EWM22243.1, cds8417 (CDS) Nannochloropsis gaditana

Overview
NameEWM22243.1
Unique Namecds8417
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:690708..691322 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22243.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100195g1.679.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:690708..691322 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM22243.1 vs. NCBI_GenBank
Match: gi|585102701|gb|EWM22243.1| (hypothetical protein Naga_100195g1 [Nannochloropsis gaditana])

HSP 1 Score: 407.527 bits (1046), Expect = 1.006e-143
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0 
Query:    1 MSSGSRNAGTAFRSRRRPFPEVWEGVDAEEAEITVHEGKLSNYRALNQPKAPSSLVRTAGDKINVAEKEKIDEGDGRRAEAEGNRQGAAEEEEEEEEQEEKEIGNARREDQGDSTSSSSTRVRADLGNQRPSKRHRPRRPFAHIKADILRAKTLVRRAQEEARLKTLQSSSTKWQRLLEGVCGGAGTLGTLASVGLLARKATGN 204
            MSSGSRNAGTAFRSRRRPFPEVWEGVDAEEAEITVHEGKLSNYRALNQPKAPSSLVRTAGDKINVAEKEKIDEGDGRRAEAEGNRQGAAEEEEEEEEQEEKEIGNARREDQGDSTSSSSTRVRADLGNQRPSKRHRPRRPFAHIKADILRAKTLVRRAQEEARLKTLQSSSTKWQRLLEGVCGGAGTLGTLASVGLLARKATGN
Sbjct:    1 MSSGSRNAGTAFRSRRRPFPEVWEGVDAEEAEITVHEGKLSNYRALNQPKAPSSLVRTAGDKINVAEKEKIDEGDGRRAEAEGNRQGAAEEEEEEEEQEEKEIGNARREDQGDSTSSSSTRVRADLGNQRPSKRHRPRRPFAHIKADILRAKTLVRRAQEEARLKTLQSSSTKWQRLLEGVCGGAGTLGTLASVGLLARKATGN 204
[Close]
BLAST of EWM22243.1 vs. NCBI_GenBank
Match: gi|553183479|ref|XP_005853906.1| (hypothetical protein NGA_0463900 [Nannochloropsis gaditana CCMP526] >gi|422295161|gb|EKU22460.1| hypothetical protein NGA_0463900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 338.576 bits (867), Expect = 1.896e-116
Identity = 189/196 (96.43%), Postives = 190/196 (96.94%), Query Frame = 0 
Query:    1 MSSGSRNAGTAFRSRRRPFPEVWEGVDAEEAEITVHEGKLSNYRALNQPKAPSSLVRTAGDKINVAEKEKIDEGDGRRAEAEGNRQGAAEEEEEEEEQEEKEIGNARREDQGDSTSSSSTRVRADLGNQRPSKRHRPRRPFAHIKADILRAKTLVRRAQEEARLKTLQSSSTKWQRLLEGVCGGAGTLGTLASVGL 196
            MSSGSRNAGTAFRSRRRPFPEVWEGVDAEEAEITVHEGKLSNYRALNQPKAPSSLVRTAGDKINVAEKEKIDEGDGRRAEAEGNRQGAAEEEEEEEEQEEKEIGNARREDQGDSTSSSSTRVRADLGNQRPSKRHRPRRPFAHIKADILRAKTLVRRAQEEARLKTLQSSSTKWQRLLEGVCGGAGT G     G+
Sbjct:    1 MSSGSRNAGTAFRSRRRPFPEVWEGVDAEEAEITVHEGKLSNYRALNQPKAPSSLVRTAGDKINVAEKEKIDEGDGRRAEAEGNRQGAAEEEEEEEEQEEKEIGNARREDQGDSTSSSSTRVRADLGNQRPSKRHRPRRPFAHIKADILRAKTLVRRAQEEARLKTLQSSSTKWQRLLEGVCGGAGTRGYACFCGV 196
The following BLAST results are available for this feature:
BLAST of EWM22243.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585102701|gb|EWM22243.1|1.006e-143100.00hypothetical protein Naga_100195g1 [Nannochloropsi... [more]
gi|553183479|ref|XP_005853906.1|1.896e-11696.43hypothetical protein NGA_0463900 [Nannochloropsis ... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8444rna8444Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications