EWM22305.1, cds8368 (CDS) Nannochloropsis gaditana

Overview
NameEWM22305.1
Unique Namecds8368
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:568233..568261 -
Alignment locationKK037248.1:567887..568025 -
Alignment locationKK037248.1:567732..567803 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22305.1
Productcoatomer subunit gamma
Orig transcript idgnl|cribi|Naga_102906g1.1394.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:568233..568261 -
KK037248.1supercontigKK037248.1:567887..568025 -
KK037248.1supercontigKK037248.1:567732..567803 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0016192vesicle-mediated transport
GO:0006886intracellular protein transport
Vocabulary: Cellular Component
TermDefinition
GO:0005794Golgi apparatus
GO:0016020membrane
GO:0030117membrane coat
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
Vocabulary: INTERPRO
TermDefinition
IPR017106Coatomer_gsu
IPR002553Clathrin/coatomer_adapt-like_N
IPR011989ARM-like
Homology
BLAST of EWM22305.1 vs. NCBI_GenBank
Match: gi|585102793|gb|EWM22305.1| (coatomer subunit gamma [Nannochloropsis gaditana])

HSP 1 Score: 159.844 bits (403), Expect = 8.775e-50
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0
Query:    1 MRTLSEVALTYPVVVTKCNDDMEALLSDANRSIGTLAITTLLKTGEEGSVDRLMKQVLQSTSFCSSAVRWRRFSLALLD 79
            MRTLSEVALTYPVVVTKCNDDMEALLSDANRSIGTLAITTLLKTGEEGSVDRLMKQVLQSTSFCSSAVRWRRFSLALLD
Sbjct:    1 MRTLSEVALTYPVVVTKCNDDMEALLSDANRSIGTLAITTLLKTGEEGSVDRLMKQVLQSTSFCSSAVRWRRFSLALLD 79          
BLAST of EWM22305.1 vs. NCBI_GenBank
Match: gi|695375973|ref|XP_009515671.1| (hypothetical protein PHYSODRAFT_537097 [Phytophthora sojae] >gi|348688582|gb|EGZ28396.1| hypothetical protein PHYSODRAFT_537097 [Phytophthora sojae])

HSP 1 Score: 93.5893 bits (231), Expect = 1.570e-20
Identity = 44/57 (77.19%), Postives = 53/57 (92.98%), Query Frame = 0
Query:    1 MRTLSEVALTYPVVVTKCNDDMEALLSDANRSIGTLAITTLLKTGEEGSVDRLMKQV 57
            +RTLS+VALT P++VT+CN+DMEAL+SD+NRSI TLAITTLLKTG E SVDRLMKQ+
Sbjct:  341 VRTLSQVALTQPMLVTRCNEDMEALISDSNRSIATLAITTLLKTGAESSVDRLMKQI 397          
BLAST of EWM22305.1 vs. NCBI_GenBank
Match: gi|298705020|emb|CBJ28495.1| (Coatomer protein complex, gamma sub-unit [Ectocarpus siliculosus])

HSP 1 Score: 93.5893 bits (231), Expect = 1.595e-20
Identity = 44/57 (77.19%), Postives = 48/57 (84.21%), Query Frame = 0
Query:    1 MRTLSEVALTYPVVVTKCNDDMEALLSDANRSIGTLAITTLLKTGEEGSVDRLMKQV 57
            MRTLSEVA  YP+ + KCN DME L+SD NRSI TLAITTLLKTG EGSVDRLMKQ+
Sbjct:  197 MRTLSEVAAKYPMSILKCNSDMEVLISDPNRSIATLAITTLLKTGSEGSVDRLMKQI 253          
BLAST of EWM22305.1 vs. NCBI_GenBank
Match: gi|1214709145|gb|OWZ20353.1| (Coatomer subunit gamma [Phytophthora megakarya])

HSP 1 Score: 93.2041 bits (230), Expect = 1.853e-20
Identity = 44/57 (77.19%), Postives = 53/57 (92.98%), Query Frame = 0
Query:    1 MRTLSEVALTYPVVVTKCNDDMEALLSDANRSIGTLAITTLLKTGEEGSVDRLMKQV 57
            +RTLS+VALT P++VT+CN+DMEAL+SD+NRSI TLAITTLLKTG E SVDRLMKQ+
Sbjct:  341 VRTLSQVALTQPMLVTRCNEDMEALISDSNRSIATLAITTLLKTGAESSVDRLMKQI 397          
BLAST of EWM22305.1 vs. NCBI_GenBank
Match: gi|675189513|ref|XP_008903641.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|567992110|gb|ETL42309.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568096408|gb|ETN11159.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570953553|gb|ETP18810.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1] >gi|970628016|gb|KUF75777.1| Coatomer subunit gamma [Phytophthora nicotianae] >gi|970664188|gb|KUG01167.1| Coatomer subunit gamma [Phytophthora nicotianae])

HSP 1 Score: 92.4337 bits (228), Expect = 3.453e-20
Identity = 43/57 (75.44%), Postives = 53/57 (92.98%), Query Frame = 0
Query:    1 MRTLSEVALTYPVVVTKCNDDMEALLSDANRSIGTLAITTLLKTGEEGSVDRLMKQV 57
            +RTLS+VALT P++VT+CN+DMEAL++D+NRSI TLAITTLLKTG E SVDRLMKQ+
Sbjct:  341 VRTLSQVALTQPMLVTRCNEDMEALITDSNRSIATLAITTLLKTGAESSVDRLMKQI 397          
BLAST of EWM22305.1 vs. NCBI_GenBank
Match: gi|567963412|gb|ETK88911.1| (hypothetical protein, variant [Phytophthora parasitica] >gi|568021393|gb|ETL95483.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568051783|gb|ETM48682.1| hypothetical protein, variant [Phytophthora parasitica] >gi|570988264|gb|ETP46731.1| hypothetical protein, variant [Phytophthora parasitica P10297])

HSP 1 Score: 92.4337 bits (228), Expect = 3.556e-20
Identity = 43/57 (75.44%), Postives = 53/57 (92.98%), Query Frame = 0
Query:    1 MRTLSEVALTYPVVVTKCNDDMEALLSDANRSIGTLAITTLLKTGEEGSVDRLMKQV 57
            +RTLS+VALT P++VT+CN+DMEAL++D+NRSI TLAITTLLKTG E SVDRLMKQ+
Sbjct:  341 VRTLSQVALTQPMLVTRCNEDMEALITDSNRSIATLAITTLLKTGAESSVDRLMKQI 397          
BLAST of EWM22305.1 vs. NCBI_GenBank
Match: gi|570329833|gb|ETO77781.1| (hypothetical protein, variant [Phytophthora parasitica P1976])

HSP 1 Score: 92.4337 bits (228), Expect = 3.590e-20
Identity = 43/57 (75.44%), Postives = 53/57 (92.98%), Query Frame = 0
Query:    1 MRTLSEVALTYPVVVTKCNDDMEALLSDANRSIGTLAITTLLKTGEEGSVDRLMKQV 57
            +RTLS+VALT P++VT+CN+DMEAL++D+NRSI TLAITTLLKTG E SVDRLMKQ+
Sbjct:  341 VRTLSQVALTQPMLVTRCNEDMEALITDSNRSIATLAITTLLKTGAESSVDRLMKQI 397          
BLAST of EWM22305.1 vs. NCBI_GenBank
Match: gi|566026132|gb|ETI49043.1| (hypothetical protein, variant [Phytophthora parasitica P1569])

HSP 1 Score: 92.4337 bits (228), Expect = 3.661e-20
Identity = 43/57 (75.44%), Postives = 53/57 (92.98%), Query Frame = 0
Query:    1 MRTLSEVALTYPVVVTKCNDDMEALLSDANRSIGTLAITTLLKTGEEGSVDRLMKQV 57
            +RTLS+VALT P++VT+CN+DMEAL++D+NRSI TLAITTLLKTG E SVDRLMKQ+
Sbjct:  341 VRTLSQVALTQPMLVTRCNEDMEALITDSNRSIATLAITTLLKTGAESSVDRLMKQI 397          
BLAST of EWM22305.1 vs. NCBI_GenBank
Match: gi|970657122|gb|KUF95046.1| (hypothetical protein AM588_10011058 [Phytophthora nicotianae])

HSP 1 Score: 92.4337 bits (228), Expect = 3.767e-20
Identity = 43/57 (75.44%), Postives = 53/57 (92.98%), Query Frame = 0
Query:    1 MRTLSEVALTYPVVVTKCNDDMEALLSDANRSIGTLAITTLLKTGEEGSVDRLMKQV 57
            +RTLS+VALT P++VT+CN+DMEAL++D+NRSI TLAITTLLKTG E SVDRLMKQ+
Sbjct:  348 VRTLSQVALTQPMLVTRCNEDMEALITDSNRSIATLAITTLLKTGAESSVDRLMKQI 404          
BLAST of EWM22305.1 vs. NCBI_GenBank
Match: gi|953499227|emb|CEG39539.1| (coatomer subunit [Plasmopara halstedii])

HSP 1 Score: 92.4337 bits (228), Expect = 3.919e-20
Identity = 43/57 (75.44%), Postives = 53/57 (92.98%), Query Frame = 0
Query:    1 MRTLSEVALTYPVVVTKCNDDMEALLSDANRSIGTLAITTLLKTGEEGSVDRLMKQV 57
            +RTLS+VALT P++VT+CN+DMEAL++D+NRSI TLAITTLLKTG E SVDRLMKQ+
Sbjct:  341 VRTLSQVALTQPMLVTRCNEDMEALITDSNRSIATLAITTLLKTGAESSVDRLMKQI 397          
The following BLAST results are available for this feature:
BLAST of EWM22305.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102793|gb|EWM22305.1|8.775e-50100.00coatomer subunit gamma [Nannochloropsis gaditana][more]
gi|695375973|ref|XP_009515671.1|1.570e-2077.19hypothetical protein PHYSODRAFT_537097 [Phytophtho... [more]
gi|298705020|emb|CBJ28495.1|1.595e-2077.19Coatomer protein complex, gamma sub-unit [Ectocarp... [more]
gi|1214709145|gb|OWZ20353.1|1.853e-2077.19Coatomer subunit gamma [Phytophthora megakarya][more]
gi|675189513|ref|XP_008903641.1|3.453e-2075.44hypothetical protein, variant [Phytophthora parasi... [more]
gi|567963412|gb|ETK88911.1|3.556e-2075.44hypothetical protein, variant [Phytophthora parasi... [more]
gi|570329833|gb|ETO77781.1|3.590e-2075.44hypothetical protein, variant [Phytophthora parasi... [more]
gi|566026132|gb|ETI49043.1|3.661e-2075.44hypothetical protein, variant [Phytophthora parasi... [more]
gi|970657122|gb|KUF95046.1|3.767e-2075.44hypothetical protein AM588_10011058 [Phytophthora ... [more]
gi|953499227|emb|CEG39539.1|3.919e-2075.44coatomer subunit [Plasmopara halstedii][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8395rna8395Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications