EWM22148.1, cds8516 (CDS) Nannochloropsis gaditana

Overview
NameEWM22148.1
Unique Namecds8516
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:218540..218905 +
Alignment locationKK037249.1:219026..221767 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22148.1
Productrwp-rk domain-containing protein
Orig transcript idgnl|cribi|Naga_100064g25.4105.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:218540..218905 +
KK037249.1supercontigKK037249.1:219026..221767 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR003035RWP-RK_dom
Homology
BLAST of EWM22148.1 vs. NCBI_GenBank
Match: gi|585102569|gb|EWM22148.1| (rwp-rk domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 2071.97 bits (5367), Expect = 0.000e+0
Identity = 1035/1035 (100.00%), Postives = 1035/1035 (100.00%), Query Frame = 0
Query:    1 MYTGQVLPAAPRQSLSCASDSTISITPDANTYSNPNIDASDCKTHSPPAAAAATACGKTTVSSMGCDTGGVKAAASSPAGAVTGTNTTSVDMLASEWLLSLAAGPVHQHPPQKSPRTSTLGSPSGVRAAASSAIGSTSDKVSSGAPGPVSSPTAQTKCSRFPLSPSGVHGPLSSASPSTVPSLCSTSPISSSPSLPQASTTMDVGVENEPLKSLRASGAANTASQPSSDGQTTRVRRTRKSRTSPDRIALPSPGTLPASPRSHTGPGLPLARPSLPSDPIDQTNAYGATTTRKEATGRVAPAVERSHGGFSPVPVQEKELQLLQSLQGRRPGCGGGEGGRVTPLQSVGLVRPIQPLKSQPSPTSPPDAKSPRPSTSTLASGGSSRSLKSVSLVELRRYFDRPIEDAARALGICSTLLKKICRRYHIKRWPYRQVKSLDRTLECLKVAMTTARASAGQPGHDPKEEARLCQQIRVLEARKVELIESSTTLGSVPVAMEGEDSTEGKGRRTEGGAEDGRSFQLPSPAFLAWSEGPSPPHAPLSAPSPIAPWTPVGATTTGGHKRKCSDGVGDGEGSRHRDATPDESTDDTNDVNNKSSGDFGHGLARAPSTTSMLHLMSINSPTFEKPASPALSVPSSVPPSFPSSVPPSFPSSFTTGPPGGYTGASGAISAPLQDSLPPSMPFHVFLPQATAAQQVSTHLHQGDAAAAAPAPPAAAVASLGAAAGTTTCGIGTSFAPPSFPPSFPPSFPPSFNPSCFYSIPNLYGGFNEGFPASAAVTQAGIQGGDKAGLSMDTLRAAYIQHMALARAQMRNMYPSPLPYVPSSQATSSGTAGGLGGQAPFLHEQQTFQLQQQQQLYQQQYYMLWLQQKRQLPMPMPAFAFPQTLTTDLTRPKTDTAAIAKEEPGSTGAQCETAVKTERGKEGFEEKAKAATDPVPARQARAPPPTIAAAGKGLGSPCTPQGEGGSNLGRSTTVHTSPQPEDDKEREQEEGERLVSKAKLDACPCPTDLGWKETGSAGKGVGEGVTDSAALPSQRQ 1035
            MYTGQVLPAAPRQSLSCASDSTISITPDANTYSNPNIDASDCKTHSPPAAAAATACGKTTVSSMGCDTGGVKAAASSPAGAVTGTNTTSVDMLASEWLLSLAAGPVHQHPPQKSPRTSTLGSPSGVRAAASSAIGSTSDKVSSGAPGPVSSPTAQTKCSRFPLSPSGVHGPLSSASPSTVPSLCSTSPISSSPSLPQASTTMDVGVENEPLKSLRASGAANTASQPSSDGQTTRVRRTRKSRTSPDRIALPSPGTLPASPRSHTGPGLPLARPSLPSDPIDQTNAYGATTTRKEATGRVAPAVERSHGGFSPVPVQEKELQLLQSLQGRRPGCGGGEGGRVTPLQSVGLVRPIQPLKSQPSPTSPPDAKSPRPSTSTLASGGSSRSLKSVSLVELRRYFDRPIEDAARALGICSTLLKKICRRYHIKRWPYRQVKSLDRTLECLKVAMTTARASAGQPGHDPKEEARLCQQIRVLEARKVELIESSTTLGSVPVAMEGEDSTEGKGRRTEGGAEDGRSFQLPSPAFLAWSEGPSPPHAPLSAPSPIAPWTPVGATTTGGHKRKCSDGVGDGEGSRHRDATPDESTDDTNDVNNKSSGDFGHGLARAPSTTSMLHLMSINSPTFEKPASPALSVPSSVPPSFPSSVPPSFPSSFTTGPPGGYTGASGAISAPLQDSLPPSMPFHVFLPQATAAQQVSTHLHQGDAAAAAPAPPAAAVASLGAAAGTTTCGIGTSFAPPSFPPSFPPSFPPSFNPSCFYSIPNLYGGFNEGFPASAAVTQAGIQGGDKAGLSMDTLRAAYIQHMALARAQMRNMYPSPLPYVPSSQATSSGTAGGLGGQAPFLHEQQTFQLQQQQQLYQQQYYMLWLQQKRQLPMPMPAFAFPQTLTTDLTRPKTDTAAIAKEEPGSTGAQCETAVKTERGKEGFEEKAKAATDPVPARQARAPPPTIAAAGKGLGSPCTPQGEGGSNLGRSTTVHTSPQPEDDKEREQEEGERLVSKAKLDACPCPTDLGWKETGSAGKGVGEGVTDSAALPSQRQ
Sbjct:    1 MYTGQVLPAAPRQSLSCASDSTISITPDANTYSNPNIDASDCKTHSPPAAAAATACGKTTVSSMGCDTGGVKAAASSPAGAVTGTNTTSVDMLASEWLLSLAAGPVHQHPPQKSPRTSTLGSPSGVRAAASSAIGSTSDKVSSGAPGPVSSPTAQTKCSRFPLSPSGVHGPLSSASPSTVPSLCSTSPISSSPSLPQASTTMDVGVENEPLKSLRASGAANTASQPSSDGQTTRVRRTRKSRTSPDRIALPSPGTLPASPRSHTGPGLPLARPSLPSDPIDQTNAYGATTTRKEATGRVAPAVERSHGGFSPVPVQEKELQLLQSLQGRRPGCGGGEGGRVTPLQSVGLVRPIQPLKSQPSPTSPPDAKSPRPSTSTLASGGSSRSLKSVSLVELRRYFDRPIEDAARALGICSTLLKKICRRYHIKRWPYRQVKSLDRTLECLKVAMTTARASAGQPGHDPKEEARLCQQIRVLEARKVELIESSTTLGSVPVAMEGEDSTEGKGRRTEGGAEDGRSFQLPSPAFLAWSEGPSPPHAPLSAPSPIAPWTPVGATTTGGHKRKCSDGVGDGEGSRHRDATPDESTDDTNDVNNKSSGDFGHGLARAPSTTSMLHLMSINSPTFEKPASPALSVPSSVPPSFPSSVPPSFPSSFTTGPPGGYTGASGAISAPLQDSLPPSMPFHVFLPQATAAQQVSTHLHQGDAAAAAPAPPAAAVASLGAAAGTTTCGIGTSFAPPSFPPSFPPSFPPSFNPSCFYSIPNLYGGFNEGFPASAAVTQAGIQGGDKAGLSMDTLRAAYIQHMALARAQMRNMYPSPLPYVPSSQATSSGTAGGLGGQAPFLHEQQTFQLQQQQQLYQQQYYMLWLQQKRQLPMPMPAFAFPQTLTTDLTRPKTDTAAIAKEEPGSTGAQCETAVKTERGKEGFEEKAKAATDPVPARQARAPPPTIAAAGKGLGSPCTPQGEGGSNLGRSTTVHTSPQPEDDKEREQEEGERLVSKAKLDACPCPTDLGWKETGSAGKGVGEGVTDSAALPSQRQ 1035          
BLAST of EWM22148.1 vs. NCBI_GenBank
Match: gi|553186882|ref|XP_005854508.1| (rwp-rk domain-containing protein [Nannochloropsis gaditana CCMP526] >gi|422294552|gb|EKU21852.1| rwp-rk domain-containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1224.54 bits (3167), Expect = 0.000e+0
Identity = 621/635 (97.80%), Postives = 624/635 (98.27%), Query Frame = 0
Query:   64 MGCDTGGVKAAASSPAGAVTGTNTTSVDMLASEWLLSLAAGPVHQHPPQKSPRTSTLGSPSGVRAAASSAIGSTSDKVSSGAPGPVSSPTAQTKCSRFPLSPSGVHGPLSSASPSTVPSLCSTSPISSSPSLPQASTTMDVGVENEPLKSLRASGAANTASQPSSDGQTTRVRRTRKSRTSPDRIALPSPGTLPASPRSHTGPGLPLARPSLPSDPIDQTNAYGATTTRKEATGRVAPAVERSHGGFSPVPVQEKELQLLQSLQGRRPGCGGGEGGRVTPLQSVGLVRPIQPLKSQPSPTSPPDAKSPRPSTSTLASGGSSRSLKSVSLVELRRYFDRPIEDAARALGICSTLLKKICRRYHIKRWPYRQVKSLDRTLECLKVAMTTARASAGQPGHDPKEEARLCQQIRVLEARKVELIESSTTLGSVPVAMEGEDSTEGKGRRTEGGAEDGRSFQLPSPAFLAWSEGPSPPHAPLSAPSPIAPWTPVGATTTGGHKRKCSDGVGDGEGSRHRDATPDESTDDTNDVNNKSSGDFGHGLARAPSTTSMLHLMSINSPTFEKPASPALSVPSSVPPSFPSSVPPSFPSSFTTGPPGGYTGASGAISAPLQDSLPPSMPFHVFLPQATAAQQVSTH 698
            MGCDTGGVKAAASSPAGAVTGTNTTSVDMLASEWLLSLAAGPVHQHPPQKSPRTSTLGSPSGVRAAASSAIGS SDK SSGAPGPVSSPTAQTKCSRFPLSPSGVHGPLSSASPSTVPSLCSTSPISSSPS PQASTTMDVGVENEPLKSLRASGAANTASQPSSDGQTTRVRRTRKSRTSPDRIALPSPGTLPASPRSH GPGLPLARPSLPSDPIDQT+AYGATTTRKEATGRVAPAVERSHGGFSPVPVQEKELQLLQSLQGRRPGCGGGEGGRVTPLQSVGLVRPIQPLKSQP PTSPP  KSPRPS STLASGGSSRSLKSVSLVELRRYFDRPIEDAARALGICSTLLKKICRRYHIKRWPYRQVKSLDRTLECLKVAMTTARASAGQPGHDPKEEARLCQQIRVLEARKVELIESSTTLGSVP+A+EGEDSTEGKGRRTEGGAEDGRSFQLPSPAFLAWSEGPSPPHAPLSAPSPIAPWTPVGATTTGGHKRKCSDGVGDGEGSRHRDATPDESTDDTNDVNNKSSGDFGHGLARAPSTTSMLHLMSINSPTFEKPASPALSVPSSVPPSFPSSVPPSFPSSFTTGPPGGYTGASGAISAPLQDSLPPSMPFHVFLPQATAAQQ   H
Sbjct:    1 MGCDTGGVKAAASSPAGAVTGTNTTSVDMLASEWLLSLAAGPVHQHPPQKSPRTSTLGSPSGVRAAASSAIGSMSDKASSGAPGPVSSPTAQTKCSRFPLSPSGVHGPLSSASPSTVPSLCSTSPISSSPSFPQASTTMDVGVENEPLKSLRASGAANTASQPSSDGQTTRVRRTRKSRTSPDRIALPSPGTLPASPRSHPGPGLPLARPSLPSDPIDQTDAYGATTTRKEATGRVAPAVERSHGGFSPVPVQEKELQLLQSLQGRRPGCGGGEGGRVTPLQSVGLVRPIQPLKSQPFPTSPPGTKSPRPSASTLASGGSSRSLKSVSLVELRRYFDRPIEDAARALGICSTLLKKICRRYHIKRWPYRQVKSLDRTLECLKVAMTTARASAGQPGHDPKEEARLCQQIRVLEARKVELIESSTTLGSVPLAVEGEDSTEGKGRRTEGGAEDGRSFQLPSPAFLAWSEGPSPPHAPLSAPSPIAPWTPVGATTTGGHKRKCSDGVGDGEGSRHRDATPDESTDDTNDVNNKSSGDFGHGLARAPSTTSMLHLMSINSPTFEKPASPALSVPSSVPPSFPSSVPPSFPSSFTTGPPGGYTGASGAISAPLQDSLPPSMPFHVFLPQATAAQQGFPH 635          
BLAST of EWM22148.1 vs. NCBI_GenBank
Match: gi|635361259|emb|CCI10645.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 92.8189 bits (229), Expect = 6.027e-16
Identity = 55/147 (37.41%), Postives = 83/147 (56.46%), Query Frame = 0
Query:  367 DAKSPRPSTSTLASGGSSRSL-KSVSLVELRRYFDRPIEDAARALGICSTLLKKICRRYHIKRWPYRQVKSLDRTLECLKVAMTTARASAGQPGHDPKEEARLCQQIRVLEARKVELIES------STTLGSVPVAMEG-EDSTEGK 505
            D +  + ++    SG S  SL K +SL ELR +FDRPI + A+  GIC TL+KKICRR  IKRWP+RQ++SL +++  L+ AM +A         +  E+ R   QI  L  R+  +I +      + TLG    A++  ED++  +
Sbjct:   85 DIRGEQDTSVCTESGRSKNSLTKQISLDELRAHFDRPIIEVAKKFGICITLMKKICRRNGIKRWPHRQIRSLTKSIAALEAAMLSA---------NETEQERYQDQIMNLRRRRESVIANPNKFSMAQTLGDQQYAVQNKEDASRSR 222          
BLAST of EWM22148.1 vs. NCBI_GenBank
Match: gi|669166402|ref|XP_008618763.1| (hypothetical protein SDRG_14417 [Saprolegnia diclina VS20] >gi|530729591|gb|EQC27833.1| hypothetical protein SDRG_14417 [Saprolegnia diclina VS20])

HSP 1 Score: 91.2781 bits (225), Expect = 1.691e-15
Identity = 49/124 (39.52%), Postives = 72/124 (58.06%), Query Frame = 0
Query:  388 KSVSLVELRRYFDRPIEDAARALGICSTLLKKICRRYHIKRWPYRQVKSLDRTLECLKVAMTTARASAGQPGHDPKEEARLCQQIRVLEARKVELIESSTTLGSVPVAMEGEDSTEGKGRRTEG 511
            K +S+ ELR +FD+PI + AR  GIC TL+KK+CRR  IKRWP+RQ++SL +++  ++ AM TA  S         E  +  +QIR L  ++  +I       SV VA +     E +  RT+G
Sbjct:   96 KLISIDELRDHFDQPIVEVARHFGICITLMKKVCRRNGIKRWPHRQIRSLTKSISSMEAAMMTANVS---------EREKYEEQIRSLVLKRDAVIADPNKEVSVSVA-KASAKDEKRSPRTDG 209          
BLAST of EWM22148.1 vs. NCBI_GenBank
Match: gi|570938217|gb|ETP03474.1| (hypothetical protein F441_19545 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 91.6633 bits (226), Expect = 1.780e-15
Identity = 41/96 (42.71%), Postives = 60/96 (62.50%), Query Frame = 0
Query:  388 KSVSLVELRRYFDRPIEDAARALGICSTLLKKICRRYHIKRWPYRQVKSLDRTLECLKVAMTTARASAGQPGHDPKEEARLCQQIRVLEARKVELI 483
            K +S+ ELR +FDRPI D A+  GIC TL+KKICRR  IKRWP+RQ++SL +++  ++ AM +A  S         E  +   QI  L+ ++  +I
Sbjct:  137 KHISIEELRAHFDRPIIDVAKDFGICITLMKKICRRNGIKRWPHRQIRSLSKSIASMEAAMLSAHGS---------EREKYRDQIVNLKMKRESVI 223          
BLAST of EWM22148.1 vs. NCBI_GenBank
Match: gi|675209641|ref|XP_008913705.1| (hypothetical protein PPTG_17267 [Phytophthora parasitica INRA-310] >gi|568006410|gb|ETL80669.1| hypothetical protein L917_18855 [Phytophthora parasitica] >gi|568086043|gb|ETN00939.1| hypothetical protein PPTG_17267 [Phytophthora parasitica INRA-310] >gi|970646219|gb|KUF86460.1| NLP2 protein [Phytophthora nicotianae] >gi|970649356|gb|KUF88653.1| NLP2 protein [Phytophthora nicotianae])

HSP 1 Score: 91.6633 bits (226), Expect = 1.828e-15
Identity = 41/96 (42.71%), Postives = 60/96 (62.50%), Query Frame = 0
Query:  388 KSVSLVELRRYFDRPIEDAARALGICSTLLKKICRRYHIKRWPYRQVKSLDRTLECLKVAMTTARASAGQPGHDPKEEARLCQQIRVLEARKVELI 483
            K +S+ ELR +FDRPI D A+  GIC TL+KKICRR  IKRWP+RQ++SL +++  ++ AM +A  S         E  +   QI  L+ ++  +I
Sbjct:  137 KHISIEELRAHFDRPIIDVAKDFGICITLMKKICRRNGIKRWPHRQIRSLSKSIASMEAAMLSAHGS---------EREKYRDQIVNLKMKRESVI 223          
BLAST of EWM22148.1 vs. NCBI_GenBank
Match: gi|570314465|gb|ETO62413.1| (hypothetical protein F444_19674 [Phytophthora parasitica P1976])

HSP 1 Score: 91.6633 bits (226), Expect = 1.844e-15
Identity = 41/96 (42.71%), Postives = 60/96 (62.50%), Query Frame = 0
Query:  388 KSVSLVELRRYFDRPIEDAARALGICSTLLKKICRRYHIKRWPYRQVKSLDRTLECLKVAMTTARASAGQPGHDPKEEARLCQQIRVLEARKVELI 483
            K +S+ ELR +FDRPI D A+  GIC TL+KKICRR  IKRWP+RQ++SL +++  ++ AM +A  S         E  +   QI  L+ ++  +I
Sbjct:  137 KHISIEELRAHFDRPIIDVAKDFGICITLMKKICRRNGIKRWPHRQIRSLSKSIASMEAAMLSAHGS---------EREKYRDQIVNLKMKRESVI 223          
BLAST of EWM22148.1 vs. NCBI_GenBank
Match: gi|567976898|gb|ETL27412.1| (hypothetical protein L916_19037 [Phytophthora parasitica])

HSP 1 Score: 91.6633 bits (226), Expect = 1.844e-15
Identity = 41/96 (42.71%), Postives = 60/96 (62.50%), Query Frame = 0
Query:  388 KSVSLVELRRYFDRPIEDAARALGICSTLLKKICRRYHIKRWPYRQVKSLDRTLECLKVAMTTARASAGQPGHDPKEEARLCQQIRVLEARKVELI 483
            K +S+ ELR +FDRPI D A+  GIC TL+KKICRR  IKRWP+RQ++SL +++  ++ AM +A  S         E  +   QI  L+ ++  +I
Sbjct:  137 KHISIEELRAHFDRPIIDVAKDFGICITLMKKICRRNGIKRWPHRQIRSLSKSIASMEAAMLSAHGS---------EREKYRDQIVNLKMKRESVI 223          
BLAST of EWM22148.1 vs. NCBI_GenBank
Match: gi|567948226|gb|ETK73979.1| (hypothetical protein L915_19144 [Phytophthora parasitica])

HSP 1 Score: 91.6633 bits (226), Expect = 1.844e-15
Identity = 41/96 (42.71%), Postives = 60/96 (62.50%), Query Frame = 0
Query:  388 KSVSLVELRRYFDRPIEDAARALGICSTLLKKICRRYHIKRWPYRQVKSLDRTLECLKVAMTTARASAGQPGHDPKEEARLCQQIRVLEARKVELI 483
            K +S+ ELR +FDRPI D A+  GIC TL+KKICRR  IKRWP+RQ++SL +++  ++ AM +A  S         E  +   QI  L+ ++  +I
Sbjct:  137 KHISIEELRAHFDRPIIDVAKDFGICITLMKKICRRNGIKRWPHRQIRSLSKSIASMEAAMLSAHGS---------EREKYRDQIVNLKMKRESVI 223          
BLAST of EWM22148.1 vs. NCBI_GenBank
Match: gi|566007177|gb|ETI30088.1| (hypothetical protein F443_22790 [Phytophthora parasitica P1569] >gi|566010721|gb|ETI33632.1| hypothetical protein F443_19709 [Phytophthora parasitica P1569])

HSP 1 Score: 91.6633 bits (226), Expect = 1.894e-15
Identity = 41/96 (42.71%), Postives = 60/96 (62.50%), Query Frame = 0
Query:  388 KSVSLVELRRYFDRPIEDAARALGICSTLLKKICRRYHIKRWPYRQVKSLDRTLECLKVAMTTARASAGQPGHDPKEEARLCQQIRVLEARKVELI 483
            K +S+ ELR +FDRPI D A+  GIC TL+KKICRR  IKRWP+RQ++SL +++  ++ AM +A  S         E  +   QI  L+ ++  +I
Sbjct:  137 KHISIEELRAHFDRPIIDVAKDFGICITLMKKICRRNGIKRWPHRQIRSLSKSIASMEAAMLSAHGS---------EREKYRDQIVNLKMKRESVI 223          
The following BLAST results are available for this feature:
BLAST of EWM22148.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102569|gb|EWM22148.1|0.000e+0100.00rwp-rk domain-containing protein [Nannochloropsis ... [more]
gi|553186882|ref|XP_005854508.1|0.000e+097.80rwp-rk domain-containing protein [Nannochloropsis ... [more]
gi|635361259|emb|CCI10645.1|6.027e-1637.41unnamed protein product [Albugo candida][more]
gi|669166402|ref|XP_008618763.1|1.691e-1539.52hypothetical protein SDRG_14417 [Saprolegnia dicli... [more]
gi|570938217|gb|ETP03474.1|1.780e-1542.71hypothetical protein F441_19545 [Phytophthora para... [more]
gi|675209641|ref|XP_008913705.1|1.828e-1542.71hypothetical protein PPTG_17267 [Phytophthora para... [more]
gi|570314465|gb|ETO62413.1|1.844e-1542.71hypothetical protein F444_19674 [Phytophthora para... [more]
gi|567976898|gb|ETL27412.1|1.844e-1542.71hypothetical protein L916_19037 [Phytophthora para... [more]
gi|567948226|gb|ETK73979.1|1.844e-1542.71hypothetical protein L915_19144 [Phytophthora para... [more]
gi|566007177|gb|ETI30088.1|1.894e-1542.71hypothetical protein F443_22790 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8543rna8543Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications