EWM22305.1, cds8368 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22305.1 vs. NCBI_GenBank
Match: gi|585102793|gb|EWM22305.1| (coatomer subunit gamma [Nannochloropsis gaditana]) HSP 1 Score: 159.844 bits (403), Expect = 8.775e-50 Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0
Query: 1 MRTLSEVALTYPVVVTKCNDDMEALLSDANRSIGTLAITTLLKTGEEGSVDRLMKQVLQSTSFCSSAVRWRRFSLALLD 79
MRTLSEVALTYPVVVTKCNDDMEALLSDANRSIGTLAITTLLKTGEEGSVDRLMKQVLQSTSFCSSAVRWRRFSLALLD
Sbjct: 1 MRTLSEVALTYPVVVTKCNDDMEALLSDANRSIGTLAITTLLKTGEEGSVDRLMKQVLQSTSFCSSAVRWRRFSLALLD 79
BLAST of EWM22305.1 vs. NCBI_GenBank
Match: gi|695375973|ref|XP_009515671.1| (hypothetical protein PHYSODRAFT_537097 [Phytophthora sojae] >gi|348688582|gb|EGZ28396.1| hypothetical protein PHYSODRAFT_537097 [Phytophthora sojae]) HSP 1 Score: 93.5893 bits (231), Expect = 1.570e-20 Identity = 44/57 (77.19%), Postives = 53/57 (92.98%), Query Frame = 0
Query: 1 MRTLSEVALTYPVVVTKCNDDMEALLSDANRSIGTLAITTLLKTGEEGSVDRLMKQV 57
+RTLS+VALT P++VT+CN+DMEAL+SD+NRSI TLAITTLLKTG E SVDRLMKQ+
Sbjct: 341 VRTLSQVALTQPMLVTRCNEDMEALISDSNRSIATLAITTLLKTGAESSVDRLMKQI 397
BLAST of EWM22305.1 vs. NCBI_GenBank
Match: gi|298705020|emb|CBJ28495.1| (Coatomer protein complex, gamma sub-unit [Ectocarpus siliculosus]) HSP 1 Score: 93.5893 bits (231), Expect = 1.595e-20 Identity = 44/57 (77.19%), Postives = 48/57 (84.21%), Query Frame = 0
Query: 1 MRTLSEVALTYPVVVTKCNDDMEALLSDANRSIGTLAITTLLKTGEEGSVDRLMKQV 57
MRTLSEVA YP+ + KCN DME L+SD NRSI TLAITTLLKTG EGSVDRLMKQ+
Sbjct: 197 MRTLSEVAAKYPMSILKCNSDMEVLISDPNRSIATLAITTLLKTGSEGSVDRLMKQI 253
BLAST of EWM22305.1 vs. NCBI_GenBank
Match: gi|1214709145|gb|OWZ20353.1| (Coatomer subunit gamma [Phytophthora megakarya]) HSP 1 Score: 93.2041 bits (230), Expect = 1.853e-20 Identity = 44/57 (77.19%), Postives = 53/57 (92.98%), Query Frame = 0
Query: 1 MRTLSEVALTYPVVVTKCNDDMEALLSDANRSIGTLAITTLLKTGEEGSVDRLMKQV 57
+RTLS+VALT P++VT+CN+DMEAL+SD+NRSI TLAITTLLKTG E SVDRLMKQ+
Sbjct: 341 VRTLSQVALTQPMLVTRCNEDMEALISDSNRSIATLAITTLLKTGAESSVDRLMKQI 397
BLAST of EWM22305.1 vs. NCBI_GenBank
Match: gi|675189513|ref|XP_008903641.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|567992110|gb|ETL42309.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568096408|gb|ETN11159.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570953553|gb|ETP18810.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1] >gi|970628016|gb|KUF75777.1| Coatomer subunit gamma [Phytophthora nicotianae] >gi|970664188|gb|KUG01167.1| Coatomer subunit gamma [Phytophthora nicotianae]) HSP 1 Score: 92.4337 bits (228), Expect = 3.453e-20 Identity = 43/57 (75.44%), Postives = 53/57 (92.98%), Query Frame = 0
Query: 1 MRTLSEVALTYPVVVTKCNDDMEALLSDANRSIGTLAITTLLKTGEEGSVDRLMKQV 57
+RTLS+VALT P++VT+CN+DMEAL++D+NRSI TLAITTLLKTG E SVDRLMKQ+
Sbjct: 341 VRTLSQVALTQPMLVTRCNEDMEALITDSNRSIATLAITTLLKTGAESSVDRLMKQI 397
BLAST of EWM22305.1 vs. NCBI_GenBank
Match: gi|567963412|gb|ETK88911.1| (hypothetical protein, variant [Phytophthora parasitica] >gi|568021393|gb|ETL95483.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568051783|gb|ETM48682.1| hypothetical protein, variant [Phytophthora parasitica] >gi|570988264|gb|ETP46731.1| hypothetical protein, variant [Phytophthora parasitica P10297]) HSP 1 Score: 92.4337 bits (228), Expect = 3.556e-20 Identity = 43/57 (75.44%), Postives = 53/57 (92.98%), Query Frame = 0
Query: 1 MRTLSEVALTYPVVVTKCNDDMEALLSDANRSIGTLAITTLLKTGEEGSVDRLMKQV 57
+RTLS+VALT P++VT+CN+DMEAL++D+NRSI TLAITTLLKTG E SVDRLMKQ+
Sbjct: 341 VRTLSQVALTQPMLVTRCNEDMEALITDSNRSIATLAITTLLKTGAESSVDRLMKQI 397
BLAST of EWM22305.1 vs. NCBI_GenBank
Match: gi|570329833|gb|ETO77781.1| (hypothetical protein, variant [Phytophthora parasitica P1976]) HSP 1 Score: 92.4337 bits (228), Expect = 3.590e-20 Identity = 43/57 (75.44%), Postives = 53/57 (92.98%), Query Frame = 0
Query: 1 MRTLSEVALTYPVVVTKCNDDMEALLSDANRSIGTLAITTLLKTGEEGSVDRLMKQV 57
+RTLS+VALT P++VT+CN+DMEAL++D+NRSI TLAITTLLKTG E SVDRLMKQ+
Sbjct: 341 VRTLSQVALTQPMLVTRCNEDMEALITDSNRSIATLAITTLLKTGAESSVDRLMKQI 397
BLAST of EWM22305.1 vs. NCBI_GenBank
Match: gi|566026132|gb|ETI49043.1| (hypothetical protein, variant [Phytophthora parasitica P1569]) HSP 1 Score: 92.4337 bits (228), Expect = 3.661e-20 Identity = 43/57 (75.44%), Postives = 53/57 (92.98%), Query Frame = 0
Query: 1 MRTLSEVALTYPVVVTKCNDDMEALLSDANRSIGTLAITTLLKTGEEGSVDRLMKQV 57
+RTLS+VALT P++VT+CN+DMEAL++D+NRSI TLAITTLLKTG E SVDRLMKQ+
Sbjct: 341 VRTLSQVALTQPMLVTRCNEDMEALITDSNRSIATLAITTLLKTGAESSVDRLMKQI 397
BLAST of EWM22305.1 vs. NCBI_GenBank
Match: gi|970657122|gb|KUF95046.1| (hypothetical protein AM588_10011058 [Phytophthora nicotianae]) HSP 1 Score: 92.4337 bits (228), Expect = 3.767e-20 Identity = 43/57 (75.44%), Postives = 53/57 (92.98%), Query Frame = 0
Query: 1 MRTLSEVALTYPVVVTKCNDDMEALLSDANRSIGTLAITTLLKTGEEGSVDRLMKQV 57
+RTLS+VALT P++VT+CN+DMEAL++D+NRSI TLAITTLLKTG E SVDRLMKQ+
Sbjct: 348 VRTLSQVALTQPMLVTRCNEDMEALITDSNRSIATLAITTLLKTGAESSVDRLMKQI 404
BLAST of EWM22305.1 vs. NCBI_GenBank
Match: gi|953499227|emb|CEG39539.1| (coatomer subunit [Plasmopara halstedii]) HSP 1 Score: 92.4337 bits (228), Expect = 3.919e-20 Identity = 43/57 (75.44%), Postives = 53/57 (92.98%), Query Frame = 0
Query: 1 MRTLSEVALTYPVVVTKCNDDMEALLSDANRSIGTLAITTLLKTGEEGSVDRLMKQV 57
+RTLS+VALT P++VT+CN+DMEAL++D+NRSI TLAITTLLKTG E SVDRLMKQ+
Sbjct: 341 VRTLSQVALTQPMLVTRCNEDMEALITDSNRSIATLAITTLLKTGAESSVDRLMKQI 397 The following BLAST results are available for this feature:
BLAST of EWM22305.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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