.1
Productputative rna-binding protein eif1ad
Orig transcript idgnl|cribi|Naga_100060g31.5489.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:285050..285187 -
KK037249.1supercontigKK037249.1:284270..284854 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0003723RNA binding
GO:0003743translation initiation factor activity
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR006196RNA-binding_domain_S1_IF1
IPR001253TIF_eIF-1A
Homology
BLAST of EWM22121.1 vs. NCBI_GenBank
Match: gi|585102541|gb|EWM22121.1| (putative rna-binding protein eif1ad [Nannochloropsis gaditana])

HSP 1 Score: 490.73 bits (1262), Expect = 1.924e-175
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0
Query:    1 MSGAGRKSAYRKSVTEEVLHSFPEPNVAAGERVARVVQSRGGNILQVNVAPDPQSGEDENSGSLALLPTKFRKLIWVKRGDFVIVSGTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWPVVFSEPAEQGPAHKGEGRSELEHGANQRVEPEGGGQEKCQNGNPTRERVGREGDGNVSAFQVEDGDSTGSQYESDEEDYSDLHVNTNRLAKAHLYVDDDEEEEEAEADKFDEGVE 240
            MSGAGRKSAYRKSVTEEVLHSFPEPNVAAGERVARVVQSRGGNILQVNVAPDPQSGEDENSGSLALLPTKFRKLIWVKRGDFVIVSGTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWPVVFSEPAEQGPAHKGEGRSELEHGANQRVEPEGGGQEKCQNGNPTRERVGREGDGNVSAFQVEDGDSTGSQYESDEEDYSDLHVNTNRLAKAHLYVDDDEEEEEAEADKFDEGVE
Sbjct:    1 MSGAGRKSAYRKSVTEEVLHSFPEPNVAAGERVARVVQSRGGNILQVNVAPDPQSGEDENSGSLALLPTKFRKLIWVKRGDFVIVSGTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWPVVFSEPAEQGPAHKGEGRSELEHGANQRVEPEGGGQEKCQNGNPTRERVGREGDGNVSAFQVEDGDSTGSQYESDEEDYSDLHVNTNRLAKAHLYVDDDEEEEEAEADKFDEGVE 240          
BLAST of EWM22121.1 vs. NCBI_GenBank
Match: gi|553187438|ref|XP_005854611.1| (rna binding protein, partial [Nannochloropsis gaditana CCMP526] >gi|553192989|ref|XP_005855688.1| rna binding protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293380|gb|EKU20680.1| rna binding protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294451|gb|EKU21751.1| rna binding protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 400.979 bits (1029), Expect = 1.178e-140
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0
Query:   46 QVNVAPDPQSGEDENSGSLALLPTKFRKLIWVKRGDFVIVSGTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWPVVFSEPAEQGPAHKGEGRSELEHGANQRVEPEGGGQEKCQNGNPTRERVGREGDGNVSAFQVEDGDSTGSQYESDEEDYSDLHVNTNRLAKAHLYVDDDEEEEEAEADKFDEGVE 240
            QVNVAPDPQSGEDENSGSLALLPTKFRKLIWVKRGDFVIVSGTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWPVVFSEPAEQGPAHKGEGRSELEHGANQRVEPEGGGQEKCQNGNPTRERVGREGDGNVSAFQVEDGDSTGSQYESDEEDYSDLHVNTNRLAKAHLYVDDDEEEEEAEADKFDEGVE
Sbjct:    1 QVNVAPDPQSGEDENSGSLALLPTKFRKLIWVKRGDFVIVSGTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWPVVFSEPAEQGPAHKGEGRSELEHGANQRVEPEGGGQEKCQNGNPTRERVGREGDGNVSAFQVEDGDSTGSQYESDEEDYSDLHVNTNRLAKAHLYVDDDEEEEEAEADKFDEGVE 195          
BLAST of EWM22121.1 vs. NCBI_GenBank
Match: gi|219122250|ref|XP_002181463.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407449|gb|EEC47386.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 133.265 bits (334), Expect = 5.566e-35
Identity = 85/236 (36.02%), Postives = 121/236 (51.27%), Query Frame = 0
Query:    1 MSGAGRKSAYRKSVTEEVLHSFPEPNVAAGERVARVVQSRGGNILQVNVAPDPQSGEDENSGS----LALLPTKFRKLIWVKRGDFVIV-SGTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWPVVFSEPAEQGPAHKGEGRSELEHGANQRVEPEGGGQEKCQNGNPTRERVGREGDGNVSAFQVEDGDSTGSQYESDEEDYSDLHVNTNRLAKAHLYVDDDEEEEEAE 231
            M+G GR++ YRK +T+ +LH FPEP     ERVA++V +RG N   + ++ +    E+ ++ +    LA+LPTKFRKL+W+KR DFVIV + T  +      + G V+FM+ HILYKEQ+KHL+   +WP              G      +       + E    E C +         R  D    A  +EDG    + Y++D+    DL VNTNRLA   L V D  E E  E
Sbjct:    1 MAGLGRRTHYRKHLTDSILHDFPEP--LGDERVAKIVATRGSNQFDIVLSVEKSLPEEHSATTRPCHLAILPTKFRKLVWLKRNDFVIVQTATDAEGADRKNDSGGVRFMITHILYKEQIKHLQSNELWP--------------GWDTEFTQDSIESSPQNEITTNEDCSSAGV------RSFDEEDQASPIEDGIVYATGYDTDD----DLFVNTNRLAS--LQVQDSSETESDE 208          
BLAST of EWM22121.1 vs. NCBI_GenBank
Match: gi|1173946207|gb|OQR94761.1| (hypothetical protein ACHHYP_00935 [Achlya hypogyna])

HSP 1 Score: 130.954 bits (328), Expect = 3.394e-34
Identity = 71/130 (54.62%), Postives = 91/130 (70.00%), Query Frame = 0
Query:    1 MSGAGRKSAYRKSVTEEVLHSFPEPNVAAGERVARVVQSRGGNILQVNVAPDPQSGEDENSGSLALLPTKFRKLIWVKRGDFVIVSGTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWPVVFSE 130
            MSGAGRKS YRK VT++VL+  PEP   AGE + +V   RGGN+ +V    +  +GE     SLA+LPTK+RKLIWV+RGDF+IVSG   D      +KG V+F VEHILYK+Q+K+LK + +WP VF E
Sbjct:    1 MSGAGRKSGYRKGVTQDVLYGEPEPE--AGEVIVQVKSLRGGNLFEV----ETPTGEV----SLAMLPTKYRKLIWVRRGDFLIVSGADDD------KKGAVQFSVEHILYKDQIKNLKSKNLWPEVFVE 114          
BLAST of EWM22121.1 vs. NCBI_GenBank
Match: gi|301117640|ref|XP_002906548.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262107897|gb|EEY65949.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 129.798 bits (325), Expect = 7.555e-34
Identity = 72/139 (51.80%), Postives = 90/139 (64.75%), Query Frame = 0
Query:    1 MSGAGRKSAYRKSVTEEVLHSFPEPNVAAGERVARVVQSRGGNILQVNVAPDPQSGEDENSG-SLALLPTKFRKLIWVKRGDFVIVS-GTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWPVVFSEPAEQGPA 137
            MSG+GRKSAYRK VT+ VL+  PEP     E + RV   RG N+ +V         ED N   S+ +LPTKFRKLIWVKRGDF+IV  G   +  TA G+KG V  +VEHILYKEQ+K+LK + +WP  F + +  GPA
Sbjct:    1 MSGSGRKSAYRKGVTKRVLYGDPEPK--ENELIVRVTALRGSNLFEV---------EDANGAKSVTMLPTKFRKLIWVKRGDFLIVGEGDGGETTTATGKKGAVTSIVEHILYKEQIKNLKRKELWPATFDD-SPTGPA 127          
BLAST of EWM22121.1 vs. NCBI_GenBank
Match: gi|298710392|emb|CBJ25456.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 129.413 bits (324), Expect = 5.194e-33
Identity = 65/125 (52.00%), Postives = 89/125 (71.20%), Query Frame = 0
Query:    1 MSGAGRKSAYRKSVTEEVLHSFPEPNVAAGERVARVVQSRGGNILQVNVAPDPQSGEDENSGSLALLPTKFRKLIWVKRGDFVIVSGTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWP 125
            M+G GR++ YRKSVT++ L+S PEP     E +      RG NI+++ +A    +GE     SLALLPT+FRKLIWVKRGD++I S ++ DF+T+AGE GKV+  VEHIL K+Q+KHLK + +WP
Sbjct:    1 MAGVGRRTLYRKSVTDDYLNSTPEP--GENEEIVLAQAPRGSNIIEIMLA----NGEP----SLALLPTRFRKLIWVKRGDYLITSTSAGDFETSAGETGKVRHRVEHILNKDQIKHLKKRELWP 115          
BLAST of EWM22121.1 vs. NCBI_GenBank
Match: gi|669156184|ref|XP_008613654.1| (hypothetical protein SDRG_09494 [Saprolegnia diclina VS20] >gi|669156186|ref|XP_008613655.1| hypothetical protein, variant [Saprolegnia diclina VS20] >gi|530734726|gb|EQC32968.1| hypothetical protein SDRG_09494 [Saprolegnia diclina VS20] >gi|530734727|gb|EQC32969.1| hypothetical protein, variant [Saprolegnia diclina VS20])

HSP 1 Score: 127.102 bits (318), Expect = 8.497e-33
Identity = 68/130 (52.31%), Postives = 86/130 (66.15%), Query Frame = 0
Query:    1 MSGAGRKSAYRKSVTEEVLHSFPEPNVAAGERVARVVQSRGGNILQVNVAPDPQSGEDENSGSLALLPTKFRKLIWVKRGDFVIVSGTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWPVVFSE 130
            MSGAGRKS YRK VT++VL+  PEP   AGE + +V   RGGN+ +V   P    G       LA+LPTK+RKLIW++RGDF+IVSG          +KG V F VEHILYK+Q+K+LK + +WP VF E
Sbjct:    1 MSGAGRKSGYRKGVTQDVLYGEPEP--VAGELIVQVKSLRGGNLFEVE-TPTGDKG-------LAMLPTKYRKLIWIRRGDFLIVSGADD------AKKGAVNFSVEHILYKDQIKNLKAKDLWPDVFVE 114          
BLAST of EWM22121.1 vs. NCBI_GenBank
Match: gi|566017755|gb|ETI40666.1| (hypothetical protein F443_14028 [Phytophthora parasitica P1569] >gi|567955132|gb|ETK80765.1| hypothetical protein L915_13672 [Phytophthora parasitica] >gi|567983795|gb|ETL34180.1| hypothetical protein L916_13571 [Phytophthora parasitica] >gi|568013289|gb|ETL87466.1| hypothetical protein L917_13378 [Phytophthora parasitica] >gi|568043370|gb|ETM40661.1| hypothetical protein L914_13466 [Phytophthora parasitica] >gi|570945166|gb|ETP10423.1| hypothetical protein F441_13956 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 125.946 bits (315), Expect = 2.067e-32
Identity = 70/138 (50.72%), Postives = 89/138 (64.49%), Query Frame = 0
Query:    1 MSGAGRKSAYRKSVTEEVLHSFPEPNVAAGERVARVVQSRGGNILQVNVAPDPQSGEDENSGSLALLPTKFRKLIWVKRGDFVIVS-GTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWPVVFSEPAEQGPA 137
            MSG+GRKSAYRK VT+ VL+  PEP     E + RV   RG N+ +V  A   +S        + +LPTKFRKLIWVKRGDF+IV  G   +  TA G+KG V  +VEHILYKEQ+K+LK + +WP  F + +  GPA
Sbjct:    1 MSGSGRKSAYRKGVTKRVLYGDPEPK--ENELIVRVTALRGSNLFEVVDANGVKS--------VTMLPTKFRKLIWVKRGDFLIVGEGDGGEATTATGKKGAVTSIVEHILYKEQIKNLKRKELWPAAFDD-SPTGPA 127          
BLAST of EWM22121.1 vs. NCBI_GenBank
Match: gi|570321405|gb|ETO69353.1| (hypothetical protein F444_14060 [Phytophthora parasitica P1976])

HSP 1 Score: 125.946 bits (315), Expect = 2.377e-32
Identity = 70/138 (50.72%), Postives = 89/138 (64.49%), Query Frame = 0
Query:    1 MSGAGRKSAYRKSVTEEVLHSFPEPNVAAGERVARVVQSRGGNILQVNVAPDPQSGEDENSGSLALLPTKFRKLIWVKRGDFVIVS-GTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWPVVFSEPAEQGPA 137
            MSG+GRKSAYRK VT+ VL+  PEP     E + RV   RG N+ +V  A   +S        + +LPTKFRKLIWVKRGDF+IV  G   +  TA G+KG V  +VEHILYKEQ+K+LK + +WP  F + +  GPA
Sbjct:    1 MSGSGRKSAYRKGVTKRVLYGDPEPK--ENELIVRVTALRGSNLFEVVDANGVKS--------VTMLPTKFRKLIWVKRGDFLIVGEGDGGEATTATGKKGAVTSIVEHILYKEQIKNLKRKELWPAAFDD-SPTGPA 127          
BLAST of EWM22121.1 vs. NCBI_GenBank
Match: gi|695375644|ref|XP_009515592.1| (hypothetical protein PHYSODRAFT_474031 [Phytophthora sojae] >gi|348688503|gb|EGZ28317.1| hypothetical protein PHYSODRAFT_474031 [Phytophthora sojae])

HSP 1 Score: 125.946 bits (315), Expect = 2.475e-32
Identity = 69/141 (48.94%), Postives = 88/141 (62.41%), Query Frame = 0
Query:    1 MSGAGRKSAYRKSVTEEVLHSFPEPNVAAGERVARVVQSRGGNILQVNVAPDPQSGEDENSGSLALLPTKFRKLIWVKRGDFVIVS-GTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWPVVFSEPAEQGPAHKG 140
            MSGAGRKSAYRK VT  VL+  PEP     E + RV   RG N+ +V  A        E + S+ +LPTKFRKLIWVKRGDF+IV  G   +  TA G+KG V  +VEHILYK+Q+K+LK + +WP  F + +      +G
Sbjct:    1 MSGAGRKSAYRKGVTSRVLYGDPEPK--ENELIVRVTALRGSNLFEVVDA--------EGAKSVTMLPTKFRKLIWVKRGDFLIVGEGDGGEATTAKGKKGAVTSIVEHILYKDQIKNLKRKDLWPAAFDDSSASTAWTQG 131          
The following BLAST results are available for this feature:
BLAST of EWM22121.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102541|gb|EWM22121.1|1.924e-175100.00putative rna-binding protein eif1ad [Nannochlorops... [more]
gi|553187438|ref|XP_005854611.1|1.178e-140100.00rna binding protein, partial [Nannochloropsis gadi... [more]
gi|219122250|ref|XP_002181463.1|5.566e-3536.02predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1173946207|gb|OQR94761.1|3.394e-3454.62hypothetical protein ACHHYP_00935 [Achlya hypogyna... [more]
gi|301117640|ref|XP_002906548.1|7.555e-3451.80conserved hypothetical protein [Phytophthora infes... [more]
gi|298710392|emb|CBJ25456.1|5.194e-3352.00conserved unknown protein [Ectocarpus siliculosus][more]
gi|669156184|ref|XP_008613654.1|8.497e-3352.31hypothetical protein SDRG_09494 [Saprolegnia dicli... [more]
gi|566017755|gb|ETI40666.1|2.067e-3250.72hypothetical protein F443_14028 [Phytophthora para... [more]
gi|570321405|gb|ETO69353.1|2.377e-3250.72hypothetical protein F444_14060 [Phytophthora para... [more]
gi|695375644|ref|XP_009515592.1|2.475e-3248.94hypothetical protein PHYSODRAFT_474031 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8565rna8565Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications