EWM22205.1, cds8468 (CDS) Nannochloropsis gaditana

Overview
NameEWM22205.1
Unique Namecds8468
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:100562..100754 +
Alignment locationKK037249.1:100977..101081 +
Alignment locationKK037249.1:101359..101480 +
Alignment locationKK037249.1:101571..101639 +
Alignment locationKK037249.1:101861..101929 +
Alignment locationKK037249.1:102171..102252 +
Alignment locationKK037249.1:102401..102523 +
Alignment locationKK037249.1:102607..102674 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22205.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100291g6.3556.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:100562..100754 +
KK037249.1supercontigKK037249.1:100977..101081 +
KK037249.1supercontigKK037249.1:101359..101480 +
KK037249.1supercontigKK037249.1:101571..101639 +
KK037249.1supercontigKK037249.1:101861..101929 +
KK037249.1supercontigKK037249.1:102171..102252 +
KK037249.1supercontigKK037249.1:102401..102523 +
KK037249.1supercontigKK037249.1:102607..102674 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM22205.1 vs. NCBI_GenBank
Match: gi|585102650|gb|EWM22205.1| (hypothetical protein Naga_100291g6 [Nannochloropsis gaditana])

HSP 1 Score: 568.926 bits (1465), Expect = 0.000e+0
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0
Query:    1 MQAASLYSSTVLLVILAVFMGCTVHAQEHDRSSRPFSRLQSTTGASSSSSSSVNSKQESSDKQTDDDFTKPSSRAGYLLNLTKNTFNPVQVFKDAMNTKGFKAILDNPDIQHRVLKDFPLLGALTGFSTIKDNRRLSAEETKNSFSTGMNTLLNLADDAFFNKVNEPDKVSATLAKMAASSDPGIQNLFKRARAGEQGAVEELQDEFVNQHYSGMDGKAFREISKQHNGDKFKQMPEMMHFIQKDASLAKAFEDLSRMRDSDFPPTEEEMMATVEL 276
            MQAASLYSSTVLLVILAVFMGCTVHAQEHDRSSRPFSRLQSTTGASSSSSSSVNSKQESSDKQTDDDFTKPSSRAGYLLNLTKNTFNPVQVFKDAMNTKGFKAILDNPDIQHRVLKDFPLLGALTGFSTIKDNRRLSAEETKNSFSTGMNTLLNLADDAFFNKVNEPDKVSATLAKMAASSDPGIQNLFKRARAGEQGAVEELQDEFVNQHYSGMDGKAFREISKQHNGDKFKQMPEMMHFIQKDASLAKAFEDLSRMRDSDFPPTEEEMMATVEL
Sbjct:    1 MQAASLYSSTVLLVILAVFMGCTVHAQEHDRSSRPFSRLQSTTGASSSSSSSVNSKQESSDKQTDDDFTKPSSRAGYLLNLTKNTFNPVQVFKDAMNTKGFKAILDNPDIQHRVLKDFPLLGALTGFSTIKDNRRLSAEETKNSFSTGMNTLLNLADDAFFNKVNEPDKVSATLAKMAASSDPGIQNLFKRARAGEQGAVEELQDEFVNQHYSGMDGKAFREISKQHNGDKFKQMPEMMHFIQKDASLAKAFEDLSRMRDSDFPPTEEEMMATVEL 276          
BLAST of EWM22205.1 vs. NCBI_GenBank
Match: gi|553185077|ref|XP_005854196.1| (hypothetical protein NGA_0186800 [Nannochloropsis gaditana CCMP526] >gi|422294860|gb|EKU22160.1| hypothetical protein NGA_0186800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 546.199 bits (1406), Expect = 0.000e+0
Identity = 271/306 (88.56%), Postives = 274/306 (89.54%), Query Frame = 0
Query:    1 MQAASLYSSTVLLVILAVFMGCTVHAQEHDRSSRPFSRLQSTTGASSSSSSSVNSKQESSDKQTDDDFTKPSSRAGYLLNLTKNTFNPVQVFKDAMNTKGFKAILDNPDIQHRVLKDFPLLGALTGFSTIKDNRRLSAEE------------------------------TKNSFSTGMNTLLNLADDAFFNKVNEPDKVSATLAKMAASSDPGIQNLFKRARAGEQGAVEELQDEFVNQHYSGMDGKAFREISKQHNGDKFKQMPEMMHFIQKDASLAKAFEDLSRMRDSDFPPTEEEMMATVEL 276
            MQA SLYSSTVLLV+LAVFMGCTVHAQEHDRSSRPFSRLQSTTGASSSSSSSV SKQESSDKQTDDDFTKPSSRAGYLLNLTKNTFNPVQVFKDAMNTKGFKAILDNPDIQHRVLKDFPLLGALTGFSTIKDNRRLSAEE                              TKNSFSTGMNTLLNLADDAFFNKVNEPDKVSATLAKMAASSDPGIQNLFKRARAGEQGAVEELQDEFVNQHYSGMDGKAFREI+KQHNGDKFKQMPEMMHFIQKDASLAKAFEDLSRMRDSDFPPTE+EMMATVEL
Sbjct:    1 MQAVSLYSSTVLLVVLAVFMGCTVHAQEHDRSSRPFSRLQSTTGASSSSSSSVTSKQESSDKQTDDDFTKPSSRAGYLLNLTKNTFNPVQVFKDAMNTKGFKAILDNPDIQHRVLKDFPLLGALTGFSTIKDNRRLSAEEVRWQIRGKRRRKREGNLIYGRGNDETLNAQTKNSFSTGMNTLLNLADDAFFNKVNEPDKVSATLAKMAASSDPGIQNLFKRARAGEQGAVEELQDEFVNQHYSGMDGKAFREITKQHNGDKFKQMPEMMHFIQKDASLAKAFEDLSRMRDSDFPPTEKEMMATVEL 306          
BLAST of EWM22205.1 vs. NCBI_GenBank
Match: gi|585107197|gb|EWM25436.1| (hypothetical protein Naga_100005g87 [Nannochloropsis gaditana])

HSP 1 Score: 168.318 bits (425), Expect = 1.703e-46
Identity = 87/238 (36.55%), Postives = 137/238 (57.56%), Query Frame = 0
Query:   33 SRPFSRLQSTTG-ASSSSSSSVNSKQESSDKQTDDDFT------------------------KPSSRAGYLLNLTKNTFNPVQVFKDAMNTKGFKAILDNPDIQHRVLKDFPLLGALTGFSTIKDNRRLSAEETKNSFSTGMNTLLNLADDAFFNKVNEPDKVSATLAKMAASSDPGIQNLFKRARAGEQGAVEELQDEFVNQHYSGMDGKAFREISKQHNGDKFKQMPEMMHFIQKD 245
            +RPF+RLQSTTG    +    ++  ++  +++T DD                          +P+ +  +L  + K   +P+++F   + +K F+A+L N +IQHR+LK+ PLL A  GF  I   RRLSA ET   F+ G+  +++ A  AF  KV +P + +AT+AKMAA  +P IQ+LF+RA+ G+  AVEELQD F + H+ G+D +  RE+ + H  +K   MPE+M FI ++
Sbjct:   56 ARPFTRLQSTTGNVVDTHGQQLDHNEQQRNQETLDDRNGKERQQAKRKRRLQQAASGFDQPLRPNDKVAFLQKIAKGNVDPLELFTRGVKSKAFQAVLKNVEIQHRILKEMPLLAAFDGFRQIT-GRRLSARETMEGFAIGVQNVIDFAKVAFI-KVKDPQQTAATIAKMAADPNPAIQSLFRRAQEGDPAAVEELQDVFNDLHFPGVDMRVLREVRRNHTFEKLLSMPEIMRFIDRN 291          
BLAST of EWM22205.1 vs. NCBI_GenBank
Match: gi|585104564|gb|EWM23494.1| (hypothetical protein Naga_100198g11 [Nannochloropsis gaditana])

HSP 1 Score: 104.375 bits (259), Expect = 1.186e-22
Identity = 55/179 (30.73%), Postives = 105/179 (58.66%), Query Frame = 0
Query:   74 RAGYLLNLTKNTFNPVQVFKDAMNTKGFKAILDNPDIQHRVLKDFPLLGALTGFSTIKDNRRLSAEETKNSFSTGMNTLLNLADDAFFNKVNEPDKVSATLAKMAASSDPGIQNLFKRARAGEQGAVEELQDEFVNQHYSGMDGKAFREISKQHNGDKFKQMPEMMHFIQKDASLAKAF 252
            ++ +   + K+  + V++F+    +K F++IL+N +IQHR+++  P+LGA++GF   +  RRL+ +ET   FS G+  LL +   +  + +N P  ++  +A+++ S DP IQ+LFK A   ++ +V EL++      Y G+D +  +++      DK   +PEM  FI +D  +++ F
Sbjct:  131 KSAFFQKVKKDGIDSVELFETLFKSKAFESILENVEIQHRIIEGVPILGAVSGFREAR-GRRLTDQETTAGFSKGVRNLLEMFKTSAKHALN-PTLMNERIAELSKSDDPEIQDLFKGASENDEASVLELKNLAARDLYPGVDLEILQDVMNSLTFDKLLDIPEMARFIDQDPYISRVF 307          
BLAST of EWM22205.1 vs. NCBI_GenBank
Match: gi|553183764|ref|XP_005853961.1| (hypothetical protein NGA_0461700 [Nannochloropsis gaditana CCMP526] >gi|422295096|gb|EKU22395.1| hypothetical protein NGA_0461700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 68.1662 bits (165), Expect = 9.080e-10
Identity = 56/218 (25.69%), Postives = 98/218 (44.95%), Query Frame = 0
Query:   35 PFSRLQSTTGASSSSSSSVNSKQESSDKQTDDDFTKPSSRAGYLLNLTKNTFNPVQVFKDAMNTKGFKAILDNPDIQHRVLKDFPLLGALTGFSTIKDNRRLSAEETKNSFSTGMNTLLNLADDAFFNKVNEPDKVSATLAKMAASSDPGIQNLFKRARAGEQGAVEELQDEFVNQHYSGMDGKAFREISKQHNGDKFKQMPEMMHFIQKDASLAKAF 252
            P  R+QS TG  S ++  V      +         KP      + +  KN  + +++F+ +  + G KAILD+ + QH+++++ PLL A  GF  I   RRL    T   F+ G+N++L    D     + +P   +  L+++ A     I   F  A AG+ GA++ + +    + Y G++    + +S      K     E+M  I  D  +  A 
Sbjct:   25 PMRRMQSLTGVLSGAAKDVMEDTLPA--------YKPDGELTMMQDTWKNGLDIMKLFETSFASPGMKAILDDVETQHKIMENLPLLAAFDGFKEIT-GRRLDDAGTTAGFTAGLNSILKTLPD-MLKTMKDPSISTRALSELLAEDANNISEAFAAASAGDGGAMDTVNEALNKKLYPGVNTDVLKTVSASDPLSKVTGNNEIMRLINDDPIVTAAL 232          
BLAST of EWM22205.1 vs. NCBI_GenBank
Match: gi|585105441|gb|EWM24107.1| (hypothetical protein Naga_100286g4 [Nannochloropsis gaditana])

HSP 1 Score: 67.781 bits (164), Expect = 2.407e-9
Identity = 56/220 (25.45%), Postives = 100/220 (45.45%), Query Frame = 0
Query:   35 PFSRLQSTTGASSSSSSSVNSKQESSDKQTDDDFTKPSSRAGYLLNLTKNTFNPVQVFKDAMNTKGFKAILDNPDIQHRVLKDFPLLGALTGFSTIKDNRRLSAEETKNSFSTGMNTLLNLADDAFFNKVNEPDKVSATLAKMAASSDPGIQNLFKRARAGEQGAVEELQDEFVNQHYSGMDGKAFREISKQHNGDKFKQMPEMMHFIQKDASLAKAFED 254
            P  R+QS TG  S ++  V      +         KP +    + +  KN  + +++F+ +  + G KAILD+ + QH+++++ PLL A  GF  I   RRL    T   F+ G+N++L    D     + +P   +  L+++ A     I   F  A AG+ GA++ + +    + Y G++    + +S      K     E+M  I  D  +  A  +
Sbjct:   25 PMRRMQSLTGVLSGAAKDVMEDTLPA--------YKPDAELTMMQDTWKNGLDIMKLFETSFASPGMKAILDDVETQHKIMENLPLLAAFDGFKEIT-GRRLDDAGTTAGFTAGLNSILKTLPD-MLKTMKDPSISTRALSELLAEDANNISEAFAAASAGDGGAMDTVNEALNKKLYPGVNTDVLKTVSASDPLSKVTGNNEIMRLINDDPIVTAALTE 234          
BLAST of EWM22205.1 vs. NCBI_GenBank
Match: gi|553185360|ref|XP_005854240.1| (hypothetical protein NGA_0024302 [Nannochloropsis gaditana CCMP526] >gi|422294820|gb|EKU22120.1| hypothetical protein NGA_0024302 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 64.6994 bits (156), Expect = 4.043e-9
Identity = 28/83 (33.73%), Postives = 53/83 (63.86%), Query Frame = 0
Query:   73 SRAGYLLNLTKNTFNPVQVFKDAMNTKGFKAILDNPDIQHRVLKDFPLLGALTGFSTIKDNRRLSAEETKNSFSTGMNTLLNL 155
             ++ +   + K+  + V++F+    +K F++IL+N +IQHR+++  P+LGA++GF   +  RRL+ +ET   FS G+  LL +
Sbjct:   76 GKSAFFQKVKKDGIDSVELFETLFKSKAFESILENVEIQHRIIEGVPILGAVSGFREAR-GRRLTDQETTAGFSKGVRNLLEM 157          
The following BLAST results are available for this feature:
BLAST of EWM22205.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585102650|gb|EWM22205.1|0.000e+0100.00hypothetical protein Naga_100291g6 [Nannochloropsi... [more]
gi|553185077|ref|XP_005854196.1|0.000e+088.56hypothetical protein NGA_0186800 [Nannochloropsis ... [more]
gi|585107197|gb|EWM25436.1|1.703e-4636.55hypothetical protein Naga_100005g87 [Nannochlorops... [more]
gi|585104564|gb|EWM23494.1|1.186e-2230.73hypothetical protein Naga_100198g11 [Nannochlorops... [more]
gi|553183764|ref|XP_005853961.1|9.080e-1025.69hypothetical protein NGA_0461700 [Nannochloropsis ... [more]
gi|585105441|gb|EWM24107.1|2.407e-925.45hypothetical protein Naga_100286g4 [Nannochloropsi... [more]
gi|553185360|ref|XP_005854240.1|4.043e-933.73hypothetical protein NGA_0024302 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8495rna8495Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications