EWM22203.1, cds8469 (CDS) Nannochloropsis gaditana

Overview
NameEWM22203.1
Unique Namecds8469
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:105067..105157 +
Alignment locationKK037249.1:105374..105495 +
Alignment locationKK037249.1:105725..105870 +
Alignment locationKK037249.1:106043..106088 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22203.1
Productglycerol-3-phosphate dehydrogenase
Orig transcript idgnl|cribi|Naga_101365g1.5843.mrna
GeneGPD
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:105067..105157 +
KK037249.1supercontigKK037249.1:105374..105495 +
KK037249.1supercontigKK037249.1:105725..105870 +
KK037249.1supercontigKK037249.1:106043..106088 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0006072glycerol-3-phosphate metabolic process
GO:0055114oxidation-reduction process
GO:0005975carbohydrate metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0009331glycerol-3-phosphate dehydrogenase complex
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO:0016491oxidoreductase activity
GO:0004367glycerol-3-phosphate dehydrogenase [NAD+] activity
Vocabulary: INTERPRO
TermDefinition
IPR0089276-PGluconate_DH_C-like
IPR006168G3P_DH_NAD-dep
IPR0133286PGD_dom_2
IPR006109G3P_DH_NAD-dep_C
Homology
BLAST of EWM22203.1 vs. NCBI_GenBank
Match: gi|585102647|gb|EWM22203.1| (glycerol-3-phosphate dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 272.707 bits (696), Expect = 9.505e-93
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0
Query:    1 MNASAALVTRGVNEVQRLAINLGARSSTLTGLSGVGDTFGTCFGPLSRNRTLGMRLGRGETVEEILASMAEVAEGYATTFSLVEMIEKLPRAHRAERTFPIIYNVKCILDGSCTPQEGVRRLMDTKGRVELWNL 134
            MNASAALVTRGVNEVQRLAINLGARSSTLTGLSGVGDTFGTCFGPLSRNRTLGMRLGRGETVEEILASMAEVAEGYATTFSLVEMIEKLPRAHRAERTFPIIYNVKCILDGSCTPQEGVRRLMDTKGRVELWNL
Sbjct:    1 MNASAALVTRGVNEVQRLAINLGARSSTLTGLSGVGDTFGTCFGPLSRNRTLGMRLGRGETVEEILASMAEVAEGYATTFSLVEMIEKLPRAHRAERTFPIIYNVKCILDGSCTPQEGVRRLMDTKGRVELWNL 134          
BLAST of EWM22203.1 vs. NCBI_GenBank
Match: gi|585105599|gb|EWM24210.1| (glycerol-3-phosphate dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 188.348 bits (477), Expect = 1.347e-55
Identity = 95/133 (71.43%), Postives = 108/133 (81.20%), Query Frame = 0
Query:    2 NASAALVTRGVNEVQRLAINLGARSSTLTGLSGVGDTFGTCFGPLSRNRTLGMRLGRGETVEEILASMAEVAEGYATTFSLVEMIEKLPRAHRAERTFPIIYNVKCILDGSCTPQEGVRRLMDTKGRVELWNL 134
            NA AALVTRG NE+QRLA++LGAR STLTGLSGVGDTFGTCFGPLSRNR LG+RLG+GE +E IL S  EVAEG+AT FSLV++IEK  RA+R E  FPIIY VK IL+G  TP EG+R LM    RVE+WNL
Sbjct:  297 NAMAALVTRGCNEMQRLALSLGARPSTLTGLSGVGDTFGTCFGPLSRNRNLGVRLGKGERLENILGSSTEVAEGHATAFSLVQLIEKTNRAYRRELEFPIIYGVKEILEGKRTPAEGLRDLMAMPVRVEMWNL 429          
BLAST of EWM22203.1 vs. NCBI_GenBank
Match: gi|397582452|gb|EJK52292.1| (hypothetical protein THAOC_28450, partial [Thalassiosira oceanica])

HSP 1 Score: 149.058 bits (375), Expect = 1.459e-43
Identity = 74/132 (56.06%), Postives = 99/132 (75.00%), Query Frame = 0
Query:    2 NASAALVTRGVNEVQRLAINLGARSSTLTGLSGVGDTFGTCFGPLSRNRTLGMRLGRGETVEEILASMAEVAEGYATTFSLVEMIEKLPRAHRAERTFPIIYNVKCILDGSCTPQEGVRRLMDTKGRVELWN 133
            NA + LVTRG  E++RL I LGAR ST++GLSGVGDTFGTCFGPLSRNR  G RLGRGET EEI ASM EVAEG  T+ +LV+MI++  + +R +  +PI++ V  I++G+  P EG++ LM+   R+E ++
Sbjct:   16 NALSGLVTRGCGEMRRLGIYLGARPSTISGLSGVGDTFGTCFGPLSRNRQFGYRLGRGETAEEIRASMTEVAEGVDTSIALVKMIKERCKGYRLDLKYPILFGVAEIIEGNMKPLEGLKGLMNFPTRMENYD 147          
BLAST of EWM22203.1 vs. NCBI_GenBank
Match: gi|1072236068|gb|OEU20796.1| (NAD-dependent glycerol-3-phosphate dehydrogenase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 148.673 bits (374), Expect = 7.738e-41
Identity = 72/132 (54.55%), Postives = 97/132 (73.48%), Query Frame = 0
Query:    2 NASAALVTRGVNEVQRLAINLGARSSTLTGLSGVGDTFGTCFGPLSRNRTLGMRLGRGETVEEILASMAEVAEGYATTFSLVEMIEKLPRAHRAERTFPIIYNVKCILDGSCTPQEGVRRLMDTKGRVELWN 133
            NA + LVTRG NE++RL +  GAR ST+ GLSGVGDTFGTCFGPLSRNR  G RLG+GET+EEILAS +EVAEG  T  ++V +IEK  + +R +  +PI++ +  IL+G  TP EG+  LM+   ++E ++
Sbjct:  219 NAMSGLVTRGCNEMRRLGLTFGARPSTIAGLSGVGDTFGTCFGPLSRNRKFGYRLGKGETMEEILASTSEVAEGVDTALAVVRLIEKECKGYRLDLKYPILFGIARILEGKSTPLEGLELLMNMPMQMENFD 350          
BLAST of EWM22203.1 vs. NCBI_GenBank
Match: gi|551653989|ref|XP_005829771.1| (hypothetical protein GUITHDRAFT_73617 [Guillardia theta CCMP2712] >gi|428173892|gb|EKX42791.1| hypothetical protein GUITHDRAFT_73617 [Guillardia theta CCMP2712])

HSP 1 Score: 147.517 bits (371), Expect = 1.021e-40
Identity = 75/123 (60.98%), Postives = 94/123 (76.42%), Query Frame = 0
Query:    2 NASAALVTRGVNEVQRLAINLGARSSTLTGLSGVGDTFGTCFGPLSRNRTLGMRLGRGETVEEILASMAEVAEGYATTFSLVE-MIEKLPRAHRAERTFPIIYNVKCILDGSCTPQEGVRRLM 123
            NA A LVTRG  E+Q LA  +GA  STL GLSGVGDTFGTCFGPLSRNR LG+RLG+GE +E+IL+S  EVAEGYAT  SLVE ++ K+PR+ R +  FPI++ V  +L G  +P+EG++ LM
Sbjct:  220 NAVAGLVTRGCLEMQTLARAVGASPSTLMGLSGVGDTFGTCFGPLSRNRNLGIRLGQGEKLEDILSSSTEVAEGYATALSLVEFLLTKMPRSFRMDLKFPILFGVAEVLKGERSPREGMKDLM 342          
BLAST of EWM22203.1 vs. NCBI_GenBank
Match: gi|397647202|gb|EJK77600.1| (hypothetical protein THAOC_00555 [Thalassiosira oceanica])

HSP 1 Score: 149.828 bits (377), Expect = 2.391e-40
Identity = 74/132 (56.06%), Postives = 99/132 (75.00%), Query Frame = 0
Query:    2 NASAALVTRGVNEVQRLAINLGARSSTLTGLSGVGDTFGTCFGPLSRNRTLGMRLGRGETVEEILASMAEVAEGYATTFSLVEMIEKLPRAHRAERTFPIIYNVKCILDGSCTPQEGVRRLMDTKGRVELWN 133
            NA + LVTRG  E++RL I LGAR ST++GLSGVGDTFGTCFGPLSRNR  G RLGRGET EEI ASM EVAEG  T+ +LV+MI++  + +R +  +PI++ V  I++G+  P EG++ LM+   R+E ++
Sbjct:  355 NALSGLVTRGCGEMRRLGIYLGARPSTISGLSGVGDTFGTCFGPLSRNRQFGYRLGRGETAEEIRASMTEVAEGVDTSIALVKMIKERCKGYRLDLKYPILFGVAEIIEGNMKPLEGLKGLMNFPTRMENYD 486          
BLAST of EWM22203.1 vs. NCBI_GenBank
Match: gi|223994071|ref|XP_002286719.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220978034|gb|EED96360.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 144.436 bits (363), Expect = 2.447e-39
Identity = 70/132 (53.03%), Postives = 97/132 (73.48%), Query Frame = 0
Query:    2 NASAALVTRGVNEVQRLAINLGARSSTLTGLSGVGDTFGTCFGPLSRNRTLGMRLGRGETVEEILASMAEVAEGYATTFSLVEMIEKLPRAHRAERTFPIIYNVKCILDGSCTPQEGVRRLMDTKGRVELWN 133
            NA + LVTRG  E++RL I LGAR ST++GLSGVGDTFGTCFGPLSRNR  G RLG+GET  EI  SM EVAEG  T+ +LV+MI++  + +R +  +PI++ +  I++G+  P EG++ LM+   R+E ++
Sbjct:  221 NAMSGLVTRGCGEMRRLGIYLGARPSTISGLSGVGDTFGTCFGPLSRNRRFGYRLGKGETAAEIRESMTEVAEGVDTSIALVKMIKERCKGYRLDLKYPILFGMADIIEGNMKPMEGMKALMNFPTRMENYD 352          
BLAST of EWM22203.1 vs. NCBI_GenBank
Match: gi|219111117|ref|XP_002177310.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411845|gb|EEC51773.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 142.51 bits (358), Expect = 1.025e-38
Identity = 70/132 (53.03%), Postives = 95/132 (71.97%), Query Frame = 0
Query:    2 NASAALVTRGVNEVQRLAINLGARSSTLTGLSGVGDTFGTCFGPLSRNRTLGMRLGRGETVEEILASMAEVAEGYATTFSLVEMIEKLPRAHRAERTFPIIYNVKCILDGSCTPQEGVRRLMDTKGRVELWN 133
            NA + LVTRG  E++RL +  GAR ST+ GLSGVGDTFGTCFGPLSRNR  G RLG+GET+EEI AS  EVAEG  T  +LV +I+   + +R +  FPI++ V  IL+G+ TP+EG+  +M+   ++E ++
Sbjct:  217 NAMSGLVTRGCGEMRRLGLTFGARPSTIAGLSGVGDTFGTCFGPLSRNRKFGYRLGKGETMEEIKASSTEVAEGVDTAIALVNLIKTECKGYRLDLKFPILFGVAAILEGNLTPREGLIGIMNMPFQMENFD 348          
BLAST of EWM22203.1 vs. NCBI_GenBank
Match: gi|1210531531|dbj|GAX09887.1| (hypothetical protein FisN_11Lh132 [Fistulifera solaris])

HSP 1 Score: 143.665 bits (361), Expect = 1.117e-38
Identity = 70/132 (53.03%), Postives = 96/132 (72.73%), Query Frame = 0
Query:    2 NASAALVTRGVNEVQRLAINLGARSSTLTGLSGVGDTFGTCFGPLSRNRTLGMRLGRGETVEEILASMAEVAEGYATTFSLVEMIEKLPRAHRAERTFPIIYNVKCILDGSCTPQEGVRRLMDTKGRVELWN 133
            NA + LVTRG  E++RL + LGAR ST+ GLSGVGDTFGTCFGPLSRNR  G RLG+GET+EEILAS +EVAEG  T+ +LV  I++  + +R +  +PI++ V  IL G  TP +G++ +M+    +E ++
Sbjct:  263 NAMSGLVTRGCGEMRRLGLTLGARPSTIAGLSGVGDTFGTCFGPLSRNRQFGYRLGKGETMEEILASSSEVAEGVDTSIALVNFIKQNCKGYRLDLKYPILFGVADILQGKLTPLDGLKGIMNMPFLMENFD 394          
BLAST of EWM22203.1 vs. NCBI_GenBank
Match: gi|1210526761|dbj|GAX14409.1| (hypothetical protein FisN_11Hh132 [Fistulifera solaris])

HSP 1 Score: 143.665 bits (361), Expect = 1.129e-38
Identity = 70/132 (53.03%), Postives = 96/132 (72.73%), Query Frame = 0
Query:    2 NASAALVTRGVNEVQRLAINLGARSSTLTGLSGVGDTFGTCFGPLSRNRTLGMRLGRGETVEEILASMAEVAEGYATTFSLVEMIEKLPRAHRAERTFPIIYNVKCILDGSCTPQEGVRRLMDTKGRVELWN 133
            NA + LVTRG  E++RL + LGAR ST+ GLSGVGDTFGTCFGPLSRNR  G RLG+GET+EEILAS +EVAEG  T+ +LV  I++  + +R +  +PI++ V  IL G  TP +G++ +M+    +E ++
Sbjct:  263 NAMSGLVTRGCGEMRRLGLTLGARPSTIAGLSGVGDTFGTCFGPLSRNRQFGYRLGKGETMEEILASSSEVAEGVDTSIALVNFIKQNCKGYRLDLKYPILFGVADILQGKLTPLDGLKGIMNMPFLMENFD 394          
The following BLAST results are available for this feature:
BLAST of EWM22203.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102647|gb|EWM22203.1|9.505e-93100.00glycerol-3-phosphate dehydrogenase [Nannochloropsi... [more]
gi|585105599|gb|EWM24210.1|1.347e-5571.43glycerol-3-phosphate dehydrogenase [Nannochloropsi... [more]
gi|397582452|gb|EJK52292.1|1.459e-4356.06hypothetical protein THAOC_28450, partial [Thalass... [more]
gi|1072236068|gb|OEU20796.1|7.738e-4154.55NAD-dependent glycerol-3-phosphate dehydrogenase [... [more]
gi|551653989|ref|XP_005829771.1|1.021e-4060.98hypothetical protein GUITHDRAFT_73617 [Guillardia ... [more]
gi|397647202|gb|EJK77600.1|2.391e-4056.06hypothetical protein THAOC_00555 [Thalassiosira oc... [more]
gi|223994071|ref|XP_002286719.1|2.447e-3953.03predicted protein, partial [Thalassiosira pseudona... [more]
gi|219111117|ref|XP_002177310.1|1.025e-3853.03predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210531531|dbj|GAX09887.1|1.117e-3853.03hypothetical protein FisN_11Lh132 [Fistulifera sol... [more]
gi|1210526761|dbj|GAX14409.1|1.129e-3853.03hypothetical protein FisN_11Hh132 [Fistulifera sol... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8496rna8496Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications