EWM22283.1, cds8390 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22283.1 vs. NCBI_GenBank
Match: gi|585102756|gb|EWM22283.1| (dsh domain protein [Nannochloropsis gaditana]) HSP 1 Score: 1471.45 bits (3808), Expect = 0.000e+0 Identity = 731/731 (100.00%), Postives = 731/731 (100.00%), Query Frame = 0
Query: 1 MTTEVYRNMLYTGDAGELDQVFAVVFDEFHYMNDPERGTVWEESVILSPPHILFVALSATIANVGQVAGWISTVHGPTRTVLSHFRPVPLKYYFIDNEGIYRLFDDDDAGPGAPKGLTTLVRQSAVGMGAGGGRGGGAGGGAGKRRSDEKEKVVMVASGPGGKKKIAMVEAPQPVNDFLRRRALRERRLLAESAGIGGREGKGSRSMKGGAGFGKGKRPPDGIRFTAWYRDLVDALNRRDLLPAIVFIFSRAGCDRAAAEVGGIASKLGLLSHAEKKQIKDRLSAFRLANPQVPLEKEKVRLLLCGLATHHAGLLPVYKALVEELFNENLIRVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGRAGRRGKDTMGHVVLMRSRSEDALDAFNLLCAPVDSIRSHFRSSYAMVVNILRTRDLESCKLLVERSFGNYLKAYSLGEEQEVDIANRDELKGRLGGVDAGELRMYEDMQEKLMKATRAERNLKREAAKLEEKYVKAVLGAVRLGAGLLLRDGRTLALIGEATLPHPLTNTQLNLYVGLSQNGKLVAVSIGDIRSVEAEKDGLDVETAFQISLLLEGTAQGGLLWRPAGGSGGGAGGGSGTLTFVAEPVDPHSQEAQDLAAYLLEQGQRVPSLPLPMPSPDLVRQQALVASLQEQIGLSPLSGLGEAASASLLAVRNELERVERRIKKREKTLRGVRQKEWEDFLAAVDLLEGR 731
MTTEVYRNMLYTGDAGELDQVFAVVFDEFHYMNDPERGTVWEESVILSPPHILFVALSATIANVGQVAGWISTVHGPTRTVLSHFRPVPLKYYFIDNEGIYRLFDDDDAGPGAPKGLTTLVRQSAVGMGAGGGRGGGAGGGAGKRRSDEKEKVVMVASGPGGKKKIAMVEAPQPVNDFLRRRALRERRLLAESAGIGGREGKGSRSMKGGAGFGKGKRPPDGIRFTAWYRDLVDALNRRDLLPAIVFIFSRAGCDRAAAEVGGIASKLGLLSHAEKKQIKDRLSAFRLANPQVPLEKEKVRLLLCGLATHHAGLLPVYKALVEELFNENLIRVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGRAGRRGKDTMGHVVLMRSRSEDALDAFNLLCAPVDSIRSHFRSSYAMVVNILRTRDLESCKLLVERSFGNYLKAYSLGEEQEVDIANRDELKGRLGGVDAGELRMYEDMQEKLMKATRAERNLKREAAKLEEKYVKAVLGAVRLGAGLLLRDGRTLALIGEATLPHPLTNTQLNLYVGLSQNGKLVAVSIGDIRSVEAEKDGLDVETAFQISLLLEGTAQGGLLWRPAGGSGGGAGGGSGTLTFVAEPVDPHSQEAQDLAAYLLEQGQRVPSLPLPMPSPDLVRQQALVASLQEQIGLSPLSGLGEAASASLLAVRNELERVERRIKKREKTLRGVRQKEWEDFLAAVDLLEGR
Sbjct: 1 MTTEVYRNMLYTGDAGELDQVFAVVFDEFHYMNDPERGTVWEESVILSPPHILFVALSATIANVGQVAGWISTVHGPTRTVLSHFRPVPLKYYFIDNEGIYRLFDDDDAGPGAPKGLTTLVRQSAVGMGAGGGRGGGAGGGAGKRRSDEKEKVVMVASGPGGKKKIAMVEAPQPVNDFLRRRALRERRLLAESAGIGGREGKGSRSMKGGAGFGKGKRPPDGIRFTAWYRDLVDALNRRDLLPAIVFIFSRAGCDRAAAEVGGIASKLGLLSHAEKKQIKDRLSAFRLANPQVPLEKEKVRLLLCGLATHHAGLLPVYKALVEELFNENLIRVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGRAGRRGKDTMGHVVLMRSRSEDALDAFNLLCAPVDSIRSHFRSSYAMVVNILRTRDLESCKLLVERSFGNYLKAYSLGEEQEVDIANRDELKGRLGGVDAGELRMYEDMQEKLMKATRAERNLKREAAKLEEKYVKAVLGAVRLGAGLLLRDGRTLALIGEATLPHPLTNTQLNLYVGLSQNGKLVAVSIGDIRSVEAEKDGLDVETAFQISLLLEGTAQGGLLWRPAGGSGGGAGGGSGTLTFVAEPVDPHSQEAQDLAAYLLEQGQRVPSLPLPMPSPDLVRQQALVASLQEQIGLSPLSGLGEAASASLLAVRNELERVERRIKKREKTLRGVRQKEWEDFLAAVDLLEGR 731
BLAST of EWM22283.1 vs. NCBI_GenBank
Match: gi|553190155|ref|XP_005855138.1| (type iii restriction res subunit [Nannochloropsis gaditana CCMP526] >gi|422293920|gb|EKU21220.1| type iii restriction res subunit [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 716.457 bits (1848), Expect = 0.000e+0 Identity = 355/356 (99.72%), Postives = 356/356 (100.00%), Query Frame = 0
Query: 207 MKGGAGFGKGKRPPDGIRFTAWYRDLVDALNRRDLLPAIVFIFSRAGCDRAAAEVGGIASKLGLLSHAEKKQIKDRLSAFRLANPQVPLEKEKVRLLLCGLATHHAGLLPVYKALVEELFNENLIRVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGRAGRRGKDTMGHVVLMRSRSEDALDAFNLLCAPVDSIRSHFRSSYAMVVNILRTRDLESCKLLVERSFGNYLKAYSLGEEQEVDIANRDELKGRLGGVDAGELRMYEDMQEKLMKATRAERNLKREAAKLEEKYVKAVLGAVRLGAGLLLRDGRTLALIGEATLPHPLTNTQLNLYVGLSQNGKL 562
MKGGAGFGKGKRPPDGIRFTAWYRDLVDALNRRDLLPAIVFIFSRAGCDRAAAEVGGIASKLGLLSHAEKKQIKDRLSAFRLANPQVPLEKEKVRLLLCGLATHHAGLLPVYKALVEELFNENLIRVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGRAGRRGKDTMGHVVLMRSRSEDALDAFNLLCAPVDSIRSHFRSSYAMVVNILRTRDLESCKLLVERSFGNYLKAYSLGEEQEVDIANRDELKGRLGGVDAGELRMYED+QEKLMKATRAERNLKREAAKLEEKYVKAVLGAVRLGAGLLLRDGRTLALIGEATLPHPLTNTQLNLYVGLSQNGKL
Sbjct: 1 MKGGAGFGKGKRPPDGIRFTAWYRDLVDALNRRDLLPAIVFIFSRAGCDRAAAEVGGIASKLGLLSHAEKKQIKDRLSAFRLANPQVPLEKEKVRLLLCGLATHHAGLLPVYKALVEELFNENLIRVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGRAGRRGKDTMGHVVLMRSRSEDALDAFNLLCAPVDSIRSHFRSSYAMVVNILRTRDLESCKLLVERSFGNYLKAYSLGEEQEVDIANRDELKGRLGGVDAGELRMYEDLQEKLMKATRAERNLKREAAKLEEKYVKAVLGAVRLGAGLLLRDGRTLALIGEATLPHPLTNTQLNLYVGLSQNGKL 356
BLAST of EWM22283.1 vs. NCBI_GenBank
Match: gi|873237812|emb|CEL97007.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 354.369 bits (908), Expect = 7.680e-104 Identity = 227/576 (39.41%), Postives = 319/576 (55.38%), Query Frame = 0
Query: 1 MTTEVYRNMLYTGDAGELDQ-----------VFAVVFDEFHYMNDPERGTVWEESVILSPPHILFVALSATIANVGQVAGWISTVHGPTRTVLSHFRPVPLKYYFIDNEGIYRLFDDDDAGPGAPKGLTTLVRQSAVGMGAGG--GRGGGAGGGAGKRRSDEKEKVVMVASGPG----GKKKI-AMVEAPQP-VNDFLRRRA----------LRERRLLA-ESAGIGGREGKGSRSMKGGAGFGKGKRPPDGIRFTAWYRDLVDALNRRDLLPAIVFIFSRAGCDRAAAEVGGIASKLGLLSHAEKKQIKDRLSAFRLANPQVPLEKEKVRLLLCGLATHHAGLLPVYKALVEELFNENLIRVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGRAGRRGKDTMGHVVLMRSRSEDALDAFNLLCAPVDSIRSHFRSSYAMVVNILRTRDLESCKLLVERSFGNYLKAYSLGEEQEVDIANRDELKGRLG---------GVDAGELRMYEDMQEKLMKATRAERNLKREAAKLEEKYVKAVLGAVRLGAGLLLRDGRTLALIG 537
MTTEV+RN+LY G+A D+ +V+FDEFHY+NDP RGTVWEE VI P HI V LSAT+AN + W++ VHGPT V+S RPVPL+Y F N+G+Y LF D +AGPGA G+ L + GG GK + +K + ++ P K I ++V+ +P + LRR++ + ++L++ + + EG+ RS++ K+ D T LV + ++ LLPAI+F+FSR+GCD +A + A + LLS AEK+ ++ +L F NP++ +E ++ LL G+ +HHAGLLP+YK L+EELFN NLI+V+FATETLAAGVNMPAR T I+ L K + L SQLLQMAGRAGRRGKD G VVL+RS DA +A L AP+DSI+S FR +Y + N+LR RDL + L+E+SFG +L+A E ++I + K R+ GVD EL +Y ++L ++ A V +L R G + L +G A +G
Sbjct: 142 MTTEVFRNILY-GEAIREDEYSYVPSKLTGETVSVIFDEFHYINDPSRGTVWEECVINCPKHINIVGLSATMANPMDLKDWLAGVHGPTDLVVSEHRPVPLRYMFATNKGLYPLFRDAEAGPGARNGVPLLEGEEEDMAAEEDILELAGGLRASEGKIITPKKPRAPLIPLNPVFEDLRKDTIRSLVKRHRPGIEARLRRQSNNGGRGGRRARQLKKLMSYDDDDVDQFEGRKERSLQS---LVSAKQIADA--ETPTLSKLVSQMRKKQLLPAIIFMFSRSGCDSSARRLA--ADSMELLSEAEKQAVQAKLREFAQENPELLIEPWRIGLLRKGIGSHHAGLLPLYKILLEELFNANLIKVLFATETLAAGVNMPARTTAITVLRKYGSEGLTRLSTSQLLQMAGRAGRRGKDHEGSVVLIRSDRTDAREAAMTLLAPLDSIKSQFRITYGLATNVLRVRDLSKSRELIEKSFGVFLQARRREAEGRMEILDPAVAKERINDTRQRLREMGVDMNELDIYRRAFQRLQAEKDWLSTVRTSAEADRAAAVSKMLPTFRKGGAVELINGEVGAFVG 709
BLAST of EWM22283.1 vs. NCBI_GenBank
Match: gi|546320535|ref|XP_005717307.1| (unnamed protein product [Chondrus crispus] >gi|515797393|emb|CDF77523.1| unnamed protein product [Chondrus crispus]) HSP 1 Score: 254.218 bits (648), Expect = 3.229e-68 Identity = 154/384 (40.10%), Postives = 224/384 (58.33%), Query Frame = 0
Query: 179 LRRRALRERRLLAESAGIGGREGKGSRSMKGGAGFGKGKRPPDGIRFTAWYRD----------LVDALNRRDLLPAIVFIFSRAGCDRAAAEVGGIASKLGLLSHAEKKQIKDRLSAFRLANPQVPLEKEKVRLLLCGLATHHAGLLPVYKALVEELFNENLIRVVFATETLAAGVNMPARATVISTLSKKIGKV-TINLQPSQLLQMAGRAGRRGKDTMGHVVLMRSRSEDALDAFNLLCAPVDSIRSHFRSSYAMVVNILRTRDLESCKLLVERSFGNYLKAYSLGEEQEVDIANR--------------------DELKGRLGGVDAGELRMYEDMQEKLMKATRAERNLKREAAKLEEKYVKAVLGAVRLGAGLLLRDGR 531
L + LR + L + GR + + G KGK R RD +V L+R D+LP I+FIFSRAGCDRAA V + + L+S E+++I++RL AF +P + ++ +++ L L G+A+HHAGLLP++K VEELF + LI+VVFATETLAAG+NMPAR TVIS+LSK+ G ++L S++LQMAGRAGRRGKD +GH V++RSR+E AL+AF +L A VD+++S F +Y MV+N+L R LE K LV+RSFGN+L+ L E NR +E + + VD +LR Y E++ RA L +++ +++++ ++ L G LLLR+ +
Sbjct: 353 LHPKLLRRVKDLKDVRDRNGRAQRNRGDSRDGIEVMKGKYHEIATRSKKRSRDRYAEIPSFPYVVRNLSRNDMLPCIIFIFSRAGCDRAA--VAASSERTELVSVKERERIRERLDAFVAEHPGL-VQADRLNLALQGIASHHAGLLPLWKLCVEELFQDGLIKVVFATETLAAGINMPARTTVISSLSKRAGDAGIVSLTTSEVLQMAGRAGRRGKDVLGHSVVLRSRNEGALEAFKVLTADVDALQSKFTPNYGMVLNLLSARPLEDAKKLVDRSFGNFLREKQLNEVAYQSTGNRSLPGNIEAIVREKLALESVLEEARTIVSSVDEKQLRTYVKSLERVKAEKRALSFLVQQSIEMDDELIEETLTFAPTGTKLLLREKK 733 HSP 2 Score: 137.117 bits (344), Expect = 1.500e-29 Identity = 66/114 (57.89%), Postives = 79/114 (69.30%), Query Frame = 0
Query: 1 MTTEVYRNMLYTGDAGEL-------DQVFAVVFDEFHYMNDPERGTVWEESVILSPPHILFVALSATIANVGQVAGWISTVHGPTRTVLSHFRPVPLKYYFIDNEGIYRLFDDD 107
MTTEVYRNMLY D+ E+ D +FAVVFDEFHY+ND +RGTVWEESVI SP H+L VALSAT++N V W S V G T + S RPVPLK+ + D +G+ LF DD
Sbjct: 214 MTTEVYRNMLY-ADSTEVVSYRSVTDDLFAVVFDEFHYLNDRDRGTVWEESVINSPSHVLLVALSATMSNTADVKDWFSNVQGGTALIESSVRPVPLKFGYCDQQGMTPLFADD 326
BLAST of EWM22283.1 vs. NCBI_GenBank
Match: gi|1214780947|ref|WP_088892101.1| (DEAD/DEAH box helicase [Leptolyngbya ohadii]) HSP 1 Score: 248.054 bits (632), Expect = 3.021e-67 Identity = 181/529 (34.22%), Postives = 275/529 (51.98%), Query Frame = 0
Query: 207 MKGGAGFGKGKRPPDGIRFTAWYRDLVDALNRRDLLPAIVFIFSRAGCDRAAAEVGGIASKLGLLSHAEKKQIKDRLSAFRLANPQVPLEKEKVRLLLCGLATHHAGLLPVYKALVEELFNENLIRVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGRAGRRGKDTMGHVVLMRSRSEDALDAFNLLCAPVDSIRSHFRSSYAMVVNILRTRDLESCKLLVERSFGNYLKAYSLGEEQEVD---IANRDELKGRLGGVDAGELRMYEDMQEKLMKATRAERNLKREAAKLEEKYVKAVLGAVRLGAGLLLRDGRTLALIGEATLPHPLTNT-QLNLYVGLSQNGKLVAVSIGDIRSVEAEKDGLDVETAFQISLLLEGTAQGGLLWRPAGGS---GGGAGGGSGTLTFVAEPVDPHSQEAQDLAAYLLEQGQRVPSLPLPMPSPDLVRQQALVASLQEQIGLSPLSGLGEAASASLLAVRNELERVERRIKKREKTLRGVRQKEWEDFLAAVDLL 728
+K G KG++ GI F L+ L +RD+LPAI FIFSR GCDRA + S L L++ E +K+++ AF +P+ + L G+A+HHAG+LP +K L+EELF + LI+VVFATETLAAG+NMPAR TVIS+LSK+ L S+ LQMAGRAGRRG D GHVV ++S E A +A L + D + S F SY MV+N+L+T +E + LVERSFG+YL L +Q+ +A + K ++ ++A + YE + E+L + R + L+ +A +++ V A+ A + LL + +A+ ATL L + Q V L Q+ + V++ D+ + AE L AQ L P S G G TL V + P QD+A P++ +QQA V +++EQI PL LG+ +L+ + + +E +++ R+ + Q+ W++FL+ +++L
Sbjct: 224 LKPKGGKPKGRQEAPGIEF------LLSQLQQRDMLPAIYFIFSRRGCDRAVENL----SHLTLVNPREAASLKEQIDAFLERSPEAA-RTGHIEPLYRGIASHHAGVLPAWKGLIEELFQQGLIKVVFATETLAAGINMPARTTVISSLSKRTDHGHRLLNASEFLQMAGRAGRRGMDLQGHVVTVQSPYEGASEAAYLATSKADPLVSQFSPSYGMVLNLLQTHSIEEAQDLVERSFGHYLSTLHLKPQQQAINDLVAEIEHQKAQIKDINADLVANYEKLSERLREERRLLKTLQHQAMEMQADQV-AMAVAFAVSGTLLTIKTKQMAVPLSATLVMKLPGSGQFPYLVCLGQDNRWYVVAVADVVGLHAEYPRL---------------AQVDRLAPPEDLSPKVGSVKKGDESTLAIVR--LMPSINAEQDIA-------------------PEVQQQQARVKAIEEQIQTHPLRQLGD--PGNLIKRQKRIWDLEEKLRDRQGKFQQYSQRYWQEFLSLMEVL 702 HSP 2 Score: 137.502 bits (345), Expect = 8.999e-30 Identity = 68/135 (50.37%), Postives = 89/135 (65.93%), Query Frame = 0
Query: 1 MTTEVYRNMLYTGDAGELD----QVFAVVFDEFHYMNDPERGTVWEESVILSPPHILFVALSATIANVGQVAGWISTVHGPTRTVLSHFRPVPLKYYFIDNEGIYRLFDDDDAGPGA---PKGLTTLVRQSAVGM 128
MTTE++RNMLY G++ V AVV DE HYMND +RGTVWEES+I +PP I VALSATIAN Q+ WI VHGPT+ + S FRPVPL+++F + +G++ L +D++ PKG RQ A G+
Sbjct: 106 MTTEIFRNMLYGTPIGQVGTSVIDVEAVVLDECHYMNDRQRGTVWEESIIYAPPGIQLVALSATIANSDQLTDWIDKVHGPTKLIYSDFRPVPLQFHFCNPKGLFPLLNDNNKAINPRLKPKGGKPKGRQEAPGI 240
BLAST of EWM22283.1 vs. NCBI_GenBank
Match: gi|521298084|ref|WP_020462352.1| (RNA helicase [Frankia sp. EAN1pec] >gi|158112035|gb|ABW14232.1| DEAD/DEAH box helicase domain protein [Frankia sp. EAN1pec]) HSP 1 Score: 249.595 bits (636), Expect = 3.061e-67 Identity = 192/581 (33.05%), Postives = 271/581 (46.64%), Query Frame = 0
Query: 1 MTTEVYRNMLYTGDAGE--LDQVFAVVFDEFHYMNDPERGTVWEESVILSPPHILFVALSATIANVGQVAGWISTVHGPTRTVLSHFRPVPLKYYFIDNEGIYRLFDDDDAG--PGAPKGLTTLVRQSAVGMGAGGGRGGGAGGGAGKRRSDEKEKVVMVASGPGGKKKIAMVEAPQPVNDFLRRRALRERRLLAESAGIGGREGKGSRSMKGG------------AGFGKGKRPPDGIRFTAWYRDLVDALNRRDLLPAIVFIFSRAGCDRAAAEVGGIASKLGLLSHAEKKQIKDRLSAFRLANPQVPLEK----EKVRLLLCGLATHHAGLLPVYKALVEELFNENLIRVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGRAGRRGKDTMGHVVLMRSRSEDALDAFNLLCAPVDSIRSHFRSSYAMVVNILRTRDLESCKLLVERSFGNYL---KAYSLGEEQEVDIANRDELKGRLGGVDAGELRMYEDMQEKLMKATRAERNLKREAAKLEEKYVKAVLGAVRLGAGLLLRDGRTLALI---------GEATLPHPLTNTQ 549
MTTEV RNMLYT AG LD + VV DE HY+ D +RG VWEE +I P H+ V+LSAT++N + A W+ TV G TR ++S RPVPL + + + ++ LF D +G PG P R+ G G G G G R + + VN L R A E R + E G+G RS + G G RP D++ L+R LLPAI+F+FSR GCD A A I + L L S E+++I++ + A PQ L + + L G+A HHAG+LP +K +VEELF L+R VFATETLA G+NMPAR V+ L+K G+ ++ P + Q+ GRAGRRG D GH V++ D L L ++S FR SY M VN++ E + ++E SF + + + +EL L D G + Y+ ++ ++ + E +L R + V A L +R G + + GR L+ G A P P+ T+
Sbjct: 108 MTTEVLRNMLYTEAAGSARLDSLGYVVMDEVHYLADRQRGAVWEEVIIHLPQHVRLVSLSATVSNAEEFAEWLVTVRGHTRVIVSEHRPVPLFQHVLADRTLHDLFVDQPSGLDPGVP----AFSRRGPGPNGRGAAPGSVGGATPGSRPGARAAEARAGD-----IAGAGAAAGGRAVNPDLLRLAREESRAVYE-------RGRGPRSSRPGRPGAGNGAGNGRRRSGPPNRP-----------DVIVRLDRAGLLPAILFVFSRVGCDAAVASC--IQAGLRLTSPDEQREIREHVRARTAGVPQADLAVLGYWQWLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVRAVFATETLALGINMPARTVVLERLTKFNGQTRADITPGEYTQLTGRAGRRGIDVEGHAVVLWQPGLDPLALAGLASTRTYPLKSSFRPSYNMAVNLVGRLGAERARTVLESSFAQFQADKAVVGIARAVRRNQTAIEELTAAL-ECDRGSVTEYDGLRRQIRE---READLSRAGTVRRQSEVAAALAKLRSGDVVRVPVGRRGGLVVVLDAGVDGGSAEGPRPVVLTE 655
BLAST of EWM22283.1 vs. NCBI_GenBank
Match: gi|522061025|ref|WP_020572234.1| (RNA helicase [Frankia discariae]) HSP 1 Score: 249.98 bits (637), Expect = 3.199e-67 Identity = 192/551 (34.85%), Postives = 271/551 (49.18%), Query Frame = 0
Query: 1 MTTEVYRNMLYTGDAGE--LDQVFAVVFDEFHYMNDPERGTVWEESVILSPPHILFVALSATIANVGQVAGWISTVHGPTRTVLSHFRPVPLKYYFIDNEGIYRLFDDDDAG--PGAP----KGLTTLVRQSAVGMGAGGGRGGGAGGGAGKRRSDEKEKVVMVASGPGGKKKIAMVEAPQPVNDFLRRRALRERRLLAESAGIGGREGKGSRSMKGGAGFGKGKRPPDGIRFTAWYRDLVDALNRRDLLPAIVFIFSRAGCDRAAAEVGGIASKLGLLSHAEKKQIKDRLSAFRLANPQVPLEK----EKVRLLLCGLATHHAGLLPVYKALVEELFNENLIRVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGRAGRRGKDTMGHVVLMRSRSEDALDAFNLLCAPVDSIRSHFRSSYAMVVNILRTRDLESCKLLVERSFGNYLK---AYSLGEEQEVDIANRDELKGRLGGVDAGELRMYEDMQEKLMKATRAERNLKREAAKLEEKYVKAVLGAVRLGAGLLLRDGRTLALI 536
MTTEV RNMLYT AG LD + VV DE HY+ D +RG VWEE +I P H+ V+LSAT++N + A W+ TV G TR ++S RPVPL + + + ++ LF D +G PG P +G R +A G G GG G + R+ E A G +A A P D LR RE G G R + RS G + PP+ D++ L+R LLPAI+F+FSR GCD AA I + L L S ++++I++ + A PQ L + + L G+A HHAG+LP +K +VEELF L+R VFATETLA G+NMPAR V+ L+K G+ ++ P + Q+ GRAGRRG D GH V++ D L L ++S FR SY M VN++ E + ++E SF + + + A +EL L D G + Y++++ + E +L R + V A L +R G + + GR L+
Sbjct: 108 MTTEVLRNMLYTEAAGSARLDSLGYVVMDEVHYLADRQRGAVWEEVIIHLPQHVRLVSLSATVSNAEEFAEWLVTVRGHTRVIVSEHRPVPLFQHVLADRTLHDLFVDQPSGLDPGVPAFSRRGPGPNGRGTAPGSVGGATSGGRPGARGAEARAGEIRAGDARAGDLAGAGAVAGGRAVNP--DLLR--VAREESRAVYERGRGPRSSRPGRSGGGNGEGRRRSGPPN-------RPDVIVRLDRAGLLPAILFVFSRVGCD--AAVTSCIQAGLRLTSPEQQREIREHVRARTAGVPQADLAVLGYWQWLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVRAVFATETLALGINMPARTVVLERLTKFNGQTRADITPGEYTQLTGRAGRRGIDVEGHAVVLWQPGLDPLALAGLASTRTYPLKSSFRPSYNMAVNLVGRLGAERARTVLESSFAQFQADKGVVGIARAVRRNQAAIEELTAAL-ECDRGSVIEYDELRRGIRD---READLSRAGTARRQSEVAAALAKLRSGDVVRVPAGRRGGLV 641
BLAST of EWM22283.1 vs. NCBI_GenBank
Match: gi|1094071366|ref|WP_071063859.1| (RNA helicase [Frankia sp. NRRL B-16219] >gi|1092316379|gb|OHV28210.1| RNA helicase [Frankia sp. NRRL B-16219]) HSP 1 Score: 248.054 bits (632), Expect = 1.122e-66 Identity = 172/470 (36.60%), Postives = 235/470 (50.00%), Query Frame = 0
Query: 1 MTTEVYRNMLYTGDAGE--LDQVFAVVFDEFHYMNDPERGTVWEESVILSPPHILFVALSATIANVGQVAGWISTVHGPTRTVLSHFRPVPLKYYFIDNEGIYRLFDDDDAG--PGAPKGLTTLVRQSA--VGMGAGGGRGGGAGGGAGKRRSDEKEKVVMVASGPGGKKKIAMVEAPQPVNDFLRRRALRERRLLAESAGIGGREGKGSRSMKGG------------AGFGKGKRPPDGIRFTAWYRDLVDALNRRDLLPAIVFIFSRAGCDRAAAEVGGIASKLGLLSHAEKKQIKDRLSAFRLANPQVPLEK----EKVRLLLCGLATHHAGLLPVYKALVEELFNENLIRVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGRAGRRGKDTMGHVVLMRSRSEDALDAFNLLCAPVDSIRSHFRSSYAMVVNILRTRDLESCKLLVERSFGNY 448
MTTEV RNMLYT AG LD + VV DE HY+ D +RG VWEE +I P H+ V+LSAT++N + A W+ TV G TR ++S RPVPL + + + ++ LF D +G PG P R+ G GA G GGA G+ + + + VN L R A E R + E G+G RS + G G RP D++ L+R LLPAI+F+FSR GCD AA I + L L S E+++I++ + A PQ L + + L G+A HHAG+LP +K +VEELF L+R VFATETLA G+NMPAR V+ L+K G+ ++ P + Q+ GRAGRRG D GH V++ D L L ++S FR SY M VN++ E + ++E SF +
Sbjct: 108 MTTEVLRNMLYTEAAGSARLDSLGYVVMDEVHYLADRQRGAVWEEVIIHLPQHVRLVSLSATVSNAEEFAEWLVTVRGHTRVIVSEHRPVPLFQHLLADRTLHDLFVDQPSGLDPGVP----AFSRRGPGPNGRGAAPGSVGGATPGSRPAARAAEARAAD-------IAGAGAAAGGRAVNPDLLRLAREESRAVYE-------RGRGPRSSRPGRPGAGNGAGNGRRRSGPPNRP-----------DVIVRLDRAGLLPAILFVFSRVGCD--AAVTSCIQAGLRLTSPDEQREIREHVRARTAGVPQADLAVLGYWQWLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVRAVFATETLALGINMPARTVVLERLTKFNGQTRADITPGEYTQLTGRAGRRGIDVEGHAVVLWQPGLDPLALAGLASTRTYPLKSSFRPSYNMAVNLVGRLGAERARTVLESSFAQF 546
BLAST of EWM22283.1 vs. NCBI_GenBank
Match: gi|1053785864|ref|WP_066061830.1| (RNA helicase [Frankia sp. EI5c] >gi|1025640703|gb|OAA28498.1| ATP-dependent RNA helicase HelY [Frankia sp. EI5c]) HSP 1 Score: 243.047 bits (619), Expect = 4.606e-65 Identity = 184/548 (33.58%), Postives = 265/548 (48.36%), Query Frame = 0
Query: 1 MTTEVYRNMLYTGDAG--ELDQVFAVVFDEFHYMNDPERGTVWEESVILSPPHILFVALSATIANVGQVAGWISTVHGPTRTVLSHFRPVPLKYYFIDNEGIYRLFDDDDAGP--GAPKGLTTLVRQSAVGMGAGGGRGGGAGGGAGKRRSDEKEKVVMVASGPGGKKKIAMVEAPQPVN-DFLRRRALRERRLLAESAGIGGREGKGSRSMKGGAGFGKGKRPPDGIRFTAWYRDLVDALNRRDLLPAIVFIFSRAGCDRAAAEVGGIASKLGLLSHAEKKQIKDRLSAFRLANPQVPLEK----EKVRLLLCGLATHHAGLLPVYKALVEELFNENLIRVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGRAGRRGKDTMGHVVLMRSRSEDALDAFNLLCAPVDSIRSHFRSSYAMVVNILRTRDLESCKLLVERSFGNYL---KAYSLGEEQEVDIANRDELKGRLGGVDAGELRMYEDMQEKLMKATRAERNLKREAAKLEEKYVKAVLGAVRLGAGLLLRDGRTLALI 536
MTTEV RNMLY+ AG L + VV DE HY+ D +RG VWEE +I P H+ V+LSAT++N + A W+ TV TR ++S RPVPL + + + ++ LF + AGP AP +S G GA G G+ G+ GG+ + VN D LR L E + G G+GSR + G + D++ L+R LLPAI+F+FSR GCD AA I++ L L + E+++I + A PQ LE + + L G+A HHAG+LP +K +VEELF L+R VFATETLA G+NMPAR V+ L+K G+ ++ P + Q+ GRAGRRG D GH V++ D L L ++S FR SY M VN++ E + ++E SF + + + A +EL L D G + Y+ ++ ++ + E +L R + V A L +R G + + GR L+
Sbjct: 108 MTTEVLRNMLYSEAAGGSRLGALGYVVMDEVHYLADRQRGAVWEEVIIHLPQHVRLVSLSATVSNAEEFAEWLVTVRXHTRVIVSEHRPVPLYQHVLADRALHDLFVEPSAGPVRSAPA-----TGRSRPGSGAAAGVTAGSPSAGGQ--------------AVGGQAVGGQAAGGRSVNPDLLR--------LAREESQSGFERGRGSRPPRSGRAGPGPGGRRRFGPPS--RPDVIVRLDRAGLLPAILFVFSRVGCD--AAVTSCISAGLRLTTSDERREINAHVRARTAGIPQADLEVLGYWQWLDGLERGIAAHHAGMLPTFKEVVEELFVRGLVRAVFATETLALGINMPARTVVLERLTKFNGQTRADITPGEYTQLTGRAGRRGIDVEGHAVVLWQSGLDPLALAGLASTRTYPLKSSFRPSYNMAVNLVGRLGAEHARTVLESSFAQFQADKAVVGIARAVRRNQAAIEELGAAL-ECDRGSVAEYDGLRREIRE---RETSLSRAGTARRQSEVAAALAKLRSGDVVRVPAGRRGGLV 620
BLAST of EWM22283.1 vs. NCBI_GenBank
Match: gi|1101219963|gb|OIP68551.1| (DEAD/DEAH box helicase [Oscillatoriales cyanobacterium CG2_30_44_21]) HSP 1 Score: 241.506 bits (615), Expect = 7.017e-65 Identity = 162/504 (32.14%), Postives = 272/504 (53.97%), Query Frame = 0
Query: 232 LVDALNRRDLLPAIVFIFSRAGCDRAAAEVGGIASKLGLLSHAEKKQIKDRLSAFRLANPQVPLEKEKVRLLLCGLATHHAGLLPVYKALVEELFNENLIRVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGRAGRRGKDTMGHVVLMRSRSEDALDAFNLLCAPVDSIRSHFRSSYAMVVNILRTRDLESCKLLVERSFGNYLKAYSLG---EEQEVDIANRDELKGRLGGVDAGELRMYEDMQEKLMKATRAERNLKREAAKLEEKYVKAVLGAVRLGAGLLLRDGRTLALIGEATLPHPLTNT-QLNLYVGLSQNGKLVAVSIGDIRSVEAEKDGLDVETAFQISLLLEGTAQ--GGLLWRPAGGSGGGAGGGSGTLTFVAEPVDPHSQEAQDLAAYLLEQGQRVPSLPLPMPSPDLVRQQALVASLQEQIGLSPLSGLGEAASASLLAVRNELERVERRIKKREKTLRGVRQKEWEDFLAAVDLLE 729
++ L +RD+LPAI FIFSR GCD++ ++G + L++ E ++K ++ F ANP++ + + L G+A HHAG+LP +K VEELF + LI+VVFATETLAAG+NMPAR TVIS++SK+ + L S+ LQMAGRAGRRG D +G+VV +++ E A +A +L + D + S F SY MV+N+L+T L+ + LVERSFG YL +L + E+ + +LK L VD +L Y+ ++++L + R + L ++A ++ + + + G+ L LR R LI L + + Q +V L ++ + + DI V ++ LLL+G + G L RP G + +A+ + P LP P+ +P++++QQA V +++ ++ P+ + + ++ N LE+++R+I ++K + RQ+ W++F++ V +L+
Sbjct: 244 VISHLRQRDMLPAIYFIFSRRGCDKSVTDLGNFS----LVNAEEAARLKPQIDTFVAANPEIG-KPAHIDALYRGIAAHHAGILPAWKGFVEELFQQGLIKVVFATETLAAGINMPARTTVISSISKRTDRGHRLLNASEFLQMAGRAGRRGMDDVGYVVTVQTPFEGAKEAAHLATSTADPLVSQFAPSYGMVMNLLQTHSLDQARDLVERSFGQYLADLNLAPQIQNLELIMEQIAKLKQDLASVDLRQLETYDKLRDRLREERRLLKMLAQQAEEVRLNDLASYAPYLLSGSPLTLRTNR--GLIVHGVLAAKVQGSGQFPWFVCLGRDNRWYTIGYKDIVQVGSD-------------LLLDGDIEYPGKLPIRPGQSIDGDEASAA-----IAQKIQP---------------------LPEPVLAPEVLKQQARVIAIESEMAQHPVDKMSD--RGAVFKKVNRLEQLQRQIDFQQKVVNERRQRHWQEFMSLVSILQ 699 HSP 2 Score: 125.176 bits (313), Expect = 7.686e-26 Identity = 58/112 (51.79%), Postives = 73/112 (65.18%), Query Frame = 0
Query: 1 MTTEVYRNMLYTGDAGE----LDQVFAVVFDEFHYMNDPERGTVWEESVILSPPHILFVALSATIANVGQVAGWISTVHGPTRTVLSHFRPVPLKYYFIDNEGIYRLFDDDD 108
MTTE++RNMLY GE L V VV DE HYMND +RGTVWEES++ P + VALSAT+AN Q+ WI+ VHG + S FRPVPL++ F +N+G + L D D
Sbjct: 103 MTTEIFRNMLYGTPIGEVGTSLTGVEVVVLDECHYMNDRQRGTVWEESIVYCPAEVQLVALSATVANSQQLTDWINKVHGDAELIYSDFRPVPLQHSFCNNKGFFPLLDSSD 214 The following BLAST results are available for this feature:
BLAST of EWM22283.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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