EWM22191.1, cds8483 (CDS) Nannochloropsis gaditana

Overview
NameEWM22191.1
Unique Namecds8483
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:130104..130184 -
Alignment locationKK037249.1:129740..129889 -
Alignment locationKK037249.1:129205..129594 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22191.1
Product60s ribosomal protein l13
Orig transcript idgnl|cribi|Naga_100540g2.15.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:130104..130184 -
KK037249.1supercontigKK037249.1:129740..129889 -
KK037249.1supercontigKK037249.1:129205..129594 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR001380Ribosomal_L13e
Homology
BLAST of EWM22191.1 vs. NCBI_GenBank
Match: gi|585102627|gb|EWM22191.1| (60s ribosomal protein l13 [Nannochloropsis gaditana])

HSP 1 Score: 422.165 bits (1084), Expect = 1.881e-149
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0
Query:    1 MVRHNNVIPNQHFHKDWQTRVKTWFDQPAKKKARRLARKAKAAALAPRPTQLLRPVVHAPTQRYNHKTRLGRGFTMQELKEVGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIRRGKALKAGKGDA 206
            MVRHNNVIPNQHFHKDWQTRVKTWFDQPAKKKARRLARKAKAAALAPRPTQLLRPVVHAPTQRYNHKTRLGRGFTMQELKEVGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIRRGKALKAGKGDA
Sbjct:    1 MVRHNNVIPNQHFHKDWQTRVKTWFDQPAKKKARRLARKAKAAALAPRPTQLLRPVVHAPTQRYNHKTRLGRGFTMQELKEVGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIRRGKALKAGKGDA 206          
BLAST of EWM22191.1 vs. NCBI_GenBank
Match: gi|553180942|ref|XP_005853485.1| (large subunit ribosomal protein L13e [Nannochloropsis gaditana CCMP526] >gi|422295574|gb|EKU22873.1| large subunit ribosomal protein L13e [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 417.157 bits (1071), Expect = 1.909e-147
Identity = 204/206 (99.03%), Postives = 204/206 (99.03%), Query Frame = 0
Query:    1 MVRHNNVIPNQHFHKDWQTRVKTWFDQPAKKKARRLARKAKAAALAPRPTQLLRPVVHAPTQRYNHKTRLGRGFTMQELKEVGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIRRGKALKAGKGDA 206
            MVRHNNVIPNQHFHKDWQTRVKTWF QPAKKKARRLARKAKAAALAPRPTQLLRPVVHAPTQRYNHKTRLGRGFTMQELKE GLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIRRGKALKAGKGDA
Sbjct:    1 MVRHNNVIPNQHFHKDWQTRVKTWFVQPAKKKARRLARKAKAAALAPRPTQLLRPVVHAPTQRYNHKTRLGRGFTMQELKEAGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIRRGKALKAGKGDA 206          
BLAST of EWM22191.1 vs. NCBI_GenBank
Match: gi|298715038|emb|CBJ27745.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 252.292 bits (643), Expect = 2.910e-82
Identity = 122/194 (62.89%), Postives = 144/194 (74.23%), Query Frame = 0
Query:    1 MVRHNNVIPNQHFHKDWQTRVKTWFDQPAKKKARRLARKAKAAALAPRPTQLLRPVVHAPTQRYNHKTRLGRGFTMQELKEVGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIR 194
            MV+HNNV+PN HFHK WQ RV+TWFDQPAKKKARR AR+ KAA +APRPTQLLRP VH PT +YN K RLGRGF ++ELKE G++KK A ++GIAVDHRRTN S ES  ANV RLKEY++ LI+FP G    PK GDSS  E +AA Q TG  +PL    K VEF+ V+ E+     H+  RVARN+ KL GIR
Sbjct:    1 MVKHNNVVPNGHFHKKWQRRVRTWFDQPAKKKARRQARQEKAAKMAPRPTQLLRPAVHCPTIKYNSKVRLGRGFNVEELKEAGISKKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQVTGVTMPLVKADKPVEFLPVTAEMTATSLHSERRVARNEFKLAGIR 194          
BLAST of EWM22191.1 vs. NCBI_GenBank
Match: gi|527206291|gb|EPS71909.1| (hypothetical protein M569_02849 [Genlisea aurea])

HSP 1 Score: 224.557 bits (571), Expect = 2.451e-71
Identity = 116/206 (56.31%), Postives = 148/206 (71.84%), Query Frame = 0
Query:    1 MVRHNNVIPNQHFHKDWQTRVKTWFDQPAKKKARRLARKAKAAALAPRPTQ-LLRPVVHAPTQRYNHKTRLGRGFTMQELKEVGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIRRGKALKAGKGD 205
            MV+HNNV+PN HF K WQ  VKTWF+QPA+K  RR+AR+ KA  + PRPT   LRPVVH  T++YN K R G+GF+++ELK  G+ KK A ++GIAVDHRR N S+E LQANVQRLK YK+KL+VFP  R +K KAGDS+  E  +A Q +G VLP+   K  VE V V+EELK+FRA+  LRV R +++  G R  KA +A K +
Sbjct:    1 MVKHNNVVPNSHFRKHWQDYVKTWFNQPARKTRRRIARQKKAVKIFPRPTAGPLRPVVHCQTRKYNMKVRAGKGFSLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQANVQRLKTYKAKLVVFPR-RARKFKAGDSTAEELASATQVSGPVLPIVGEKPNVELVKVTEELKSFRAYDKLRVERMNKRHAGKRAKKAAEAEKDE 205          
BLAST of EWM22191.1 vs. NCBI_GenBank
Match: gi|1208503090|gb|OWM64850.1| (hypothetical protein CDL15_Pgr028567 [Punica granatum])

HSP 1 Score: 223.402 bits (568), Expect = 6.004e-71
Identity = 115/206 (55.83%), Postives = 147/206 (71.36%), Query Frame = 0
Query:    1 MVRHNNVIPNQHFHKDWQTRVKTWFDQPAKKKARRLARKAKAAALAPRPTQ-LLRPVVHAPTQRYNHKTRLGRGFTMQELKEVGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIRRGKALKAGKGD 205
            MV+HNNV+PN HF K WQ  VKTWF+QPA+K  RRLAR+ KA  + PRPT+  LRPVVH  T +YN K R GRGF+++ELK  G+ KK A ++GIAVDHRR N S+ESLQ NVQRLK YK+KL+VFP  R +K KAGDS+  E  +A Q  G+ +P+   K AVE V V++E+K+F A+  LRV R +++  G R  KA +A K D
Sbjct:    1 MVKHNNVVPNGHFRKHWQNYVKTWFNQPARKVRRRLARQKKAVKIFPRPTEGPLRPVVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRRKNRSLESLQTNVQRLKTYKAKLVVFPR-RPRKFKAGDSTAEELASATQVQGSFMPIVREKPAVELVKVTDEMKSFNAYAKLRVERTNKRHYGARLKKAAEAEKED 205          
BLAST of EWM22191.1 vs. NCBI_GenBank
Match: gi|1021560746|ref|XP_016171623.1| (60S ribosomal protein L13-1 [Arachis ipaensis])

HSP 1 Score: 223.016 bits (567), Expect = 8.705e-71
Identity = 114/206 (55.34%), Postives = 146/206 (70.87%), Query Frame = 0
Query:    1 MVRHNNVIPNQHFHKDWQTRVKTWFDQPAKKKARRLARKAKAAALAPRPTQ-LLRPVVHAPTQRYNHKTRLGRGFTMQELKEVGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIRRGKALKAGKGD 205
            MV+HNNVIPN HF K WQ  VKTWF+QPA+K  RRLAR+ KA  + PRPT   LRP+VH  T +YN K R G+GF+++ELK  G+ KK A ++GIAVDHRR N S+ES+QANVQRLK YK+KL+VFP  R KK KAGDS+  E   A Q  G+ +P+   K +VE V V++E+K F+A+  LR+ R ++K  G R  KA +A K D
Sbjct:    1 MVKHNNVIPNGHFRKHWQNYVKTWFNQPARKTRRRLARQEKAVKIFPRPTAGSLRPIVHGQTLKYNMKVRAGKGFSLEELKAAGIPKKLAPTIGIAVDHRRKNRSLESMQANVQRLKTYKAKLVVFPR-RAKKVKAGDSTAEELANATQVQGSYMPILREKPSVELVKVTDEMKAFKAYYKLRLERTNKKHYGARLKKAAEAEKED 205          
BLAST of EWM22191.1 vs. NCBI_GenBank
Match: gi|1117383948|ref|XP_019462129.1| (PREDICTED: 60S ribosomal protein L13-1-like [Lupinus angustifolius] >gi|1102703225|gb|OIW02254.1| hypothetical protein TanjilG_15137 [Lupinus angustifolius])

HSP 1 Score: 222.631 bits (566), Expect = 1.208e-70
Identity = 115/206 (55.83%), Postives = 144/206 (69.90%), Query Frame = 0
Query:    1 MVRHNNVIPNQHFHKDWQTRVKTWFDQPAKKKARRLARKAKAAALAPRPTQ-LLRPVVHAPTQRYNHKTRLGRGFTMQELKEVGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIRRGKALKAGKGD 205
            MV+HNNVIPN HF K WQ  VKTWF+QPA+K  RRLAR+ KA  + PRPT   LRPVVH  T +YN K + GRGF+++ELK  G+ K+ A ++GIAVDHRR N S+ESLQAN QRLK YK+KL+VFP  R +K KAGDS+  E   A Q  GT LP+P  K  VE V V+EELK F+A+  LR+ R +++  G R  +A  A K +
Sbjct:    1 MVKHNNVIPNGHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVKAGRGFSLEELKAAGIPKRLAPTIGIAVDHRRKNRSLESLQANAQRLKTYKAKLVVFPR-RARKVKAGDSTPEELANATQVQGTYLPIPVEKPTVELVKVTEELKAFKAYYKLRLERTNKRHHGARLKRAADAEKEE 205          
BLAST of EWM22191.1 vs. NCBI_GenBank
Match: gi|813177711|ref|XP_012205325.1| (50S ribosomal protein L13e [Saprolegnia parasitica CBS 223.65] >gi|641529854|gb|KDO24006.1| 50S ribosomal protein L13e [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 222.246 bits (565), Expect = 2.041e-70
Identity = 121/206 (58.74%), Postives = 147/206 (71.36%), Query Frame = 0
Query:    1 MVRHNNVIPNQHFHKDWQTRVKTWFDQPAKKKARRLARKAKAAALAPRPTQ-LLRPVVHAPTQRYNHKTRLGRGFTMQELKEVGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIRRGKALKAGKGD 205
            MV+HNNVIPN HFHKDWQ R+KTWFDQ AKKK+RRL RKAKAAA+APRP   LLRP VH PT +Y  K R GRGFT+ ELKE G+++K A S+GIAVD+RRTN SVESLQANVQRLK YKSKL+VFP  R  KPK GD+S  + +AAVQ TG + P+      V    +++ +KN      LR+A+ D +L G+R+  A      D
Sbjct:    1 MVKHNNVIPNGHFHKDWQNRIKTWFDQAAKKKSRRLTRKAKAAAIAPRPAAGLLRPAVHCPTVKYGSKVRAGRGFTLDELKEAGISRKQALSIGIAVDYRRTNKSVESLQANVQRLKAYKSKLVVFPRKRASKPKQGDASVEDIKAAVQHTGVLFPIARASTEVATAKITDAMKNESVVKTLRLAKADARLVGLRKKMAADKANAD 206          
BLAST of EWM22191.1 vs. NCBI_GenBank
Match: gi|1150710719|ref|XP_020265977.1| (60S ribosomal protein L13-1-like [Asparagus officinalis] >gi|1141989422|gb|ONK70643.1| uncharacterized protein A4U43_C05F35870 [Asparagus officinalis])

HSP 1 Score: 222.246 bits (565), Expect = 2.179e-70
Identity = 113/206 (54.85%), Postives = 145/206 (70.39%), Query Frame = 0
Query:    1 MVRHNNVIPNQHFHKDWQTRVKTWFDQPAKKKARRLARKAKAAALAPRPTQ-LLRPVVHAPTQRYNHKTRLGRGFTMQELKEVGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIRRGKALKAGKGD 205
            MV+HNNVIPN HF K WQ  VKTWFDQPA+K  RR+AR+ KA  + PRPT   LRPVVH  T +YN KTR GRGFT++ELK  G+ KK+A +VGIAVDHRR N S+E LQ+NVQRLKEYK+KL++FP  R  K K+GDS+  E  ++ Q  G  +P+   K  V  + V+EE+K FRA+  LR+ R +++  G R  +A +A K D
Sbjct:    1 MVKHNNVIPNGHFKKHWQNYVKTWFDQPARKTRRRIARQKKAVKIFPRPTAGPLRPVVHCQTLKYNMKTRAGRGFTLEELKMAGIPKKWAPTVGIAVDHRRKNRSLEGLQSNVQRLKEYKAKLVIFPR-RPGKFKSGDSAAEELASSTQVQGDYMPITREKPVVSLIKVTEEMKAFRAYQKLRLERTNKRHHGARLKRAAEAEKED 205          
BLAST of EWM22191.1 vs. NCBI_GenBank
Match: gi|1150746948|ref|XP_020247615.1| (60S ribosomal protein L13-1-like isoform X1 [Asparagus officinalis] >gi|1150746950|ref|XP_020247616.1| 60S ribosomal protein L13-1-like isoform X2 [Asparagus officinalis] >gi|1141975971|gb|ONK57197.1| uncharacterized protein A4U43_C10F17600 [Asparagus officinalis])

HSP 1 Score: 222.246 bits (565), Expect = 2.301e-70
Identity = 114/206 (55.34%), Postives = 145/206 (70.39%), Query Frame = 0
Query:    1 MVRHNNVIPNQHFHKDWQTRVKTWFDQPAKKKARRLARKAKAAALAPRPTQ-LLRPVVHAPTQRYNHKTRLGRGFTMQELKEVGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIRRGKALKAGKGD 205
            MV+HNNVIPN HF K WQ  VKTWFDQPA+K  RR+AR+ KA  + PRPT   LRPVVH  T +YN KTR GRGF+++ELK  G+ KK+A +VGIAVDHRR N S+E LQANVQRLKEYK+KL++FP  R  K K+GDS+  E  ++ Q  G  +P+   K  V  V V+EE+K FRA+  LR+ R +++  G R  +A +A K D
Sbjct:    1 MVKHNNVIPNGHFKKHWQNYVKTWFDQPARKTRRRIARQKKAVKIFPRPTAGPLRPVVHCQTLKYNMKTRAGRGFSLEELKMAGIPKKWAPTVGIAVDHRRKNRSLEGLQANVQRLKEYKAKLVIFPR-RPGKFKSGDSAAEELASSTQVQGDYMPITREKPVVSLVKVTEEMKAFRAYQKLRLERTNKRHHGARLKRAAEAEKED 205          
The following BLAST results are available for this feature:
BLAST of EWM22191.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102627|gb|EWM22191.1|1.881e-149100.0060s ribosomal protein l13 [Nannochloropsis gaditan... [more]
gi|553180942|ref|XP_005853485.1|1.909e-14799.03large subunit ribosomal protein L13e [Nannochlorop... [more]
gi|298715038|emb|CBJ27745.1|2.910e-8262.89conserved unknown protein [Ectocarpus siliculosus][more]
gi|527206291|gb|EPS71909.1|2.451e-7156.31hypothetical protein M569_02849 [Genlisea aurea][more]
gi|1208503090|gb|OWM64850.1|6.004e-7155.83hypothetical protein CDL15_Pgr028567 [Punica grana... [more]
gi|1021560746|ref|XP_016171623.1|8.705e-7155.3460S ribosomal protein L13-1 [Arachis ipaensis][more]
gi|1117383948|ref|XP_019462129.1|1.208e-7055.83PREDICTED: 60S ribosomal protein L13-1-like [Lupin... [more]
gi|813177711|ref|XP_012205325.1|2.041e-7058.7450S ribosomal protein L13e [Saprolegnia parasitica... [more]
gi|1150710719|ref|XP_020265977.1|2.179e-7054.8560S ribosomal protein L13-1-like [Asparagus offici... [more]
gi|1150746948|ref|XP_020247615.1|2.301e-7055.3460S ribosomal protein L13-1-like isoform X1 [Aspar... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8510rna8510Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications