EWM22291.1, cds8382 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM22291.1
Unique Name	cds8382
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037248.1:595365..595406 +
Alignment location	KK037248.1:595535..595603 +
Alignment location	KK037248.1:595814..595937 +
Alignment location	KK037248.1:596157..596234 +
Alignment location	KK037248.1:596389..596529 +
Alignment location	KK037248.1:596629..596706 +

Link to JBrowse

Properties


Property Name	Value
End range	.
End range	596706
Protein id	EWM22291.1
Product	rab gdp dissociation inhibitor alpha
Partial	true
Orig transcript id	gnl\|cribi\|Naga_101877g1.8859.mrna
Gene	GDIC1
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:595365..595406 +
KK037248.1	supercontig	KK037248.1:595535..595603 +
KK037248.1	supercontig	KK037248.1:595814..595937 +
KK037248.1	supercontig	KK037248.1:596157..596234 +
KK037248.1	supercontig	KK037248.1:596389..596529 +
KK037248.1	supercontig	KK037248.1:596629..596706 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport
GO:0007165	signal transduction
GO:0015031	protein transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0030234	enzyme regulator activity
GO:0016740	transferase activity
GO:0005093	Rab GDP-dissociation inhibitor activity

Vocabulary: **INTERPRO**
Term	Definition
IPR018203	GDP_dissociation_inhibitor
IPR000806	RabGDI

Homology

[Close]

BLAST of EWM22291.1 vs. NCBI_GenBank
Match: gi|585102769|gb|EWM22291.1| (rab gdp dissociation inhibitor alpha, partial [Nannochloropsis gaditana])

HSP 1 Score: 362.073 bits (928), Expect = 1.346e-126
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0

Query:    1 MACGNLVKILLHTKVTRYLEFKNVDGSYVFRQGKIYKVPATLDEALMTSLIGLFEKRRFRNFLSYLAKYDEKDPSTFGGYDLSRMTMRGLYDKYGLDEGTRTFTGHAMALHLDDSYLERPALETVKAIQLYVYSLERYGKSPYIYPIYGLGGLPEGFSRLCAINGGTFMLDHSVDEI 177
            MACGNLVKILLHTKVTRYLEFKNVDGSYVFRQGKIYKVPATLDEALMTSLIGLFEKRRFRNFLSYLAKYDEKDPSTFGGYDLSRMTMRGLYDKYGLDEGTRTFTGHAMALHLDDSYLERPALETVKAIQLYVYSLERYGKSPYIYPIYGLGGLPEGFSRLCAINGGTFMLDHSVDEI
Sbjct:    1 MACGNLVKILLHTKVTRYLEFKNVDGSYVFRQGKIYKVPATLDEALMTSLIGLFEKRRFRNFLSYLAKYDEKDPSTFGGYDLSRMTMRGLYDKYGLDEGTRTFTGHAMALHLDDSYLERPALETVKAIQLYVYSLERYGKSPYIYPIYGLGGLPEGFSRLCAINGGTFMLDHSVDEI 177

[Close]

BLAST of EWM22291.1 vs. NCBI_GenBank
Match: gi|299473411|emb|CBN77809.1| (rab GDP dissociation inhibitor protein [Ectocarpus siliculosus])

HSP 1 Score: 275.789 bits (704), Expect = 1.853e-88
Identity = 134/177 (75.71%), Postives = 151/177 (85.31%), Query Frame = 0

Query:    1 MACGNLVKILLHTKVTRYLEFKNVDGSYVFRQGKIYKVPATLDEALMTSLIGLFEKRRFRNFLSYLAKYDEKDPSTFGGYDLSRMTMRGLYDKYGLDEGTRTFTGHAMALHLDDSYLERPALETVKAIQLYVYSLERYGKSPYIYPIYGLGGLPEGFSRLCAINGGTFMLDHSVDEI 177
            MA GNLVK+LL TKVTRYLEFK VDGSYV + GKI KVPAT DEAL TSL+G+FEKRRFRNFL YLA YDE+ P TF G DL RMTM  LY+ +GLDE T++FTGHAMAL  DD+YL +PALET+K+IQLYV SLERYGKSPYIYP+YGLGGLPEGFSRLCAI+GGTFML   V+E+
Sbjct:  111 MANGNLVKMLLMTKVTRYLEFKTVDGSYVVKGGKINKVPATPDEALRTSLMGIFEKRRFRNFLQYLAGYDEQQPDTFKGRDLRRMTMLQLYEDFGLDENTQSFTGHAMALQRDDTYLHKPALETIKSIQLYVRSLERYGKSPYIYPMYGLGGLPEGFSRLCAIHGGTFMLQCPVEEV 287

[Close]

BLAST of EWM22291.1 vs. NCBI_GenBank
Match: gi|1173953446|gb|OQS00988.1| (rab GDP dissociation inhibitor alpha [Achlya hypogyna])

HSP 1 Score: 268.855 bits (686), Expect = 6.937e-86
Identity = 127/177 (71.75%), Postives = 149/177 (84.18%), Query Frame = 0

Query:    1 MACGNLVKILLHTKVTRYLEFKNVDGSYVFRQGKIYKVPATLDEALMTSLIGLFEKRRFRNFLSYLAKYDEKDPSTFGGYDLSRMTMRGLYDKYGLDEGTRTFTGHAMALHLDDSYLERPALETVKAIQLYVYSLERYGKSPYIYPIYGLGGLPEGFSRLCAINGGTFMLDHSVDEI 177
            MACG LVK+LLHTKVTRYL+FKNVDGSYV++ GKIYKVPAT +EAL +SL+G+FEKRRFR+ L Y+  Y+E+DPSTF G DL    M  LY K+G+D  T++FTGH MAL  DD YL RPA+E V+AI++Y YSLERYGKSPY+YPIYGLGGLPEGFSRLCAI+GGTFML  SVDEI
Sbjct:  100 MACGKLVKMLLHTKVTRYLDFKNVDGSYVYKGGKIYKVPATGEEALKSSLMGIFEKRRFRSMLMYIYNYEEEDPSTFDGMDLKVQPMSDLYAKFGVDANTQSFTGHTMALMRDDEYLNRPAIEAVRAIKMYAYSLERYGKSPYLYPIYGLGGLPEGFSRLCAIHGGTFMLHRSVDEI 276

[Close]

BLAST of EWM22291.1 vs. NCBI_GenBank
Match: gi|813177259|ref|XP_012205099.1| (hypothetical protein SPRG_10582 [Saprolegnia parasitica CBS 223.65] >gi|641530010|gb|KDO24155.1| hypothetical protein SPRG_10582 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 266.159 bits (679), Expect = 7.164e-85
Identity = 125/177 (70.62%), Postives = 148/177 (83.62%), Query Frame = 0

Query:    1 MACGNLVKILLHTKVTRYLEFKNVDGSYVFRQGKIYKVPATLDEALMTSLIGLFEKRRFRNFLSYLAKYDEKDPSTFGGYDLSRMTMRGLYDKYGLDEGTRTFTGHAMALHLDDSYLERPALETVKAIQLYVYSLERYGKSPYIYPIYGLGGLPEGFSRLCAINGGTFMLDHSVDEI 177
            MACG LVK+LLHTKVTRYL+FKNVDGSYV++ GKIYKVPAT +EAL +SL+G+FEKRRFR+ L Y+  Y+E DPSTF G DL    M  LY K+G+D  T++FTGH MAL  DD YL +PA+E V+AI++Y YSLERYGKSPY+YPIYGLGGLPEGFSRLCAI+GGTFML  SVDE+
Sbjct:  101 MACGKLVKMLLHTKVTRYLDFKNVDGSYVYKGGKIYKVPATGEEALKSSLMGIFEKRRFRSMLMYIYNYEEDDPSTFDGLDLKTQPMSDLYAKFGVDANTQSFTGHTMALMRDDEYLRQPAIEAVRAIKMYAYSLERYGKSPYLYPIYGLGGLPEGFSRLCAIHGGTFMLHRSVDEV 277

[Close]

BLAST of EWM22291.1 vs. NCBI_GenBank
Match: gi|669164014|ref|XP_008617569.1| (acetyltransferase [Saprolegnia diclina VS20] >gi|530730688|gb|EQC28930.1| acetyltransferase [Saprolegnia diclina VS20])

HSP 1 Score: 266.159 bits (679), Expect = 7.563e-85
Identity = 125/177 (70.62%), Postives = 148/177 (83.62%), Query Frame = 0

Query:    1 MACGNLVKILLHTKVTRYLEFKNVDGSYVFRQGKIYKVPATLDEALMTSLIGLFEKRRFRNFLSYLAKYDEKDPSTFGGYDLSRMTMRGLYDKYGLDEGTRTFTGHAMALHLDDSYLERPALETVKAIQLYVYSLERYGKSPYIYPIYGLGGLPEGFSRLCAINGGTFMLDHSVDEI 177
            MACG LVK+LLHTKVTRYL+FKNVDGSYV++ GKIYKVPAT +EAL +SL+G+FEKRRFR+ L Y+  Y+E DPSTF G DL    M  LY K+G+D  T++FTGH MAL  DD YL +PA+E V+AI++Y YSLERYGKSPY+YPIYGLGGLPEGFSRLCAI+GGTFML  SVDE+
Sbjct:  101 MACGKLVKMLLHTKVTRYLDFKNVDGSYVYKGGKIYKVPATGEEALKSSLMGIFEKRRFRSMLMYIYNYEEDDPSTFDGLDLKTQPMSDLYAKFGVDANTQSFTGHTMALMRDDEYLRQPAIEAVRAIKMYAYSLERYGKSPYLYPIYGLGGLPEGFSRLCAIHGGTFMLHRSVDEV 277

[Close]

BLAST of EWM22291.1 vs. NCBI_GenBank
Match: gi|1173949133|gb|OQR97204.1| (rab GDP dissociation inhibitor alpha [Thraustotheca clavata])

HSP 1 Score: 265.003 bits (676), Expect = 2.513e-84
Identity = 124/177 (70.06%), Postives = 147/177 (83.05%), Query Frame = 0

Query:    1 MACGNLVKILLHTKVTRYLEFKNVDGSYVFRQGKIYKVPATLDEALMTSLIGLFEKRRFRNFLSYLAKYDEKDPSTFGGYDLSRMTMRGLYDKYGLDEGTRTFTGHAMALHLDDSYLERPALETVKAIQLYVYSLERYGKSPYIYPIYGLGGLPEGFSRLCAINGGTFMLDHSVDEI 177
            MACG LVK+LLHTKVTRYL+FKNVDGSYV++ GKIYK+PAT  EAL TSL+G+FEKRRFR+ L Y+  Y+E DPST+ G DL    M  LY K+G+D  T++FTGH MAL  DD YL RPA++ V+AI++Y YSLERYGKSPY+YPIYGLGGLPEGFSRLCAI+GGTFML  SVD+I
Sbjct:   99 MACGKLVKMLLHTKVTRYLDFKNVDGSYVYKGGKIYKIPATSAEALNTSLMGIFEKRRFRSMLMYIYNYEEDDPSTYDGMDLKTQPMSDLYSKFGVDANTQSFTGHTMALMRDDEYLNRPAIDAVRAIKMYAYSLERYGKSPYLYPIYGLGGLPEGFSRLCAIHGGTFMLHRSVDDI 275

[Close]

BLAST of EWM22291.1 vs. NCBI_GenBank
Match: gi|325180298|emb|CCA14701.1| (rab GDP dissociation inhibitor alpha putative [Albugo laibachii Nc14])

HSP 1 Score: 263.848 bits (673), Expect = 6.315e-84
Identity = 122/177 (68.93%), Postives = 148/177 (83.62%), Query Frame = 0

Query:    1 MACGNLVKILLHTKVTRYLEFKNVDGSYVFRQGKIYKVPATLDEALMTSLIGLFEKRRFRNFLSYLAKYDEKDPSTFGGYDLSRMTMRGLYDKYGLDEGTRTFTGHAMALHLDDSYLERPALETVKAIQLYVYSLERYGKSPYIYPIYGLGGLPEGFSRLCAINGGTFMLDHSVDEI 177
            MACG LVK+LLHTKVTRYLEFKNVDGSYV + GK YKVPAT +EAL +SL+G+FEKR+FR  + Y+  Y+E +P TF G DL +  M  +++K+G+D  T++F GHAMAL  DD YLE+PA+ET+KAI+LY YSLERYGKSPY+YPIYGLGGLPEGFSRLCAI+GGTFML+  VDEI
Sbjct:  100 MACGKLVKMLLHTKVTRYLEFKNVDGSYVVKNGKSYKVPATGEEALRSSLMGIFEKRKFRKLILYIYNYEEDNPKTFEGLDLKKQPMSQVFEKFGVDANTQSFMGHAMALWTDDRYLEKPAIETIKAIKLYAYSLERYGKSPYLYPIYGLGGLPEGFSRLCAIHGGTFMLNRGVDEI 276

[Close]

BLAST of EWM22291.1 vs. NCBI_GenBank
Match: gi|673030392|ref|XP_008869157.1| (hypothetical protein H310_06034 [Aphanomyces invadans] >gi|574475552|gb|ETW02552.1| hypothetical protein H310_06034 [Aphanomyces invadans])

HSP 1 Score: 263.848 bits (673), Expect = 6.595e-84
Identity = 122/177 (68.93%), Postives = 149/177 (84.18%), Query Frame = 0

Query:    1 MACGNLVKILLHTKVTRYLEFKNVDGSYVFRQGKIYKVPATLDEALMTSLIGLFEKRRFRNFLSYLAKYDEKDPSTFGGYDLSRMTMRGLYDKYGLDEGTRTFTGHAMALHLDDSYLERPALETVKAIQLYVYSLERYGKSPYIYPIYGLGGLPEGFSRLCAINGGTFMLDHSVDEI 177
            MACG LVKILLHTKVTRYLEFKNVDGSYV++  +IYKVPAT +EAL +SL+G+FEKRRFR  + Y+  Y+E++P T  G DL +  M  +Y K+G+D  T++FTGHAMAL  DD+Y+ RPA+ETV+AI++Y YSLERYGKSPYIYPIYGLGGLPEGFSRLCAI+GGTFML+  VDE+
Sbjct:  101 MACGKLVKILLHTKVTRYLEFKNVDGSYVYKGSRIYKVPATGEEALSSSLMGIFEKRRFRGLIMYIYNYEEENPDTHQGLDLFKQPMSDVYAKFGVDANTQSFTGHAMALMRDDNYINRPAIETVRAIKMYTYSLERYGKSPYIYPIYGLGGLPEGFSRLCAIHGGTFMLNRGVDEV 277

[Close]

BLAST of EWM22291.1 vs. NCBI_GenBank
Match: gi|675173421|ref|XP_008895595.1| (hypothetical protein PPTG_04978 [Phytophthora parasitica INRA-310] >gi|567952799|gb|ETK78463.1| hypothetical protein L915_15518 [Phytophthora parasitica] >gi|567981455|gb|ETL31894.1| hypothetical protein L916_15416 [Phytophthora parasitica] >gi|568010945|gb|ETL85123.1| hypothetical protein L917_15240 [Phytophthora parasitica] >gi|568105131|gb|ETN19776.1| hypothetical protein PPTG_04978 [Phytophthora parasitica INRA-310] >gi|570319106|gb|ETO67054.1| hypothetical protein F444_15950 [Phytophthora parasitica P1976] >gi|570942871|gb|ETP08128.1| hypothetical protein F441_15807 [Phytophthora parasitica CJ01A1] >gi|570973635|gb|ETP36189.1| hypothetical protein F442_15815 [Phytophthora parasitica P10297] >gi|970633709|gb|KUF79248.1| secretory pathway GDP dissociation inhibitor 1 [Phytophthora nicotianae] >gi|970656096|gb|KUF94155.1| hypothetical protein AM588_10005811 [Phytophthora nicotianae] >gi|970663042|gb|KUG00314.1| secretory pathway GDP dissociation inhibitor 1 [Phytophthora nicotianae])

HSP 1 Score: 260.381 bits (664), Expect = 1.458e-82
Identity = 122/177 (68.93%), Postives = 146/177 (82.49%), Query Frame = 0

Query:    1 MACGNLVKILLHTKVTRYLEFKNVDGSYVFRQGKIYKVPATLDEALMTSLIGLFEKRRFRNFLSYLAKYDEKDPSTFGGYDLSRMTMRGLYDKYGLDEGTRTFTGHAMALHLDDSYLERPALETVKAIQLYVYSLERYGKSPYIYPIYGLGGLPEGFSRLCAINGGTFMLDHSVDEI 177
            MACG LVK+LLHTKVTRYLEFKNVDGSYV + G+ YKVPAT +EAL +SL+G+FEKR+FR  + Y+  Y+E DP T+ G DL +  M  L++KYG+D  T++F GHAMAL  D+SY  RPA+ETV+AI+LY YSLERYGKSPYIYP+YGLGGLPE FSRLCAINGGTFML+  VDEI
Sbjct:  100 MACGKLVKMLLHTKVTRYLEFKNVDGSYVVKGGRTYKVPATGEEALRSSLMGMFEKRKFRKLIMYIYNYEEDDPKTYEGMDLFKQPMSELFEKYGVDANTQSFMGHAMALMRDESYHNRPAIETVRAIKLYAYSLERYGKSPYIYPLYGLGGLPESFSRLCAINGGTFMLNRGVDEI 276

[Close]

BLAST of EWM22291.1 vs. NCBI_GenBank
Match: gi|301118368|ref|XP_002906912.1| (rab GDP dissociation inhibitor alpha [Phytophthora infestans T30-4] >gi|262108261|gb|EEY66313.1| rab GDP dissociation inhibitor alpha [Phytophthora infestans T30-4])

HSP 1 Score: 260.381 bits (664), Expect = 1.642e-82
Identity = 122/177 (68.93%), Postives = 147/177 (83.05%), Query Frame = 0

Query:    1 MACGNLVKILLHTKVTRYLEFKNVDGSYVFRQGKIYKVPATLDEALMTSLIGLFEKRRFRNFLSYLAKYDEKDPSTFGGYDLSRMTMRGLYDKYGLDEGTRTFTGHAMALHLDDSYLERPALETVKAIQLYVYSLERYGKSPYIYPIYGLGGLPEGFSRLCAINGGTFMLDHSVDEI 177
            MACG LVK+LLHTKVTRYLEFKNVDGSYV + G+ YKVPAT +EAL +SL+G+FEKR+FR  + Y+  Y+E DP+T+ G DL    M  L++KYG+D  T++F GHAMAL  D+SY +RPA+ETV+AI+LY YSLERYGKSPYIYP+YGLGGLPE FSRLCAINGGTFML+  VDEI
Sbjct:  100 MACGKLVKMLLHTKVTRYLEFKNVDGSYVVKGGRTYKVPATGEEALRSSLMGMFEKRKFRKLIMYIYNYEENDPTTYEGMDLFTQPMSELFEKYGVDANTQSFMGHAMALMRDESYHKRPAIETVRAIKLYAYSLERYGKSPYIYPLYGLGGLPESFSRLCAINGGTFMLNRGVDEI 276

The following BLAST results are available for this feature:

BLAST of EWM22291.1 vs. NCBI_GenBank

BLAST of EWM22291.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|585102769\|gb\|EWM22291.1\|	1.346e-126	100.00	rab gdp dissociation inhibitor alpha, partial [Nan...	[more]
gi\|299473411\|emb\|CBN77809.1\|	1.853e-88	75.71	rab GDP dissociation inhibitor protein [Ectocarpus...	[more]
gi\|1173953446\|gb\|OQS00988.1\|	6.937e-86	71.75	rab GDP dissociation inhibitor alpha [Achlya hypog...	[more]
gi\|813177259\|ref\|XP_012205099.1\|	7.164e-85	70.62	hypothetical protein SPRG_10582 [Saprolegnia paras...	[more]
gi\|669164014\|ref\|XP_008617569.1\|	7.563e-85	70.62	acetyltransferase [Saprolegnia diclina VS20] >gi\|5...	[more]
gi\|1173949133\|gb\|OQR97204.1\|	2.513e-84	70.06	rab GDP dissociation inhibitor alpha [Thraustothec...	[more]
gi\|325180298\|emb\|CCA14701.1\|	6.315e-84	68.93	rab GDP dissociation inhibitor alpha putative [Alb...	[more]
gi\|673030392\|ref\|XP_008869157.1\|	6.595e-84	68.93	hypothetical protein H310_06034 [Aphanomyces invad...	[more]
gi\|675173421\|ref\|XP_008895595.1\|	1.458e-82	68.93	hypothetical protein PPTG_04978 [Phytophthora para...	[more]
gi\|301118368\|ref\|XP_002906912.1\|	1.642e-82	68.93	rab GDP dissociation inhibitor alpha [Phytophthora...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna8409	rna8409	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications