EWM22121.1, cds8538 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22121.1 vs. NCBI_GenBank
Match: gi|585102541|gb|EWM22121.1| (putative rna-binding protein eif1ad [Nannochloropsis gaditana]) HSP 1 Score: 490.73 bits (1262), Expect = 1.924e-175 Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0
Query: 1 MSGAGRKSAYRKSVTEEVLHSFPEPNVAAGERVARVVQSRGGNILQVNVAPDPQSGEDENSGSLALLPTKFRKLIWVKRGDFVIVSGTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWPVVFSEPAEQGPAHKGEGRSELEHGANQRVEPEGGGQEKCQNGNPTRERVGREGDGNVSAFQVEDGDSTGSQYESDEEDYSDLHVNTNRLAKAHLYVDDDEEEEEAEADKFDEGVE 240
MSGAGRKSAYRKSVTEEVLHSFPEPNVAAGERVARVVQSRGGNILQVNVAPDPQSGEDENSGSLALLPTKFRKLIWVKRGDFVIVSGTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWPVVFSEPAEQGPAHKGEGRSELEHGANQRVEPEGGGQEKCQNGNPTRERVGREGDGNVSAFQVEDGDSTGSQYESDEEDYSDLHVNTNRLAKAHLYVDDDEEEEEAEADKFDEGVE
Sbjct: 1 MSGAGRKSAYRKSVTEEVLHSFPEPNVAAGERVARVVQSRGGNILQVNVAPDPQSGEDENSGSLALLPTKFRKLIWVKRGDFVIVSGTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWPVVFSEPAEQGPAHKGEGRSELEHGANQRVEPEGGGQEKCQNGNPTRERVGREGDGNVSAFQVEDGDSTGSQYESDEEDYSDLHVNTNRLAKAHLYVDDDEEEEEAEADKFDEGVE 240
BLAST of EWM22121.1 vs. NCBI_GenBank
Match: gi|553187438|ref|XP_005854611.1| (rna binding protein, partial [Nannochloropsis gaditana CCMP526] >gi|553192989|ref|XP_005855688.1| rna binding protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293380|gb|EKU20680.1| rna binding protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294451|gb|EKU21751.1| rna binding protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 400.979 bits (1029), Expect = 1.178e-140 Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0
Query: 46 QVNVAPDPQSGEDENSGSLALLPTKFRKLIWVKRGDFVIVSGTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWPVVFSEPAEQGPAHKGEGRSELEHGANQRVEPEGGGQEKCQNGNPTRERVGREGDGNVSAFQVEDGDSTGSQYESDEEDYSDLHVNTNRLAKAHLYVDDDEEEEEAEADKFDEGVE 240
QVNVAPDPQSGEDENSGSLALLPTKFRKLIWVKRGDFVIVSGTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWPVVFSEPAEQGPAHKGEGRSELEHGANQRVEPEGGGQEKCQNGNPTRERVGREGDGNVSAFQVEDGDSTGSQYESDEEDYSDLHVNTNRLAKAHLYVDDDEEEEEAEADKFDEGVE
Sbjct: 1 QVNVAPDPQSGEDENSGSLALLPTKFRKLIWVKRGDFVIVSGTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWPVVFSEPAEQGPAHKGEGRSELEHGANQRVEPEGGGQEKCQNGNPTRERVGREGDGNVSAFQVEDGDSTGSQYESDEEDYSDLHVNTNRLAKAHLYVDDDEEEEEAEADKFDEGVE 195
BLAST of EWM22121.1 vs. NCBI_GenBank
Match: gi|219122250|ref|XP_002181463.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407449|gb|EEC47386.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 133.265 bits (334), Expect = 5.566e-35 Identity = 85/236 (36.02%), Postives = 121/236 (51.27%), Query Frame = 0
Query: 1 MSGAGRKSAYRKSVTEEVLHSFPEPNVAAGERVARVVQSRGGNILQVNVAPDPQSGEDENSGS----LALLPTKFRKLIWVKRGDFVIV-SGTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWPVVFSEPAEQGPAHKGEGRSELEHGANQRVEPEGGGQEKCQNGNPTRERVGREGDGNVSAFQVEDGDSTGSQYESDEEDYSDLHVNTNRLAKAHLYVDDDEEEEEAE 231
M+G GR++ YRK +T+ +LH FPEP ERVA++V +RG N + ++ + E+ ++ + LA+LPTKFRKL+W+KR DFVIV + T + + G V+FM+ HILYKEQ+KHL+ +WP G + + E E C + R D A +EDG + Y++D+ DL VNTNRLA L V D E E E
Sbjct: 1 MAGLGRRTHYRKHLTDSILHDFPEP--LGDERVAKIVATRGSNQFDIVLSVEKSLPEEHSATTRPCHLAILPTKFRKLVWLKRNDFVIVQTATDAEGADRKNDSGGVRFMITHILYKEQIKHLQSNELWP--------------GWDTEFTQDSIESSPQNEITTNEDCSSAGV------RSFDEEDQASPIEDGIVYATGYDTDD----DLFVNTNRLAS--LQVQDSSETESDE 208
BLAST of EWM22121.1 vs. NCBI_GenBank
Match: gi|1173946207|gb|OQR94761.1| (hypothetical protein ACHHYP_00935 [Achlya hypogyna]) HSP 1 Score: 130.954 bits (328), Expect = 3.394e-34 Identity = 71/130 (54.62%), Postives = 91/130 (70.00%), Query Frame = 0
Query: 1 MSGAGRKSAYRKSVTEEVLHSFPEPNVAAGERVARVVQSRGGNILQVNVAPDPQSGEDENSGSLALLPTKFRKLIWVKRGDFVIVSGTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWPVVFSE 130
MSGAGRKS YRK VT++VL+ PEP AGE + +V RGGN+ +V + +GE SLA+LPTK+RKLIWV+RGDF+IVSG D +KG V+F VEHILYK+Q+K+LK + +WP VF E
Sbjct: 1 MSGAGRKSGYRKGVTQDVLYGEPEPE--AGEVIVQVKSLRGGNLFEV----ETPTGEV----SLAMLPTKYRKLIWVRRGDFLIVSGADDD------KKGAVQFSVEHILYKDQIKNLKSKNLWPEVFVE 114
BLAST of EWM22121.1 vs. NCBI_GenBank
Match: gi|301117640|ref|XP_002906548.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262107897|gb|EEY65949.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 129.798 bits (325), Expect = 7.555e-34 Identity = 72/139 (51.80%), Postives = 90/139 (64.75%), Query Frame = 0
Query: 1 MSGAGRKSAYRKSVTEEVLHSFPEPNVAAGERVARVVQSRGGNILQVNVAPDPQSGEDENSG-SLALLPTKFRKLIWVKRGDFVIVS-GTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWPVVFSEPAEQGPA 137
MSG+GRKSAYRK VT+ VL+ PEP E + RV RG N+ +V ED N S+ +LPTKFRKLIWVKRGDF+IV G + TA G+KG V +VEHILYKEQ+K+LK + +WP F + + GPA
Sbjct: 1 MSGSGRKSAYRKGVTKRVLYGDPEPK--ENELIVRVTALRGSNLFEV---------EDANGAKSVTMLPTKFRKLIWVKRGDFLIVGEGDGGETTTATGKKGAVTSIVEHILYKEQIKNLKRKELWPATFDD-SPTGPA 127
BLAST of EWM22121.1 vs. NCBI_GenBank
Match: gi|298710392|emb|CBJ25456.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 129.413 bits (324), Expect = 5.194e-33 Identity = 65/125 (52.00%), Postives = 89/125 (71.20%), Query Frame = 0
Query: 1 MSGAGRKSAYRKSVTEEVLHSFPEPNVAAGERVARVVQSRGGNILQVNVAPDPQSGEDENSGSLALLPTKFRKLIWVKRGDFVIVSGTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWP 125
M+G GR++ YRKSVT++ L+S PEP E + RG NI+++ +A +GE SLALLPT+FRKLIWVKRGD++I S ++ DF+T+AGE GKV+ VEHIL K+Q+KHLK + +WP
Sbjct: 1 MAGVGRRTLYRKSVTDDYLNSTPEP--GENEEIVLAQAPRGSNIIEIMLA----NGEP----SLALLPTRFRKLIWVKRGDYLITSTSAGDFETSAGETGKVRHRVEHILNKDQIKHLKKRELWP 115
BLAST of EWM22121.1 vs. NCBI_GenBank
Match: gi|669156184|ref|XP_008613654.1| (hypothetical protein SDRG_09494 [Saprolegnia diclina VS20] >gi|669156186|ref|XP_008613655.1| hypothetical protein, variant [Saprolegnia diclina VS20] >gi|530734726|gb|EQC32968.1| hypothetical protein SDRG_09494 [Saprolegnia diclina VS20] >gi|530734727|gb|EQC32969.1| hypothetical protein, variant [Saprolegnia diclina VS20]) HSP 1 Score: 127.102 bits (318), Expect = 8.497e-33 Identity = 68/130 (52.31%), Postives = 86/130 (66.15%), Query Frame = 0
Query: 1 MSGAGRKSAYRKSVTEEVLHSFPEPNVAAGERVARVVQSRGGNILQVNVAPDPQSGEDENSGSLALLPTKFRKLIWVKRGDFVIVSGTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWPVVFSE 130
MSGAGRKS YRK VT++VL+ PEP AGE + +V RGGN+ +V P G LA+LPTK+RKLIW++RGDF+IVSG +KG V F VEHILYK+Q+K+LK + +WP VF E
Sbjct: 1 MSGAGRKSGYRKGVTQDVLYGEPEP--VAGELIVQVKSLRGGNLFEVE-TPTGDKG-------LAMLPTKYRKLIWIRRGDFLIVSGADD------AKKGAVNFSVEHILYKDQIKNLKAKDLWPDVFVE 114
BLAST of EWM22121.1 vs. NCBI_GenBank
Match: gi|566017755|gb|ETI40666.1| (hypothetical protein F443_14028 [Phytophthora parasitica P1569] >gi|567955132|gb|ETK80765.1| hypothetical protein L915_13672 [Phytophthora parasitica] >gi|567983795|gb|ETL34180.1| hypothetical protein L916_13571 [Phytophthora parasitica] >gi|568013289|gb|ETL87466.1| hypothetical protein L917_13378 [Phytophthora parasitica] >gi|568043370|gb|ETM40661.1| hypothetical protein L914_13466 [Phytophthora parasitica] >gi|570945166|gb|ETP10423.1| hypothetical protein F441_13956 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 125.946 bits (315), Expect = 2.067e-32 Identity = 70/138 (50.72%), Postives = 89/138 (64.49%), Query Frame = 0
Query: 1 MSGAGRKSAYRKSVTEEVLHSFPEPNVAAGERVARVVQSRGGNILQVNVAPDPQSGEDENSGSLALLPTKFRKLIWVKRGDFVIVS-GTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWPVVFSEPAEQGPA 137
MSG+GRKSAYRK VT+ VL+ PEP E + RV RG N+ +V A +S + +LPTKFRKLIWVKRGDF+IV G + TA G+KG V +VEHILYKEQ+K+LK + +WP F + + GPA
Sbjct: 1 MSGSGRKSAYRKGVTKRVLYGDPEPK--ENELIVRVTALRGSNLFEVVDANGVKS--------VTMLPTKFRKLIWVKRGDFLIVGEGDGGEATTATGKKGAVTSIVEHILYKEQIKNLKRKELWPAAFDD-SPTGPA 127
BLAST of EWM22121.1 vs. NCBI_GenBank
Match: gi|570321405|gb|ETO69353.1| (hypothetical protein F444_14060 [Phytophthora parasitica P1976]) HSP 1 Score: 125.946 bits (315), Expect = 2.377e-32 Identity = 70/138 (50.72%), Postives = 89/138 (64.49%), Query Frame = 0
Query: 1 MSGAGRKSAYRKSVTEEVLHSFPEPNVAAGERVARVVQSRGGNILQVNVAPDPQSGEDENSGSLALLPTKFRKLIWVKRGDFVIVS-GTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWPVVFSEPAEQGPA 137
MSG+GRKSAYRK VT+ VL+ PEP E + RV RG N+ +V A +S + +LPTKFRKLIWVKRGDF+IV G + TA G+KG V +VEHILYKEQ+K+LK + +WP F + + GPA
Sbjct: 1 MSGSGRKSAYRKGVTKRVLYGDPEPK--ENELIVRVTALRGSNLFEVVDANGVKS--------VTMLPTKFRKLIWVKRGDFLIVGEGDGGEATTATGKKGAVTSIVEHILYKEQIKNLKRKELWPAAFDD-SPTGPA 127
BLAST of EWM22121.1 vs. NCBI_GenBank
Match: gi|695375644|ref|XP_009515592.1| (hypothetical protein PHYSODRAFT_474031 [Phytophthora sojae] >gi|348688503|gb|EGZ28317.1| hypothetical protein PHYSODRAFT_474031 [Phytophthora sojae]) HSP 1 Score: 125.946 bits (315), Expect = 2.475e-32 Identity = 69/141 (48.94%), Postives = 88/141 (62.41%), Query Frame = 0
Query: 1 MSGAGRKSAYRKSVTEEVLHSFPEPNVAAGERVARVVQSRGGNILQVNVAPDPQSGEDENSGSLALLPTKFRKLIWVKRGDFVIVS-GTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWPVVFSEPAEQGPAHKG 140
MSGAGRKSAYRK VT VL+ PEP E + RV RG N+ +V A E + S+ +LPTKFRKLIWVKRGDF+IV G + TA G+KG V +VEHILYK+Q+K+LK + +WP F + + +G
Sbjct: 1 MSGAGRKSAYRKGVTSRVLYGDPEPK--ENELIVRVTALRGSNLFEVVDA--------EGAKSVTMLPTKFRKLIWVKRGDFLIVGEGDGGEATTAKGKKGAVTSIVEHILYKDQIKNLKRKDLWPAAFDDSSASTAWTQG 131 The following BLAST results are available for this feature:
BLAST of EWM22121.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|