EWM22180.1, cds8500 (CDS) Nannochloropsis gaditana

Overview
NameEWM22180.1
Unique Namecds8500
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:171660..171761 +
Alignment locationKK037249.1:171863..171942 +
Alignment locationKK037249.1:172086..172234 +
Alignment locationKK037249.1:172326..172468 +
Alignment locationKK037249.1:172572..172745 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22180.1
Productprefoldin subunit 3
Orig transcript idgnl|cribi|Naga_100153g10.4154.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:171660..171761 +
KK037249.1supercontigKK037249.1:171863..171942 +
KK037249.1supercontigKK037249.1:172086..172234 +
KK037249.1supercontigKK037249.1:172326..172468 +
KK037249.1supercontigKK037249.1:172572..172745 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006457protein folding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016272prefoldin complex
Vocabulary: INTERPRO
TermDefinition
IPR009053Prefoldin
IPR004127Prefoldin_subunit_alpha
IPR016655PFD3
Homology
BLAST of EWM22180.1 vs. NCBI_GenBank
Match: gi|585102607|gb|EWM22180.1| (prefoldin subunit 3 [Nannochloropsis gaditana])

HSP 1 Score: 440.654 bits (1132), Expect = 1.561e-156
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0
Query:    1 MAARDTGTMEQNVDIQKHLSVGKNPRGIPTATFIEDVGAFLQTLGGVPVETAIGAFNELYGKCKTLENSLGRVKLSMKAKIPEIEKTLELVHVLEGKQAEGEALTTHYNLADTIYAKAEVACHGRVCLWLGANVMLEYSYEEAKGVLETSLRNAKEKLKTTNEDLEHLKNQTTTIEVNMARLFNYDVKRRKALRQEEGAADKTGGGKGRGNGNPK 215
            MAARDTGTMEQNVDIQKHLSVGKNPRGIPTATFIEDVGAFLQTLGGVPVETAIGAFNELYGKCKTLENSLGRVKLSMKAKIPEIEKTLELVHVLEGKQAEGEALTTHYNLADTIYAKAEVACHGRVCLWLGANVMLEYSYEEAKGVLETSLRNAKEKLKTTNEDLEHLKNQTTTIEVNMARLFNYDVKRRKALRQEEGAADKTGGGKGRGNGNPK
Sbjct:    1 MAARDTGTMEQNVDIQKHLSVGKNPRGIPTATFIEDVGAFLQTLGGVPVETAIGAFNELYGKCKTLENSLGRVKLSMKAKIPEIEKTLELVHVLEGKQAEGEALTTHYNLADTIYAKAEVACHGRVCLWLGANVMLEYSYEEAKGVLETSLRNAKEKLKTTNEDLEHLKNQTTTIEVNMARLFNYDVKRRKALRQEEGAADKTGGGKGRGNGNPK 215          
BLAST of EWM22180.1 vs. NCBI_GenBank
Match: gi|553189609|ref|XP_005855038.1| (prefoldin subunit 3 [Nannochloropsis gaditana CCMP526] >gi|422294023|gb|EKU21323.1| prefoldin subunit 3 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 315.079 bits (806), Expect = 5.195e-107
Identity = 158/174 (90.80%), Postives = 158/174 (90.80%), Query Frame = 0
Query:    1 MAARDTGTMEQNVDIQKHLSVGKNPRGIPTATFI----------------EDVGAFLQTLGGVPVETAIGAFNELYGKCKTLENSLGRVKLSMKAKIPEIEKTLELVHVLEGKQAEGEALTTHYNLADTIYAKAEVACHGRVCLWLGANVMLEYSYEEAKGVLETSLRNAKEKL 158
            MAARDTGTMEQNVDIQKHLSVGKNPRGIPTATFI                EDVGAFLQTLGGVPVETAIGAFNELYGKCKTLENSLGRVKLSMKAKIPEIEKTLELVHVLEGKQAEGEALTTHYNLADTIYAKAEVACHGRVCLWLGANVMLEYSYEEAKGVLETSLRNAKEKL
Sbjct:    1 MAARDTGTMEQNVDIQKHLSVGKNPRGIPTATFIPPQPLSTTRFLTCAQKEDVGAFLQTLGGVPVETAIGAFNELYGKCKTLENSLGRVKLSMKAKIPEIEKTLELVHVLEGKQAEGEALTTHYNLADTIYAKAEVACHGRVCLWLGANVMLEYSYEEAKGVLETSLRNAKEKL 174          
BLAST of EWM22180.1 vs. NCBI_GenBank
Match: gi|298714035|emb|CBJ27267.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 215.698 bits (548), Expect = 1.181e-67
Identity = 102/173 (58.96%), Postives = 132/173 (76.30%), Query Frame = 0
Query:   19 LSVGKNPRGIPTATFIEDVGAFLQTLGGVPVETAIGAFNELYGKCKTLENSLGRVKLSMKAKIPEIEKTLELVHVLEGKQAEGEALTTHYNLADTIYAKAEVACHGRVCLWLGANVMLEYSYEEAKGVLETSLRNAKEKLKTTNEDLEHLKNQTTTIEVNMARLFNYDVKRRK 191
            L   KNPRGIP   FI+DV  FL  LG   VET IGAFNELY K K +E+++ + K SMK K+PEIE++LELV  L+ +Q + E + T+Y+LADT++AKAE+ C GRVC+WLGA+VM+EY+Y+EA  +LE +L  A EK KTT EDLE L+NQ+ T+EVNMARL+NYDV RR+
Sbjct:   20 LVTRKNPRGIPEVVFIDDVVQFLARLGVEEVETPIGAFNELYSKYKLMESNMDKAKQSMKDKVPEIERSLELVRHLQERQDKEETVKTNYSLADTVFAKAELKCDGRVCIWLGASVMVEYTYKEALELLERNLATALEKKKTTQEDLEFLRNQSITVEVNMARLYNYDVLRRR 192          
BLAST of EWM22180.1 vs. NCBI_GenBank
Match: gi|676386961|ref|XP_009036759.1| (hypothetical protein AURANDRAFT_26059 [Aureococcus anophagefferens] >gi|323452902|gb|EGB08775.1| hypothetical protein AURANDRAFT_26059 [Aureococcus anophagefferens])

HSP 1 Score: 186.422 bits (472), Expect = 2.061e-56
Identity = 94/182 (51.65%), Postives = 120/182 (65.93%), Query Frame = 0
Query:   19 LSVGKNPRGIPTATFIEDVGAFLQTLGGVPVETAIGAFNELYGKCKTLENSLGRVKLSMKAKIPEIEKTLELVHVLEGKQAEGEALTTHYNLADTIYAKAEVACHGRVCLWLGANVMLEYSYEEAKGVLETSLRNAKEKLKTTNEDLEHLKNQTTTIEVNMARLFNYDVKRRKALRQEEGAA 200
            LS   NPRGIP   FI+ V + L       VET IGAFNEL+ K K LE    R K+SMK KIPEI KTL+LV  L+ K    E   +HY+L++ IY +A +   G VCLWLGANVM+EY Y+EA  +L  SL+NAK +    +EDL+ L++Q  T+EVNMAR+FNYDVKRR+  ++ E  A
Sbjct:    5 LSGNTNPRGIPHVAFIDSVESTLAATTDGTVETLIGAFNELHQKFKILEGHKARTKMSMKQKIPEITKTLQLVEHLKAKHEAEEDFMSHYSLSEMIYGRATITPTGNVCLWLGANVMVEYPYDEALDILTLSLKNAKLRKDICDEDLDMLRDQIITVEVNMARVFNYDVKRRRDEKKPEAGA 186          
BLAST of EWM22180.1 vs. NCBI_GenBank
Match: gi|695369473|ref|XP_009514063.1| (hypothetical protein PHYSODRAFT_320679 [Phytophthora sojae] >gi|348686974|gb|EGZ26788.1| hypothetical protein PHYSODRAFT_320679 [Phytophthora sojae])

HSP 1 Score: 177.948 bits (450), Expect = 7.005e-53
Identity = 82/170 (48.24%), Postives = 118/170 (69.41%), Query Frame = 0
Query:   23 KNPRGIPTATFIEDVGAFLQTLGGVPVETAIGAFNELYGKCKTLENSLGRVKLSMKAKIPEIEKTLELVHVLEGKQAEGEALTTHYNLADTIYAKAEVACH-GRVCLWLGANVMLEYSYEEAKGVLETSLRNAKEKLKTTNEDLEHLKNQTTTIEVNMARLFNYDVKRRK 191
            +NPRGIP+A F++ V AF+   G   +E  +GA  ++Y K K +E SL + + + K KIP+ +K L++V  L  K+ EGE L T +NLAD +YAKA V C  G+VC+WLGA VM+EY YE+A+ +LE ++ +A EKL    EDL  L++Q  T EVN+AR+FN+DV+RR+
Sbjct:   28 RNPRGIPSAVFVDSVEAFMDACGVKNIEPLVGALQQMYSKYKFMETSLQKNRETFKRKIPDTQKDLDMVRHLIAKRDEGETLQTQFNLADNVYAKAAVDCSVGKVCIWLGAQVMVEYPYEDAQDLLEKNVASATEKLGQIEEDLSFLRDQIITTEVNIARIFNHDVRRRR 197          
BLAST of EWM22180.1 vs. NCBI_GenBank
Match: gi|301123435|ref|XP_002909444.1| (prefoldin subunit 3, putative [Phytophthora infestans T30-4] >gi|262100206|gb|EEY58258.1| prefoldin subunit 3, putative [Phytophthora infestans T30-4])

HSP 1 Score: 176.022 bits (445), Expect = 4.401e-52
Identity = 80/170 (47.06%), Postives = 118/170 (69.41%), Query Frame = 0
Query:   23 KNPRGIPTATFIEDVGAFLQTLGGVPVETAIGAFNELYGKCKTLENSLGRVKLSMKAKIPEIEKTLELVHVLEGKQAEGEALTTHYNLADTIYAKAEVACH-GRVCLWLGANVMLEYSYEEAKGVLETSLRNAKEKLKTTNEDLEHLKNQTTTIEVNMARLFNYDVKRRK 191
            +NPRGIP+A F++ V  F+   G   +E  +GA  ++Y K K +E SL + + + K KIP+ +K L++V  L  K+ EGE L T +NL+D +YAKA V C+ G+VC+WLGA VM+EY YEEA+ +LE ++ +A E+L    EDL  L++Q  T EVN+AR+FN+DV+RR+
Sbjct:   28 RNPRGIPSAVFVDSVDTFMNACGVKNIEPLVGALQQMYSKYKFMETSLQKNRETFKRKIPDTQKDLDMVRHLIAKRDEGETLQTQFNLSDNVYAKASVDCNVGKVCIWLGAQVMVEYPYEEAQELLEKNVASATERLGQIEEDLSFLRDQIITTEVNIARIFNHDVRRRR 197          
BLAST of EWM22180.1 vs. NCBI_GenBank
Match: gi|1214703805|gb|OWZ15759.1| (Prefoldin subunit 3 [Phytophthora megakarya])

HSP 1 Score: 176.022 bits (445), Expect = 5.750e-52
Identity = 82/170 (48.24%), Postives = 115/170 (67.65%), Query Frame = 0
Query:   23 KNPRGIPTATFIEDVGAFLQTLGGVPVETAIGAFNELYGKCKTLENSLGRVKLSMKAKIPEIEKTLELVHVLEGKQAEGEALTTHYNLADTIYAKAEVACH-GRVCLWLGANVMLEYSYEEAKGVLETSLRNAKEKLKTTNEDLEHLKNQTTTIEVNMARLFNYDVKRRK 191
            +NPRGIP A F+E V AF+   G   +E  +GA  ++Y K K +E SL + + + K KIP+ +K L++V  L  K+  G+ L T +NLAD +YAKA V C  G+VC+WLGA VM+EY YEEA+ +LE ++  A EKL    EDL  L++Q  T EVN+AR+FN+DV+RR+
Sbjct:   30 RNPRGIPAAVFVEAVDAFMAACGVATIEPLVGALQQMYSKYKFMETSLQKNRETFKRKIPDTQKDLDMVRHLIVKRDAGDTLNTQFNLADNVYAKAAVDCSVGKVCIWLGAQVMVEYPYEEAQDLLEKNVATATEKLAQIEEDLSFLRDQIITTEVNIARIFNHDVRRRR 199          
BLAST of EWM22180.1 vs. NCBI_GenBank
Match: gi|953495843|emb|CEG42739.1| (prefoldin subunit 3 [Plasmopara halstedii])

HSP 1 Score: 174.866 bits (442), Expect = 1.143e-51
Identity = 80/170 (47.06%), Postives = 117/170 (68.82%), Query Frame = 0
Query:   23 KNPRGIPTATFIEDVGAFLQTLGGVPVETAIGAFNELYGKCKTLENSLGRVKLSMKAKIPEIEKTLELVHVLEGKQAEGEALTTHYNLADTIYAKAEVACH-GRVCLWLGANVMLEYSYEEAKGVLETSLRNAKEKLKTTNEDLEHLKNQTTTIEVNMARLFNYDVKRRK 191
            +NPRGIP++ F++ V +++   G   +E  +GA  ++Y K K +E +L + + + K KIPE +K L++V  L  K+ EGE L T +NLAD +YA A V C  G+VC+WLGA VM+EYSYEEA+ +LE ++  A EKL    EDL  L++Q  T EVN+AR+FN+DV+RR+
Sbjct:   24 RNPRGIPSSVFVDSVESYMTECGVKTIEPLVGALQQMYSKYKFMETNLQKNRETFKRKIPETQKDLDMVQHLMTKRDEGETLQTQFNLADNVYANASVDCSLGKVCIWLGAQVMVEYSYEEAQELLEKNMATASEKLAQIEEDLSFLRDQIITTEVNIARIFNHDVRRRR 193          
BLAST of EWM22180.1 vs. NCBI_GenBank
Match: gi|675209395|ref|XP_008913582.1| (hypothetical protein PPTG_17473 [Phytophthora parasitica INRA-310] >gi|568006530|gb|ETL80786.1| hypothetical protein L917_18742 [Phytophthora parasitica] >gi|568086134|gb|ETN01027.1| hypothetical protein PPTG_17473 [Phytophthora parasitica INRA-310] >gi|570968664|gb|ETP31783.1| hypothetical protein F442_19373 [Phytophthora parasitica P10297])

HSP 1 Score: 173.711 bits (439), Expect = 3.912e-51
Identity = 79/170 (46.47%), Postives = 115/170 (67.65%), Query Frame = 0
Query:   23 KNPRGIPTATFIEDVGAFLQTLGGVPVETAIGAFNELYGKCKTLENSLGRVKLSMKAKIPEIEKTLELVHVLEGKQAEGEALTTHYNLADTIYAKAEVACH-GRVCLWLGANVMLEYSYEEAKGVLETSLRNAKEKLKTTNEDLEHLKNQTTTIEVNMARLFNYDVKRRK 191
            +NPRGIP+A F++ V  F+   G   +E  +GA  ++Y K K +E SL + + + K KIP+ +K L +V  L  K+ EGE L T +NL+D +YAKA V C  G+VC+WLGA +M+EY Y+EA+ +LE ++  A EKL    EDL  L++Q  T EVN+AR+FN+DV+RR+
Sbjct:   28 RNPRGIPSAVFVDSVDTFMDACGVKNIEPLVGALQQMYSKYKFMETSLQKNRETFKRKIPDTQKDLNMVRHLIAKRDEGETLQTQFNLSDNVYAKASVDCSVGKVCIWLGAQIMVEYPYDEAQELLEKNVATATEKLGQIEEDLSFLRDQIITTEVNIARIFNHDVRRRR 197          
BLAST of EWM22180.1 vs. NCBI_GenBank
Match: gi|566010816|gb|ETI33727.1| (hypothetical protein F443_19598 [Phytophthora parasitica P1569])

HSP 1 Score: 173.711 bits (439), Expect = 4.268e-51
Identity = 79/170 (46.47%), Postives = 115/170 (67.65%), Query Frame = 0
Query:   23 KNPRGIPTATFIEDVGAFLQTLGGVPVETAIGAFNELYGKCKTLENSLGRVKLSMKAKIPEIEKTLELVHVLEGKQAEGEALTTHYNLADTIYAKAEVACH-GRVCLWLGANVMLEYSYEEAKGVLETSLRNAKEKLKTTNEDLEHLKNQTTTIEVNMARLFNYDVKRRK 191
            +NPRGIP+A F++ V  F+   G   +E  +GA  ++Y K K +E SL + + + K KIP+ +K L +V  L  K+ EGE L T +NL+D +YAKA V C  G+VC+WLGA +M+EY Y+EA+ +LE ++  A EKL    EDL  L++Q  T EVN+AR+FN+DV+RR+
Sbjct:   28 RNPRGIPSAVFVDSVDTFMDACGVKNIEPLVGALQQMYSKYKFMETSLQKNRETFKRKIPDTQKDLNMVRHLIAKRDEGETLQTQFNLSDNVYAKASVDCSVGKVCIWLGAQIMVEYPYDEAQELLEKNVATATEKLGQIEEDLSFLRDQIITTEVNIARIFNHDVRRRR 197          
The following BLAST results are available for this feature:
BLAST of EWM22180.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102607|gb|EWM22180.1|1.561e-156100.00prefoldin subunit 3 [Nannochloropsis gaditana][more]
gi|553189609|ref|XP_005855038.1|5.195e-10790.80prefoldin subunit 3 [Nannochloropsis gaditana CCMP... [more]
gi|298714035|emb|CBJ27267.1|1.181e-6758.96conserved unknown protein [Ectocarpus siliculosus][more]
gi|676386961|ref|XP_009036759.1|2.061e-5651.65hypothetical protein AURANDRAFT_26059 [Aureococcus... [more]
gi|695369473|ref|XP_009514063.1|7.005e-5348.24hypothetical protein PHYSODRAFT_320679 [Phytophtho... [more]
gi|301123435|ref|XP_002909444.1|4.401e-5247.06prefoldin subunit 3, putative [Phytophthora infest... [more]
gi|1214703805|gb|OWZ15759.1|5.750e-5248.24Prefoldin subunit 3 [Phytophthora megakarya][more]
gi|953495843|emb|CEG42739.1|1.143e-5147.06prefoldin subunit 3 [Plasmopara halstedii][more]
gi|675209395|ref|XP_008913582.1|3.912e-5146.47hypothetical protein PPTG_17473 [Phytophthora para... [more]
gi|566010816|gb|ETI33727.1|4.268e-5146.47hypothetical protein F443_19598 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8527rna8527Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications