EWM22218.1, cds8452 (CDS) Nannochloropsis gaditana

Overview
NameEWM22218.1
Unique Namecds8452
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:60837..61031 +
Alignment locationKK037249.1:61291..61407 +
Alignment locationKK037249.1:61605..61751 +
Alignment locationKK037249.1:61920..61982 +
Alignment locationKK037249.1:62148..62241 +
Alignment locationKK037249.1:62544..62671 +
Alignment locationKK037249.1:62843..63038 +
Alignment locationKK037249.1:63290..63356 +
Alignment locationKK037249.1:63461..63974 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22218.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100555g1.5211.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:60837..61031 +
KK037249.1supercontigKK037249.1:61291..61407 +
KK037249.1supercontigKK037249.1:61605..61751 +
KK037249.1supercontigKK037249.1:61920..61982 +
KK037249.1supercontigKK037249.1:62148..62241 +
KK037249.1supercontigKK037249.1:62544..62671 +
KK037249.1supercontigKK037249.1:62843..63038 +
KK037249.1supercontigKK037249.1:63290..63356 +
KK037249.1supercontigKK037249.1:63461..63974 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM22218.1 vs. NCBI_GenBank
Match: gi|585102668|gb|EWM22218.1| (hypothetical protein Naga_100555g1 [Nannochloropsis gaditana])

HSP 1 Score: 1041.95 bits (2693), Expect = 0.000e+0
Identity = 506/506 (100.00%), Postives = 506/506 (100.00%), Query Frame = 0 
Query:    1 MDVRAHKCLSPLTFPLPVSYRLSPPFFCPLNPIHRVVSPFLSPHVPLRSLSTKTFKHLLASPNIRVRHENTLFLLFQIYFAQKEDWQGDTPEEREKSRRAAVEEVLPSLRFPRMSSDFLSDVVAHSSLFAESPSATHLLVEALAYKSLSRLRQDRWIRLVRNELRIEHKAAQFKINQKAGIKPCPSEVQAAVREAESASSFNPVKSEPFRGTDVESCFSRLQDRTAVLQSQFITFAVDFSLQACLQLQPNQGLFSAVHECCGYLWTVQLVRLPIASIAPPSNPQAIRPSPSTCFTPSSSDRMGLWLHLLPMKPYQLCFRRTAWRQPHLDPFRWKGRQRQHQVALSLLSLSAITCGGGTFPQAEGGSEGVVSDCLHAERLFPRTGRGGPGVPRGPRRQFFDEGGGIDAHRGLGECERPVNRKTDAGSCTVARCRVKDGGIEVEFGTVVVGATECWGTFYVKETCDGETSDAHPGPADHVVTCGRQRFCLGSFCGESNVYWYWNLYQK 506
            MDVRAHKCLSPLTFPLPVSYRLSPPFFCPLNPIHRVVSPFLSPHVPLRSLSTKTFKHLLASPNIRVRHENTLFLLFQIYFAQKEDWQGDTPEEREKSRRAAVEEVLPSLRFPRMSSDFLSDVVAHSSLFAESPSATHLLVEALAYKSLSRLRQDRWIRLVRNELRIEHKAAQFKINQKAGIKPCPSEVQAAVREAESASSFNPVKSEPFRGTDVESCFSRLQDRTAVLQSQFITFAVDFSLQACLQLQPNQGLFSAVHECCGYLWTVQLVRLPIASIAPPSNPQAIRPSPSTCFTPSSSDRMGLWLHLLPMKPYQLCFRRTAWRQPHLDPFRWKGRQRQHQVALSLLSLSAITCGGGTFPQAEGGSEGVVSDCLHAERLFPRTGRGGPGVPRGPRRQFFDEGGGIDAHRGLGECERPVNRKTDAGSCTVARCRVKDGGIEVEFGTVVVGATECWGTFYVKETCDGETSDAHPGPADHVVTCGRQRFCLGSFCGESNVYWYWNLYQK
Sbjct:    1 MDVRAHKCLSPLTFPLPVSYRLSPPFFCPLNPIHRVVSPFLSPHVPLRSLSTKTFKHLLASPNIRVRHENTLFLLFQIYFAQKEDWQGDTPEEREKSRRAAVEEVLPSLRFPRMSSDFLSDVVAHSSLFAESPSATHLLVEALAYKSLSRLRQDRWIRLVRNELRIEHKAAQFKINQKAGIKPCPSEVQAAVREAESASSFNPVKSEPFRGTDVESCFSRLQDRTAVLQSQFITFAVDFSLQACLQLQPNQGLFSAVHECCGYLWTVQLVRLPIASIAPPSNPQAIRPSPSTCFTPSSSDRMGLWLHLLPMKPYQLCFRRTAWRQPHLDPFRWKGRQRQHQVALSLLSLSAITCGGGTFPQAEGGSEGVVSDCLHAERLFPRTGRGGPGVPRGPRRQFFDEGGGIDAHRGLGECERPVNRKTDAGSCTVARCRVKDGGIEVEFGTVVVGATECWGTFYVKETCDGETSDAHPGPADHVVTCGRQRFCLGSFCGESNVYWYWNLYQK 506
[Close]
BLAST of EWM22218.1 vs. NCBI_GenBank
Match: gi|553186465|ref|XP_005854424.1| (hypothetical protein NGA_0235700, partial [Nannochloropsis gaditana CCMP526] >gi|422294637|gb|EKU21937.1| hypothetical protein NGA_0235700, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 402.905 bits (1034), Expect = 2.415e-136
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0 
Query:  114 MSSDFLSDVVAHSSLFAESPSATHLLVEALAYKSLSRLRQDRWIRLVRNELRIEHKAAQFKINQKAGIKPCPSEVQAAVREAESASSFNPVKSEPFRGTDVESCFSRLQDRTAVLQSQFITFAVDFSLQACLQLQPNQGLFSAVHECCGYLWTVQLVRLPIASIAPPSNPQAIRPSPSTCFTPSSSDRMGLWLHLLPMKP 313
            MSSDFLSDVVAHSSLFAESPSATHLLVEALAYKSLSRLRQDRWIRLVRNELRIEHKAAQFKINQKAGIKPCPSEVQAAVREAESASSFNPVKSEPFRGTDVESCFSRLQDRTAVLQSQFITFAVDFSLQACLQLQPNQGLFSAVHECCGYLWTVQLVRLPIASIAPPSNPQAIRPSPSTCFTPSSSDRMGLWLHLLPMKP
Sbjct:    1 MSSDFLSDVVAHSSLFAESPSATHLLVEALAYKSLSRLRQDRWIRLVRNELRIEHKAAQFKINQKAGIKPCPSEVQAAVREAESASSFNPVKSEPFRGTDVESCFSRLQDRTAVLQSQFITFAVDFSLQACLQLQPNQGLFSAVHECCGYLWTVQLVRLPIASIAPPSNPQAIRPSPSTCFTPSSSDRMGLWLHLLPMKP 200
The following BLAST results are available for this feature:
BLAST of EWM22218.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585102668|gb|EWM22218.1|0.000e+0100.00hypothetical protein Naga_100555g1 [Nannochloropsi... [more]
gi|553186465|ref|XP_005854424.1|2.415e-136100.00hypothetical protein NGA_0235700, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8479rna8479Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications