EWM22283.1, cds8390 (CDS) Nannochloropsis gaditana

Overview
NameEWM22283.1
Unique Namecds8390
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:631650..631709 +
Alignment locationKK037248.1:631901..632038 +
Alignment locationKK037248.1:632242..632338 +
Alignment locationKK037248.1:632479..632620 +
Alignment locationKK037248.1:632813..632914 +
Alignment locationKK037248.1:633141..633284 +
Alignment locationKK037248.1:633515..633611 +
Alignment locationKK037248.1:633899..633994 +
Alignment locationKK037248.1:634322..634441 +
Alignment locationKK037248.1:634633..634717 +
Alignment locationKK037248.1:634945..635033 +
Alignment locationKK037248.1:635308..635451 +
Alignment locationKK037248.1:635568..635649 +
Alignment locationKK037248.1:635918..635997 +
Alignment locationKK037248.1:636116..636193 +
Alignment locationKK037248.1:636437..636568 +
Alignment locationKK037248.1:636720..637229 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22283.1
Productdsh domain protein
Orig transcript idgnl|cribi|Naga_100712g1.2377.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:631650..631709 +
KK037248.1supercontigKK037248.1:631901..632038 +
KK037248.1supercontigKK037248.1:632242..632338 +
KK037248.1supercontigKK037248.1:632479..632620 +
KK037248.1supercontigKK037248.1:632813..632914 +
KK037248.1supercontigKK037248.1:633141..633284 +
KK037248.1supercontigKK037248.1:633515..633611 +
KK037248.1supercontigKK037248.1:633899..633994 +
KK037248.1supercontigKK037248.1:634322..634441 +
KK037248.1supercontigKK037248.1:634633..634717 +
KK037248.1supercontigKK037248.1:634945..635033 +
KK037248.1supercontigKK037248.1:635308..635451 +
KK037248.1supercontigKK037248.1:635568..635649 +
KK037248.1supercontigKK037248.1:635918..635997 +
KK037248.1supercontigKK037248.1:636116..636193 +
KK037248.1supercontigKK037248.1:636437..636568 +
KK037248.1supercontigKK037248.1:636720..637229 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR027417P-loop_NTPase
IPR001650Helicase_C
Homology
BLAST of EWM22283.1 vs. NCBI_GenBank
Match: gi|585102756|gb|EWM22283.1| (dsh domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1471.45 bits (3808), Expect = 0.000e+0
Identity = 731/731 (100.00%), Postives = 731/731 (100.00%), Query Frame = 0
Query:    1 MTTEVYRNMLYTGDAGELDQVFAVVFDEFHYMNDPERGTVWEESVILSPPHILFVALSATIANVGQVAGWISTVHGPTRTVLSHFRPVPLKYYFIDNEGIYRLFDDDDAGPGAPKGLTTLVRQSAVGMGAGGGRGGGAGGGAGKRRSDEKEKVVMVASGPGGKKKIAMVEAPQPVNDFLRRRALRERRLLAESAGIGGREGKGSRSMKGGAGFGKGKRPPDGIRFTAWYRDLVDALNRRDLLPAIVFIFSRAGCDRAAAEVGGIASKLGLLSHAEKKQIKDRLSAFRLANPQVPLEKEKVRLLLCGLATHHAGLLPVYKALVEELFNENLIRVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGRAGRRGKDTMGHVVLMRSRSEDALDAFNLLCAPVDSIRSHFRSSYAMVVNILRTRDLESCKLLVERSFGNYLKAYSLGEEQEVDIANRDELKGRLGGVDAGELRMYEDMQEKLMKATRAERNLKREAAKLEEKYVKAVLGAVRLGAGLLLRDGRTLALIGEATLPHPLTNTQLNLYVGLSQNGKLVAVSIGDIRSVEAEKDGLDVETAFQISLLLEGTAQGGLLWRPAGGSGGGAGGGSGTLTFVAEPVDPHSQEAQDLAAYLLEQGQRVPSLPLPMPSPDLVRQQALVASLQEQIGLSPLSGLGEAASASLLAVRNELERVERRIKKREKTLRGVRQKEWEDFLAAVDLLEGR 731
            MTTEVYRNMLYTGDAGELDQVFAVVFDEFHYMNDPERGTVWEESVILSPPHILFVALSATIANVGQVAGWISTVHGPTRTVLSHFRPVPLKYYFIDNEGIYRLFDDDDAGPGAPKGLTTLVRQSAVGMGAGGGRGGGAGGGAGKRRSDEKEKVVMVASGPGGKKKIAMVEAPQPVNDFLRRRALRERRLLAESAGIGGREGKGSRSMKGGAGFGKGKRPPDGIRFTAWYRDLVDALNRRDLLPAIVFIFSRAGCDRAAAEVGGIASKLGLLSHAEKKQIKDRLSAFRLANPQVPLEKEKVRLLLCGLATHHAGLLPVYKALVEELFNENLIRVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGRAGRRGKDTMGHVVLMRSRSEDALDAFNLLCAPVDSIRSHFRSSYAMVVNILRTRDLESCKLLVERSFGNYLKAYSLGEEQEVDIANRDELKGRLGGVDAGELRMYEDMQEKLMKATRAERNLKREAAKLEEKYVKAVLGAVRLGAGLLLRDGRTLALIGEATLPHPLTNTQLNLYVGLSQNGKLVAVSIGDIRSVEAEKDGLDVETAFQISLLLEGTAQGGLLWRPAGGSGGGAGGGSGTLTFVAEPVDPHSQEAQDLAAYLLEQGQRVPSLPLPMPSPDLVRQQALVASLQEQIGLSPLSGLGEAASASLLAVRNELERVERRIKKREKTLRGVRQKEWEDFLAAVDLLEGR
Sbjct:    1 MTTEVYRNMLYTGDAGELDQVFAVVFDEFHYMNDPERGTVWEESVILSPPHILFVALSATIANVGQVAGWISTVHGPTRTVLSHFRPVPLKYYFIDNEGIYRLFDDDDAGPGAPKGLTTLVRQSAVGMGAGGGRGGGAGGGAGKRRSDEKEKVVMVASGPGGKKKIAMVEAPQPVNDFLRRRALRERRLLAESAGIGGREGKGSRSMKGGAGFGKGKRPPDGIRFTAWYRDLVDALNRRDLLPAIVFIFSRAGCDRAAAEVGGIASKLGLLSHAEKKQIKDRLSAFRLANPQVPLEKEKVRLLLCGLATHHAGLLPVYKALVEELFNENLIRVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGRAGRRGKDTMGHVVLMRSRSEDALDAFNLLCAPVDSIRSHFRSSYAMVVNILRTRDLESCKLLVERSFGNYLKAYSLGEEQEVDIANRDELKGRLGGVDAGELRMYEDMQEKLMKATRAERNLKREAAKLEEKYVKAVLGAVRLGAGLLLRDGRTLALIGEATLPHPLTNTQLNLYVGLSQNGKLVAVSIGDIRSVEAEKDGLDVETAFQISLLLEGTAQGGLLWRPAGGSGGGAGGGSGTLTFVAEPVDPHSQEAQDLAAYLLEQGQRVPSLPLPMPSPDLVRQQALVASLQEQIGLSPLSGLGEAASASLLAVRNELERVERRIKKREKTLRGVRQKEWEDFLAAVDLLEGR 731          
BLAST of EWM22283.1 vs. NCBI_GenBank
Match: gi|553190155|ref|XP_005855138.1| (type iii restriction res subunit [Nannochloropsis gaditana CCMP526] >gi|422293920|gb|EKU21220.1| type iii restriction res subunit [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 716.457 bits (1848), Expect = 0.000e+0
Identity = 355/356 (99.72%), Postives = 356/356 (100.00%), Query Frame = 0
Query:  207 MKGGAGFGKGKRPPDGIRFTAWYRDLVDALNRRDLLPAIVFIFSRAGCDRAAAEVGGIASKLGLLSHAEKKQIKDRLSAFRLANPQVPLEKEKVRLLLCGLATHHAGLLPVYKALVEELFNENLIRVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGRAGRRGKDTMGHVVLMRSRSEDALDAFNLLCAPVDSIRSHFRSSYAMVVNILRTRDLESCKLLVERSFGNYLKAYSLGEEQEVDIANRDELKGRLGGVDAGELRMYEDMQEKLMKATRAERNLKREAAKLEEKYVKAVLGAVRLGAGLLLRDGRTLALIGEATLPHPLTNTQLNLYVGLSQNGKL 562
            MKGGAGFGKGKRPPDGIRFTAWYRDLVDALNRRDLLPAIVFIFSRAGCDRAAAEVGGIASKLGLLSHAEKKQIKDRLSAFRLANPQVPLEKEKVRLLLCGLATHHAGLLPVYKALVEELFNENLIRVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGRAGRRGKDTMGHVVLMRSRSEDALDAFNLLCAPVDSIRSHFRSSYAMVVNILRTRDLESCKLLVERSFGNYLKAYSLGEEQEVDIANRDELKGRLGGVDAGELRMYED+QEKLMKATRAERNLKREAAKLEEKYVKAVLGAVRLGAGLLLRDGRTLALIGEATLPHPLTNTQLNLYVGLSQNGKL
Sbjct:    1 MKGGAGFGKGKRPPDGIRFTAWYRDLVDALNRRDLLPAIVFIFSRAGCDRAAAEVGGIASKLGLLSHAEKKQIKDRLSAFRLANPQVPLEKEKVRLLLCGLATHHAGLLPVYKALVEELFNENLIRVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGRAGRRGKDTMGHVVLMRSRSEDALDAFNLLCAPVDSIRSHFRSSYAMVVNILRTRDLESCKLLVERSFGNYLKAYSLGEEQEVDIANRDELKGRLGGVDAGELRMYEDLQEKLMKATRAERNLKREAAKLEEKYVKAVLGAVRLGAGLLLRDGRTLALIGEATLPHPLTNTQLNLYVGLSQNGKL 356          
BLAST of EWM22283.1 vs. NCBI_GenBank
Match: gi|873237812|emb|CEL97007.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 354.369 bits (908), Expect = 7.680e-104
Identity = 227/576 (39.41%), Postives = 319/576 (55.38%), Query Frame = 0
Query:    1 MTTEVYRNMLYTGDAGELDQ-----------VFAVVFDEFHYMNDPERGTVWEESVILSPPHILFVALSATIANVGQVAGWISTVHGPTRTVLSHFRPVPLKYYFIDNEGIYRLFDDDDAGPGAPKGLTTLVRQSAVGMGAGG--GRGGGAGGGAGKRRSDEKEKVVMVASGPG----GKKKI-AMVEAPQP-VNDFLRRRA----------LRERRLLA-ESAGIGGREGKGSRSMKGGAGFGKGKRPPDGIRFTAWYRDLVDALNRRDLLPAIVFIFSRAGCDRAAAEVGGIASKLGLLSHAEKKQIKDRLSAFRLANPQVPLEKEKVRLLLCGLATHHAGLLPVYKALVEELFNENLIRVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGRAGRRGKDTMGHVVLMRSRSEDALDAFNLLCAPVDSIRSHFRSSYAMVVNILRTRDLESCKLLVERSFGNYLKAYSLGEEQEVDIANRDELKGRLG---------GVDAGELRMYEDMQEKLMKATRAERNLKREAAKLEEKYVKAVLGAVRLGAGLLLRDGRTLALIG 537
            MTTEV+RN+LY G+A   D+             +V+FDEFHY+NDP RGTVWEE VI  P HI  V LSAT+AN   +  W++ VHGPT  V+S  RPVPL+Y F  N+G+Y LF D +AGPGA  G+  L  +              GG     GK  + +K +  ++   P      K  I ++V+  +P +   LRR++           + ++L++ +   +   EG+  RS++        K+  D    T     LV  + ++ LLPAI+F+FSR+GCD +A  +   A  + LLS AEK+ ++ +L  F   NP++ +E  ++ LL  G+ +HHAGLLP+YK L+EELFN NLI+V+FATETLAAGVNMPAR T I+ L K   +    L  SQLLQMAGRAGRRGKD  G VVL+RS   DA +A   L AP+DSI+S FR +Y +  N+LR RDL   + L+E+SFG +L+A     E  ++I +    K R+          GVD  EL +Y    ++L         ++  A       V  +L   R G  + L +G   A +G
Sbjct:  142 MTTEVFRNILY-GEAIREDEYSYVPSKLTGETVSVIFDEFHYINDPSRGTVWEECVINCPKHINIVGLSATMANPMDLKDWLAGVHGPTDLVVSEHRPVPLRYMFATNKGLYPLFRDAEAGPGARNGVPLLEGEEEDMAAEEDILELAGGLRASEGKIITPKKPRAPLIPLNPVFEDLRKDTIRSLVKRHRPGIEARLRRQSNNGGRGGRRARQLKKLMSYDDDDVDQFEGRKERSLQS---LVSAKQIADA--ETPTLSKLVSQMRKKQLLPAIIFMFSRSGCDSSARRLA--ADSMELLSEAEKQAVQAKLREFAQENPELLIEPWRIGLLRKGIGSHHAGLLPLYKILLEELFNANLIKVLFATETLAAGVNMPARTTAITVLRKYGSEGLTRLSTSQLLQMAGRAGRRGKDHEGSVVLIRSDRTDAREAAMTLLAPLDSIKSQFRITYGLATNVLRVRDLSKSRELIEKSFGVFLQARRREAEGRMEILDPAVAKERINDTRQRLREMGVDMNELDIYRRAFQRLQAEKDWLSTVRTSAEADRAAAVSKMLPTFRKGGAVELINGEVGAFVG 709          
BLAST of EWM22283.1 vs. NCBI_GenBank
Match: gi|546320535|ref|XP_005717307.1| (unnamed protein product [Chondrus crispus] >gi|515797393|emb|CDF77523.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 254.218 bits (648), Expect = 3.229e-68
Identity = 154/384 (40.10%), Postives = 224/384 (58.33%), Query Frame = 0
Query:  179 LRRRALRERRLLAESAGIGGREGKGSRSMKGGAGFGKGKRPPDGIRFTAWYRD----------LVDALNRRDLLPAIVFIFSRAGCDRAAAEVGGIASKLGLLSHAEKKQIKDRLSAFRLANPQVPLEKEKVRLLLCGLATHHAGLLPVYKALVEELFNENLIRVVFATETLAAGVNMPARATVISTLSKKIGKV-TINLQPSQLLQMAGRAGRRGKDTMGHVVLMRSRSEDALDAFNLLCAPVDSIRSHFRSSYAMVVNILRTRDLESCKLLVERSFGNYLKAYSLGEEQEVDIANR--------------------DELKGRLGGVDAGELRMYEDMQEKLMKATRAERNLKREAAKLEEKYVKAVLGAVRLGAGLLLRDGR 531
            L  + LR  + L +     GR  +     + G    KGK      R     RD          +V  L+R D+LP I+FIFSRAGCDRAA  V   + +  L+S  E+++I++RL AF   +P + ++ +++ L L G+A+HHAGLLP++K  VEELF + LI+VVFATETLAAG+NMPAR TVIS+LSK+ G    ++L  S++LQMAGRAGRRGKD +GH V++RSR+E AL+AF +L A VD+++S F  +Y MV+N+L  R LE  K LV+RSFGN+L+   L E       NR                    +E +  +  VD  +LR Y    E++    RA   L +++ +++++ ++  L     G  LLLR+ +
Sbjct:  353 LHPKLLRRVKDLKDVRDRNGRAQRNRGDSRDGIEVMKGKYHEIATRSKKRSRDRYAEIPSFPYVVRNLSRNDMLPCIIFIFSRAGCDRAA--VAASSERTELVSVKERERIRERLDAFVAEHPGL-VQADRLNLALQGIASHHAGLLPLWKLCVEELFQDGLIKVVFATETLAAGINMPARTTVISSLSKRAGDAGIVSLTTSEVLQMAGRAGRRGKDVLGHSVVLRSRNEGALEAFKVLTADVDALQSKFTPNYGMVLNLLSARPLEDAKKLVDRSFGNFLREKQLNEVAYQSTGNRSLPGNIEAIVREKLALESVLEEARTIVSSVDEKQLRTYVKSLERVKAEKRALSFLVQQSIEMDDELIEETLTFAPTGTKLLLREKK 733          

HSP 2 Score: 137.117 bits (344), Expect = 1.500e-29
Identity = 66/114 (57.89%), Postives = 79/114 (69.30%), Query Frame = 0
Query:    1 MTTEVYRNMLYTGDAGEL-------DQVFAVVFDEFHYMNDPERGTVWEESVILSPPHILFVALSATIANVGQVAGWISTVHGPTRTVLSHFRPVPLKYYFIDNEGIYRLFDDD 107
            MTTEVYRNMLY  D+ E+       D +FAVVFDEFHY+ND +RGTVWEESVI SP H+L VALSAT++N   V  W S V G T  + S  RPVPLK+ + D +G+  LF DD
Sbjct:  214 MTTEVYRNMLY-ADSTEVVSYRSVTDDLFAVVFDEFHYLNDRDRGTVWEESVINSPSHVLLVALSATMSNTADVKDWFSNVQGGTALIESSVRPVPLKFGYCDQQGMTPLFADD 326          
BLAST of EWM22283.1 vs. NCBI_GenBank
Match: gi|1214780947|ref|WP_088892101.1| (DEAD/DEAH box helicase [Leptolyngbya ohadii])

HSP 1 Score: 248.054 bits (632), Expect = 3.021e-67
Identity = 181/529 (34.22%), Postives = 275/529 (51.98%), Query Frame = 0
Query:  207 MKGGAGFGKGKRPPDGIRFTAWYRDLVDALNRRDLLPAIVFIFSRAGCDRAAAEVGGIASKLGLLSHAEKKQIKDRLSAFRLANPQVPLEKEKVRLLLCGLATHHAGLLPVYKALVEELFNENLIRVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGRAGRRGKDTMGHVVLMRSRSEDALDAFNLLCAPVDSIRSHFRSSYAMVVNILRTRDLESCKLLVERSFGNYLKAYSLGEEQEVD---IANRDELKGRLGGVDAGELRMYEDMQEKLMKATRAERNLKREAAKLEEKYVKAVLGAVRLGAGLLLRDGRTLALIGEATLPHPLTNT-QLNLYVGLSQNGKLVAVSIGDIRSVEAEKDGLDVETAFQISLLLEGTAQGGLLWRPAGGS---GGGAGGGSGTLTFVAEPVDPHSQEAQDLAAYLLEQGQRVPSLPLPMPSPDLVRQQALVASLQEQIGLSPLSGLGEAASASLLAVRNELERVERRIKKREKTLRGVRQKEWEDFLAAVDLL 728
            +K   G  KG++   GI F      L+  L +RD+LPAI FIFSR GCDRA   +    S L L++  E   +K+++ AF   +P+       +  L  G+A+HHAG+LP +K L+EELF + LI+VVFATETLAAG+NMPAR TVIS+LSK+       L  S+ LQMAGRAGRRG D  GHVV ++S  E A +A  L  +  D + S F  SY MV+N+L+T  +E  + LVERSFG+YL    L  +Q+     +A  +  K ++  ++A  +  YE + E+L +  R  + L+ +A +++   V A+  A  +   LL    + +A+   ATL   L  + Q    V L Q+ +   V++ D+  + AE   L               AQ   L  P   S   G    G   TL  V   + P     QD+A                   P++ +QQA V +++EQI   PL  LG+    +L+  +  +  +E +++ R+   +   Q+ W++FL+ +++L
Sbjct:  224 LKPKGGKPKGRQEAPGIEF------LLSQLQQRDMLPAIYFIFSRRGCDRAVENL----SHLTLVNPREAASLKEQIDAFLERSPEAA-RTGHIEPLYRGIASHHAGVLPAWKGLIEELFQQGLIKVVFATETLAAGINMPARTTVISSLSKRTDHGHRLLNASEFLQMAGRAGRRGMDLQGHVVTVQSPYEGASEAAYLATSKADPLVSQFSPSYGMVLNLLQTHSIEEAQDLVERSFGHYLSTLHLKPQQQAINDLVAEIEHQKAQIKDINADLVANYEKLSERLREERRLLKTLQHQAMEMQADQV-AMAVAFAVSGTLLTIKTKQMAVPLSATLVMKLPGSGQFPYLVCLGQDNRWYVVAVADVVGLHAEYPRL---------------AQVDRLAPPEDLSPKVGSVKKGDESTLAIVR--LMPSINAEQDIA-------------------PEVQQQQARVKAIEEQIQTHPLRQLGD--PGNLIKRQKRIWDLEEKLRDRQGKFQQYSQRYWQEFLSLMEVL 702          

HSP 2 Score: 137.502 bits (345), Expect = 8.999e-30
Identity = 68/135 (50.37%), Postives = 89/135 (65.93%), Query Frame = 0
Query:    1 MTTEVYRNMLYTGDAGELD----QVFAVVFDEFHYMNDPERGTVWEESVILSPPHILFVALSATIANVGQVAGWISTVHGPTRTVLSHFRPVPLKYYFIDNEGIYRLFDDDDAGPGA---PKGLTTLVRQSAVGM 128
            MTTE++RNMLY    G++      V AVV DE HYMND +RGTVWEES+I +PP I  VALSATIAN  Q+  WI  VHGPT+ + S FRPVPL+++F + +G++ L +D++        PKG     RQ A G+
Sbjct:  106 MTTEIFRNMLYGTPIGQVGTSVIDVEAVVLDECHYMNDRQRGTVWEESIIYAPPGIQLVALSATIANSDQLTDWIDKVHGPTKLIYSDFRPVPLQFHFCNPKGLFPLLNDNNKAINPRLKPKGGKPKGRQEAPGI 240          
BLAST of EWM22283.1 vs. NCBI_GenBank
Match: gi|521298084|ref|WP_020462352.1| (RNA helicase [Frankia sp. EAN1pec] >gi|158112035|gb|ABW14232.1| DEAD/DEAH box helicase domain protein [Frankia sp. EAN1pec])

HSP 1 Score: 249.595 bits (636), Expect = 3.061e-67
Identity = 192/581 (33.05%), Postives = 271/581 (46.64%), Query Frame = 0
Query:    1 MTTEVYRNMLYTGDAGE--LDQVFAVVFDEFHYMNDPERGTVWEESVILSPPHILFVALSATIANVGQVAGWISTVHGPTRTVLSHFRPVPLKYYFIDNEGIYRLFDDDDAG--PGAPKGLTTLVRQSAVGMGAGGGRGGGAGGGAGKRRSDEKEKVVMVASGPGGKKKIAMVEAPQPVNDFLRRRALRERRLLAESAGIGGREGKGSRSMKGG------------AGFGKGKRPPDGIRFTAWYRDLVDALNRRDLLPAIVFIFSRAGCDRAAAEVGGIASKLGLLSHAEKKQIKDRLSAFRLANPQVPLEK----EKVRLLLCGLATHHAGLLPVYKALVEELFNENLIRVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGRAGRRGKDTMGHVVLMRSRSEDALDAFNLLCAPVDSIRSHFRSSYAMVVNILRTRDLESCKLLVERSFGNYL---KAYSLGEEQEVDIANRDELKGRLGGVDAGELRMYEDMQEKLMKATRAERNLKREAAKLEEKYVKAVLGAVRLGAGLLLRDGRTLALI---------GEATLPHPLTNTQ 549
            MTTEV RNMLYT  AG   LD +  VV DE HY+ D +RG VWEE +I  P H+  V+LSAT++N  + A W+ TV G TR ++S  RPVPL  + + +  ++ LF D  +G  PG P       R+     G G   G   G   G R      +                    + VN  L R A  E R + E        G+G RS + G               G   RP           D++  L+R  LLPAI+F+FSR GCD A A    I + L L S  E+++I++ + A     PQ  L      + +  L  G+A HHAG+LP +K +VEELF   L+R VFATETLA G+NMPAR  V+  L+K  G+   ++ P +  Q+ GRAGRRG D  GH V++     D L    L       ++S FR SY M VN++     E  + ++E SF  +        +      +    +EL   L   D G +  Y+ ++ ++ +    E +L R      +  V A L  +R G  + +  GR   L+         G A  P P+  T+
Sbjct:  108 MTTEVLRNMLYTEAAGSARLDSLGYVVMDEVHYLADRQRGAVWEEVIIHLPQHVRLVSLSATVSNAEEFAEWLVTVRGHTRVIVSEHRPVPLFQHVLADRTLHDLFVDQPSGLDPGVP----AFSRRGPGPNGRGAAPGSVGGATPGSRPGARAAEARAGD-----IAGAGAAAGGRAVNPDLLRLAREESRAVYE-------RGRGPRSSRPGRPGAGNGAGNGRRRSGPPNRP-----------DVIVRLDRAGLLPAILFVFSRVGCDAAVASC--IQAGLRLTSPDEQREIREHVRARTAGVPQADLAVLGYWQWLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVRAVFATETLALGINMPARTVVLERLTKFNGQTRADITPGEYTQLTGRAGRRGIDVEGHAVVLWQPGLDPLALAGLASTRTYPLKSSFRPSYNMAVNLVGRLGAERARTVLESSFAQFQADKAVVGIARAVRRNQTAIEELTAAL-ECDRGSVTEYDGLRRQIRE---READLSRAGTVRRQSEVAAALAKLRSGDVVRVPVGRRGGLVVVLDAGVDGGSAEGPRPVVLTE 655          
BLAST of EWM22283.1 vs. NCBI_GenBank
Match: gi|522061025|ref|WP_020572234.1| (RNA helicase [Frankia discariae])

HSP 1 Score: 249.98 bits (637), Expect = 3.199e-67
Identity = 192/551 (34.85%), Postives = 271/551 (49.18%), Query Frame = 0
Query:    1 MTTEVYRNMLYTGDAGE--LDQVFAVVFDEFHYMNDPERGTVWEESVILSPPHILFVALSATIANVGQVAGWISTVHGPTRTVLSHFRPVPLKYYFIDNEGIYRLFDDDDAG--PGAP----KGLTTLVRQSAVGMGAGGGRGGGAGGGAGKRRSDEKEKVVMVASGPGGKKKIAMVEAPQPVNDFLRRRALRERRLLAESAGIGGREGKGSRSMKGGAGFGKGKRPPDGIRFTAWYRDLVDALNRRDLLPAIVFIFSRAGCDRAAAEVGGIASKLGLLSHAEKKQIKDRLSAFRLANPQVPLEK----EKVRLLLCGLATHHAGLLPVYKALVEELFNENLIRVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGRAGRRGKDTMGHVVLMRSRSEDALDAFNLLCAPVDSIRSHFRSSYAMVVNILRTRDLESCKLLVERSFGNYLK---AYSLGEEQEVDIANRDELKGRLGGVDAGELRMYEDMQEKLMKATRAERNLKREAAKLEEKYVKAVLGAVRLGAGLLLRDGRTLALI 536
            MTTEV RNMLYT  AG   LD +  VV DE HY+ D +RG VWEE +I  P H+  V+LSAT++N  + A W+ TV G TR ++S  RPVPL  + + +  ++ LF D  +G  PG P    +G     R +A G   G   GG  G    + R+ E       A    G   +A   A  P  D LR    RE        G G R  +  RS  G     +   PP+         D++  L+R  LLPAI+F+FSR GCD  AA    I + L L S  ++++I++ + A     PQ  L      + +  L  G+A HHAG+LP +K +VEELF   L+R VFATETLA G+NMPAR  V+  L+K  G+   ++ P +  Q+ GRAGRRG D  GH V++     D L    L       ++S FR SY M VN++     E  + ++E SF  +        +      + A  +EL   L   D G +  Y++++  +      E +L R      +  V A L  +R G  + +  GR   L+
Sbjct:  108 MTTEVLRNMLYTEAAGSARLDSLGYVVMDEVHYLADRQRGAVWEEVIIHLPQHVRLVSLSATVSNAEEFAEWLVTVRGHTRVIVSEHRPVPLFQHVLADRTLHDLFVDQPSGLDPGVPAFSRRGPGPNGRGTAPGSVGGATSGGRPGARGAEARAGEIRAGDARAGDLAGAGAVAGGRAVNP--DLLR--VAREESRAVYERGRGPRSSRPGRSGGGNGEGRRRSGPPN-------RPDVIVRLDRAGLLPAILFVFSRVGCD--AAVTSCIQAGLRLTSPEQQREIREHVRARTAGVPQADLAVLGYWQWLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVRAVFATETLALGINMPARTVVLERLTKFNGQTRADITPGEYTQLTGRAGRRGIDVEGHAVVLWQPGLDPLALAGLASTRTYPLKSSFRPSYNMAVNLVGRLGAERARTVLESSFAQFQADKGVVGIARAVRRNQAAIEELTAAL-ECDRGSVIEYDELRRGIRD---READLSRAGTARRQSEVAAALAKLRSGDVVRVPAGRRGGLV 641          
BLAST of EWM22283.1 vs. NCBI_GenBank
Match: gi|1094071366|ref|WP_071063859.1| (RNA helicase [Frankia sp. NRRL B-16219] >gi|1092316379|gb|OHV28210.1| RNA helicase [Frankia sp. NRRL B-16219])

HSP 1 Score: 248.054 bits (632), Expect = 1.122e-66
Identity = 172/470 (36.60%), Postives = 235/470 (50.00%), Query Frame = 0
Query:    1 MTTEVYRNMLYTGDAGE--LDQVFAVVFDEFHYMNDPERGTVWEESVILSPPHILFVALSATIANVGQVAGWISTVHGPTRTVLSHFRPVPLKYYFIDNEGIYRLFDDDDAG--PGAPKGLTTLVRQSA--VGMGAGGGRGGGAGGGAGKRRSDEKEKVVMVASGPGGKKKIAMVEAPQPVNDFLRRRALRERRLLAESAGIGGREGKGSRSMKGG------------AGFGKGKRPPDGIRFTAWYRDLVDALNRRDLLPAIVFIFSRAGCDRAAAEVGGIASKLGLLSHAEKKQIKDRLSAFRLANPQVPLEK----EKVRLLLCGLATHHAGLLPVYKALVEELFNENLIRVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGRAGRRGKDTMGHVVLMRSRSEDALDAFNLLCAPVDSIRSHFRSSYAMVVNILRTRDLESCKLLVERSFGNY 448
            MTTEV RNMLYT  AG   LD +  VV DE HY+ D +RG VWEE +I  P H+  V+LSAT++N  + A W+ TV G TR ++S  RPVPL  + + +  ++ LF D  +G  PG P       R+     G GA  G  GGA  G+       + +                    + VN  L R A  E R + E        G+G RS + G               G   RP           D++  L+R  LLPAI+F+FSR GCD  AA    I + L L S  E+++I++ + A     PQ  L      + +  L  G+A HHAG+LP +K +VEELF   L+R VFATETLA G+NMPAR  V+  L+K  G+   ++ P +  Q+ GRAGRRG D  GH V++     D L    L       ++S FR SY M VN++     E  + ++E SF  +
Sbjct:  108 MTTEVLRNMLYTEAAGSARLDSLGYVVMDEVHYLADRQRGAVWEEVIIHLPQHVRLVSLSATVSNAEEFAEWLVTVRGHTRVIVSEHRPVPLFQHLLADRTLHDLFVDQPSGLDPGVP----AFSRRGPGPNGRGAAPGSVGGATPGSRPAARAAEARAAD-------IAGAGAAAGGRAVNPDLLRLAREESRAVYE-------RGRGPRSSRPGRPGAGNGAGNGRRRSGPPNRP-----------DVIVRLDRAGLLPAILFVFSRVGCD--AAVTSCIQAGLRLTSPDEQREIREHVRARTAGVPQADLAVLGYWQWLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVRAVFATETLALGINMPARTVVLERLTKFNGQTRADITPGEYTQLTGRAGRRGIDVEGHAVVLWQPGLDPLALAGLASTRTYPLKSSFRPSYNMAVNLVGRLGAERARTVLESSFAQF 546          
BLAST of EWM22283.1 vs. NCBI_GenBank
Match: gi|1053785864|ref|WP_066061830.1| (RNA helicase [Frankia sp. EI5c] >gi|1025640703|gb|OAA28498.1| ATP-dependent RNA helicase HelY [Frankia sp. EI5c])

HSP 1 Score: 243.047 bits (619), Expect = 4.606e-65
Identity = 184/548 (33.58%), Postives = 265/548 (48.36%), Query Frame = 0
Query:    1 MTTEVYRNMLYTGDAG--ELDQVFAVVFDEFHYMNDPERGTVWEESVILSPPHILFVALSATIANVGQVAGWISTVHGPTRTVLSHFRPVPLKYYFIDNEGIYRLFDDDDAGP--GAPKGLTTLVRQSAVGMGAGGGRGGGAGGGAGKRRSDEKEKVVMVASGPGGKKKIAMVEAPQPVN-DFLRRRALRERRLLAESAGIGGREGKGSRSMKGGAGFGKGKRPPDGIRFTAWYRDLVDALNRRDLLPAIVFIFSRAGCDRAAAEVGGIASKLGLLSHAEKKQIKDRLSAFRLANPQVPLEK----EKVRLLLCGLATHHAGLLPVYKALVEELFNENLIRVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGRAGRRGKDTMGHVVLMRSRSEDALDAFNLLCAPVDSIRSHFRSSYAMVVNILRTRDLESCKLLVERSFGNYL---KAYSLGEEQEVDIANRDELKGRLGGVDAGELRMYEDMQEKLMKATRAERNLKREAAKLEEKYVKAVLGAVRLGAGLLLRDGRTLALI 536
            MTTEV RNMLY+  AG   L  +  VV DE HY+ D +RG VWEE +I  P H+  V+LSAT++N  + A W+ TV   TR ++S  RPVPL  + + +  ++ LF +  AGP   AP        +S  G GA  G   G+    G+                GG+         + VN D LR        L  E +  G   G+GSR  + G               +    D++  L+R  LLPAI+F+FSR GCD  AA    I++ L L +  E+++I   + A     PQ  LE     + +  L  G+A HHAG+LP +K +VEELF   L+R VFATETLA G+NMPAR  V+  L+K  G+   ++ P +  Q+ GRAGRRG D  GH V++     D L    L       ++S FR SY M VN++     E  + ++E SF  +        +      + A  +EL   L   D G +  Y+ ++ ++ +    E +L R      +  V A L  +R G  + +  GR   L+
Sbjct:  108 MTTEVLRNMLYSEAAGGSRLGALGYVVMDEVHYLADRQRGAVWEEVIIHLPQHVRLVSLSATVSNAEEFAEWLVTVRXHTRVIVSEHRPVPLYQHVLADRALHDLFVEPSAGPVRSAPA-----TGRSRPGSGAAAGVTAGSPSAGGQ--------------AVGGQAVGGQAAGGRSVNPDLLR--------LAREESQSGFERGRGSRPPRSGRAGPGPGGRRRFGPPS--RPDVIVRLDRAGLLPAILFVFSRVGCD--AAVTSCISAGLRLTTSDERREINAHVRARTAGIPQADLEVLGYWQWLDGLERGIAAHHAGMLPTFKEVVEELFVRGLVRAVFATETLALGINMPARTVVLERLTKFNGQTRADITPGEYTQLTGRAGRRGIDVEGHAVVLWQSGLDPLALAGLASTRTYPLKSSFRPSYNMAVNLVGRLGAEHARTVLESSFAQFQADKAVVGIARAVRRNQAAIEELGAAL-ECDRGSVAEYDGLRREIRE---RETSLSRAGTARRQSEVAAALAKLRSGDVVRVPAGRRGGLV 620          
BLAST of EWM22283.1 vs. NCBI_GenBank
Match: gi|1101219963|gb|OIP68551.1| (DEAD/DEAH box helicase [Oscillatoriales cyanobacterium CG2_30_44_21])

HSP 1 Score: 241.506 bits (615), Expect = 7.017e-65
Identity = 162/504 (32.14%), Postives = 272/504 (53.97%), Query Frame = 0
Query:  232 LVDALNRRDLLPAIVFIFSRAGCDRAAAEVGGIASKLGLLSHAEKKQIKDRLSAFRLANPQVPLEKEKVRLLLCGLATHHAGLLPVYKALVEELFNENLIRVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGRAGRRGKDTMGHVVLMRSRSEDALDAFNLLCAPVDSIRSHFRSSYAMVVNILRTRDLESCKLLVERSFGNYLKAYSLG---EEQEVDIANRDELKGRLGGVDAGELRMYEDMQEKLMKATRAERNLKREAAKLEEKYVKAVLGAVRLGAGLLLRDGRTLALIGEATLPHPLTNT-QLNLYVGLSQNGKLVAVSIGDIRSVEAEKDGLDVETAFQISLLLEGTAQ--GGLLWRPAGGSGGGAGGGSGTLTFVAEPVDPHSQEAQDLAAYLLEQGQRVPSLPLPMPSPDLVRQQALVASLQEQIGLSPLSGLGEAASASLLAVRNELERVERRIKKREKTLRGVRQKEWEDFLAAVDLLE 729
            ++  L +RD+LPAI FIFSR GCD++  ++G  +    L++  E  ++K ++  F  ANP++  +   +  L  G+A HHAG+LP +K  VEELF + LI+VVFATETLAAG+NMPAR TVIS++SK+  +    L  S+ LQMAGRAGRRG D +G+VV +++  E A +A +L  +  D + S F  SY MV+N+L+T  L+  + LVERSFG YL   +L    +  E+ +    +LK  L  VD  +L  Y+ ++++L +  R  + L ++A ++    + +    +  G+ L LR  R   LI    L   +  + Q   +V L ++ +   +   DI  V ++             LLL+G  +  G L  RP     G     +     +A+ + P                     LP P+ +P++++QQA V +++ ++   P+  + +    ++    N LE+++R+I  ++K +   RQ+ W++F++ V +L+
Sbjct:  244 VISHLRQRDMLPAIYFIFSRRGCDKSVTDLGNFS----LVNAEEAARLKPQIDTFVAANPEIG-KPAHIDALYRGIAAHHAGILPAWKGFVEELFQQGLIKVVFATETLAAGINMPARTTVISSISKRTDRGHRLLNASEFLQMAGRAGRRGMDDVGYVVTVQTPFEGAKEAAHLATSTADPLVSQFAPSYGMVMNLLQTHSLDQARDLVERSFGQYLADLNLAPQIQNLELIMEQIAKLKQDLASVDLRQLETYDKLRDRLREERRLLKMLAQQAEEVRLNDLASYAPYLLSGSPLTLRTNR--GLIVHGVLAAKVQGSGQFPWFVCLGRDNRWYTIGYKDIVQVGSD-------------LLLDGDIEYPGKLPIRPGQSIDGDEASAA-----IAQKIQP---------------------LPEPVLAPEVLKQQARVIAIESEMAQHPVDKMSD--RGAVFKKVNRLEQLQRQIDFQQKVVNERRQRHWQEFMSLVSILQ 699          

HSP 2 Score: 125.176 bits (313), Expect = 7.686e-26
Identity = 58/112 (51.79%), Postives = 73/112 (65.18%), Query Frame = 0
Query:    1 MTTEVYRNMLYTGDAGE----LDQVFAVVFDEFHYMNDPERGTVWEESVILSPPHILFVALSATIANVGQVAGWISTVHGPTRTVLSHFRPVPLKYYFIDNEGIYRLFDDDD 108
            MTTE++RNMLY    GE    L  V  VV DE HYMND +RGTVWEES++  P  +  VALSAT+AN  Q+  WI+ VHG    + S FRPVPL++ F +N+G + L D  D
Sbjct:  103 MTTEIFRNMLYGTPIGEVGTSLTGVEVVVLDECHYMNDRQRGTVWEESIVYCPAEVQLVALSATVANSQQLTDWINKVHGDAELIYSDFRPVPLQHSFCNNKGFFPLLDSSD 214          
The following BLAST results are available for this feature:
BLAST of EWM22283.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102756|gb|EWM22283.1|0.000e+0100.00dsh domain protein [Nannochloropsis gaditana][more]
gi|553190155|ref|XP_005855138.1|0.000e+099.72type iii restriction res subunit [Nannochloropsis ... [more]
gi|873237812|emb|CEL97007.1|7.680e-10439.41unnamed protein product [Vitrella brassicaformis C... [more]
gi|546320535|ref|XP_005717307.1|3.229e-6840.10unnamed protein product [Chondrus crispus] >gi|515... [more]
gi|1214780947|ref|WP_088892101.1|3.021e-6734.22DEAD/DEAH box helicase [Leptolyngbya ohadii][more]
gi|521298084|ref|WP_020462352.1|3.061e-6733.05RNA helicase [Frankia sp. EAN1pec] >gi|158112035|g... [more]
gi|522061025|ref|WP_020572234.1|3.199e-6734.85RNA helicase [Frankia discariae][more]
gi|1094071366|ref|WP_071063859.1|1.122e-6636.60RNA helicase [Frankia sp. NRRL B-16219] >gi|109231... [more]
gi|1053785864|ref|WP_066061830.1|4.606e-6533.58RNA helicase [Frankia sp. EI5c] >gi|1025640703|gb|... [more]
gi|1101219963|gb|OIP68551.1|7.017e-6532.14DEAD/DEAH box helicase [Oscillatoriales cyanobacte... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8417rna8417Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications