EWM22360.1, cds8303 (CDS) Nannochloropsis gaditana

Overview
NameEWM22360.1
Unique Namecds8303
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:390774..392207 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22360.1
Productg patch domain-containing protein 8
Orig transcript idgnl|cribi|Naga_100066g17.10317.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:390774..392207 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR000467G_patch_dom
IPR007087Znf_C2H2
Homology
BLAST of EWM22360.1 vs. NCBI_GenBank
Match: gi|585102861|gb|EWM22360.1| (g patch domain-containing protein 8 [Nannochloropsis gaditana])

HSP 1 Score: 946.036 bits (2444), Expect = 0.000e+0
Identity = 477/477 (100.00%), Postives = 477/477 (100.00%), Query Frame = 0
Query:    1 MSHIEKPEEGGAAKGPTSALPPASDWKAAHTGSSAHIDDDTTSYTDILETRASSMALPAATERVSFKRYETAGYLDHGTFDQATIDTPLADDNRGMKLLMKMGWKKDTPLGRAGGNGLVVPLQLVDAGLGGEGLGKGREYDTTAEEATRSRRLLDVEVKETVAIKEERALKAAKEEALKQELKAVVREFYCDICGKQYAGVSDFAVHLSGYEHGHTKRLKEAKEANRARTAAKAGNQAKQDQARHLKQMQRRMAAAGVKTGNAATKAAVPVPHPAPPSNTVSPLNPSLSTLSFHAAPPPQPSALPPPPPPPPQPLPGSAYSPSHPVSSLPLPPLPPPPESAYSRPSPSQHPPYPHGGPAPHLPPSHLHHHQHHPSLPSGHAAQTAGNYCHTHSHHSSPAPPPPPPPPPPPLPPSSALPSFSATASFPPASALSSSPHTLSSAPTNPSLSTELPPTGSRAPMTLSMSFASKAKKRIGR 477
            MSHIEKPEEGGAAKGPTSALPPASDWKAAHTGSSAHIDDDTTSYTDILETRASSMALPAATERVSFKRYETAGYLDHGTFDQATIDTPLADDNRGMKLLMKMGWKKDTPLGRAGGNGLVVPLQLVDAGLGGEGLGKGREYDTTAEEATRSRRLLDVEVKETVAIKEERALKAAKEEALKQELKAVVREFYCDICGKQYAGVSDFAVHLSGYEHGHTKRLKEAKEANRARTAAKAGNQAKQDQARHLKQMQRRMAAAGVKTGNAATKAAVPVPHPAPPSNTVSPLNPSLSTLSFHAAPPPQPSALPPPPPPPPQPLPGSAYSPSHPVSSLPLPPLPPPPESAYSRPSPSQHPPYPHGGPAPHLPPSHLHHHQHHPSLPSGHAAQTAGNYCHTHSHHSSPAPPPPPPPPPPPLPPSSALPSFSATASFPPASALSSSPHTLSSAPTNPSLSTELPPTGSRAPMTLSMSFASKAKKRIGR
Sbjct:    1 MSHIEKPEEGGAAKGPTSALPPASDWKAAHTGSSAHIDDDTTSYTDILETRASSMALPAATERVSFKRYETAGYLDHGTFDQATIDTPLADDNRGMKLLMKMGWKKDTPLGRAGGNGLVVPLQLVDAGLGGEGLGKGREYDTTAEEATRSRRLLDVEVKETVAIKEERALKAAKEEALKQELKAVVREFYCDICGKQYAGVSDFAVHLSGYEHGHTKRLKEAKEANRARTAAKAGNQAKQDQARHLKQMQRRMAAAGVKTGNAATKAAVPVPHPAPPSNTVSPLNPSLSTLSFHAAPPPQPSALPPPPPPPPQPLPGSAYSPSHPVSSLPLPPLPPPPESAYSRPSPSQHPPYPHGGPAPHLPPSHLHHHQHHPSLPSGHAAQTAGNYCHTHSHHSSPAPPPPPPPPPPPLPPSSALPSFSATASFPPASALSSSPHTLSSAPTNPSLSTELPPTGSRAPMTLSMSFASKAKKRIGR 477          
BLAST of EWM22360.1 vs. NCBI_GenBank
Match: gi|553189388|ref|XP_005854993.1| (d111 g-patch domain-containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294069|gb|EKU21369.1| d111 g-patch domain-containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 263.848 bits (673), Expect = 4.362e-84
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0
Query:  149 RSRRLLDVEVKETVAIKEERALKAAKEEALKQELKAVVREFYCDICGKQYAGVSDFAVHLSGYEHGHTKRLKEAKEANRARTAAKAGNQAKQDQARHLKQMQRRMAAAGVKTGNAATKAAVPVPHP 274
            RSRRLLDVEVKETVAIKEERALKAAKEEALKQELKAVVREFYCDICGKQYAGVSDFAVHLSGYEHGHTKRLKEAKEANRARTAAKAGNQAKQDQARHLKQMQRRMAAAGVKTGNAATKAAVPVPHP
Sbjct:    1 RSRRLLDVEVKETVAIKEERALKAAKEEALKQELKAVVREFYCDICGKQYAGVSDFAVHLSGYEHGHTKRLKEAKEANRARTAAKAGNQAKQDQARHLKQMQRRMAAAGVKTGNAATKAAVPVPHP 126          
BLAST of EWM22360.1 vs. NCBI_GenBank
Match: gi|298709577|emb|CBJ31403.1| (WW domain, G-patch, C2H2 zinc finger [Ectocarpus siliculosus])

HSP 1 Score: 164.466 bits (415), Expect = 4.528e-43
Identity = 102/261 (39.08%), Postives = 147/261 (56.32%), Query Frame = 0
Query:    1 MSHIEKPEEGGAAKGPTSALPPASDWKAAHTGSSAHIDDDTTSYTDILETRASSMALPAATERVSFKRYETAGYLDHGTFDQATIDTPLADDNRGMKLLMKMGWKKDTPLGRAGGNGLVVPLQLVDAGLGGEGLGKGREYDTTAEEATRSRRLLDVEVKETVAIKEERALKAAKEEALKQELKAVVREFYCDICGKQYAGVSDFAVHLSGYEHGHTKRLKEAKEANRARTAAKAGNQAKQDQARHLKQMQRRMAAAGVKTG 261
            +S  EKPEE        +A     D   A    S+ +    T++ DI E         A  +   FKR ET GY+D  + D A++D P+ ++NRG +LL KMGWK    LG A G+G+ VP+ ++   +   GLGK  E D   +EA R R+ LD EV ET  +K +R  KA ++E +K++++ + +EFYC+ CGKQY  V + + H S Y+H H KRLKEA EA +AR   K  N+ K+ Q +  ++MQRR+ A    TG
Sbjct:   34 VSTFEKPEE------LKTAQERHRDGMLAKGTESSALSRTVTNFDDIDEED------KAGRKTRLFKRNETQGYIDTQSLDAASLDKPIGEENRGFRLLTKMGWKLGQGLG-AKGDGITVPV-VLGTQVATLGLGKSAEDDRYTDEAARERKKLDSEVVETADMKAKRLEKAVRQETIKEQVQEMNKEFYCETCGKQYKNVGEMSNHYSSYDHHHVKRLKEAAEAEKARR-GKTFNRDKE-QRKEWEEMQRRLKATQAATG 278          
BLAST of EWM22360.1 vs. NCBI_GenBank
Match: gi|1026274726|gb|OAD07709.1| (C2H2-type zinc finger transcription factor [Mucor circinelloides f. lusitanicus CBS 277.49])

HSP 1 Score: 125.946 bits (315), Expect = 7.941e-29
Identity = 65/161 (40.37%), Postives = 96/161 (59.63%), Query Frame = 0
Query:   71 TAGYLDHGTFDQATIDTPLADDNRGMKLLMKMGWKKDTPLGRAGGNGLV--VPLQLVDAGLGGEGLGKGREYDTTAEEATRSRRLLDVE--VKETVAIKEERALKAAKEEALKQELKAVVREFYCDICGKQYAGVSDFAVHLSGYEHGHTKRLKEAKEANR 227
            +AGY+D+ T  Q +++T + +DN G +LL KMGW+    LG + G G +  + ++L D  LG   +GK  EY TT    T  R+ LD E  ++ET   K ER  +  K++A+ QELK V + FYC++C KQY  + ++  HL  Y+H H KR K+ KE  R
Sbjct:   17 SAGYIDYETTAQVSMETHIPEDNIGYRLLQKMGWQAGRGLG-SQGQGRIDPIRIELKDDSLG---VGKAEEYTTTHVSTTAKRKALDSEKQLEETEIQKMEREYRVEKKQAIAQELKEVKKAFYCELCDKQYKNIGEYEQHLQSYDHHHKKRFKDMKENTR 173          
BLAST of EWM22360.1 vs. NCBI_GenBank
Match: gi|511001646|gb|EPB83112.1| (hypothetical protein HMPREF1544_10150 [Mucor circinelloides f. circinelloides 1006PhL])

HSP 1 Score: 124.79 bits (312), Expect = 1.574e-28
Identity = 66/173 (38.15%), Postives = 100/173 (57.80%), Query Frame = 0
Query:   71 TAGYLDHGTFDQATIDTPLADDNRGMKLLMKMGWKKDTPLGRAGGNGLV--VPLQLVDAGLGGEGLGKGREYDTTAEEATRSRRLLDVE--VKETVAIKEERALKAAKEEALKQELKAVVREFYCDICGKQYAGVSDFAVHLSGYEHGHTKRLKEAKEANRARTAAKAGNQAK 239
            + GY D+ T  Q +++T + ++N G KLL KMGW+    LG + G G +  + ++L D  LG   +GK  EY +T    T  R+ LD E  ++ET   K ER  +  K++A+ QELK V + FYC++C KQY  +S++  HL  Y+H H KR K+ KE  R  T  ++  + K
Sbjct:    8 STGYSDYETTVQVSMETHIPENNIGYKLLQKMGWQAGKGLG-SQGQGRIDPIRIELKDDSLG---VGKAEEYTSTHVSTTAKRKALDSEKQLEETEIQKMEREYQVEKKQAIAQELKEVKKAFYCELCDKQYKNISEYEQHLQSYDHHHKKRFKDMKENTRNSTINQSEREKK 176          
BLAST of EWM22360.1 vs. NCBI_GenBank
Match: gi|695429254|ref|XP_009530146.1| (hypothetical protein PHYSODRAFT_334587 [Phytophthora sojae] >gi|348676579|gb|EGZ16397.1| hypothetical protein PHYSODRAFT_334587 [Phytophthora sojae])

HSP 1 Score: 120.939 bits (302), Expect = 7.934e-28
Identity = 69/165 (41.82%), Postives = 98/165 (59.39%), Query Frame = 0
Query:   93 NRGMKLLMKMGWKKDTPLGRAGGNGLVVPLQLVDAGLGGEGLGKGREYDTTAEEATRSRRLLDVEVKETVAIKEERALKAAKEEALKQELKAVVREFYCDICGKQYAGVSDFAVHLSGYEHGHTKRLKEAKEANRARTAAKAGNQAKQDQARHLKQ----MQRRM 253
            NRG +LL+KMGW+  + LGR    G+V P+++ +  L   GLGK  EYD   + AT  RR LD EV+ET     ER  + AK+E LK E+K++   FYC  C KQY  V++   HLS Y+H HTKRL+E ++  + R   +    AK  + + L+Q    +QRR+
Sbjct:   24 NRGYRLLVKMGWRSGSGLGRHE-QGIVEPVKMKE-NLVCLGLGKAEEYDKVTQLATSERRKLDAEVEETAEQVAEREARGAKQEQLKAEVKSMQAAFYCSDCRKQYKTVTEMESHLSSYDHHHTKRLRELQQQQKRRVGTEEEQSAK--RRKELQQEELMLQRRI 184          
BLAST of EWM22360.1 vs. NCBI_GenBank
Match: gi|758345353|dbj|GAN11684.1| (G patch domain-containing protein 8-like [Mucor ambiguus])

HSP 1 Score: 122.094 bits (305), Expect = 1.610e-27
Identity = 66/173 (38.15%), Postives = 99/173 (57.23%), Query Frame = 0
Query:   71 TAGYLDHGTFDQATIDTPLADDNRGMKLLMKMGWKKDTPLGRAGGNGLV--VPLQLVDAGLGGEGLGKGREYDTTAEEATRSRRLLDVE--VKETVAIKEERALKAAKEEALKQELKAVVREFYCDICGKQYAGVSDFAVHLSGYEHGHTKRLKEAKEANRARTAAKAGNQAK 239
            + GY D+    Q +++T + ++N G KLL KMGW+    LG + G G +  + ++L D  LG   +GK  EY TT    T  R+ LD E  ++ET   K ER  +  K++A+ QELK V + FYC++C KQY  +S++  HL  Y+H H KR K+ KE  R  T  ++  + K
Sbjct:   22 STGYSDYEATIQVSMETHIPENNIGYKLLQKMGWQAGRGLG-SQGQGRIDPIRIELKDDSLG---VGKAEEYTTTHVSTTAKRKALDSEKQLEETEIQKIERQYQVEKKQAIAQELKEVKKAFYCELCDKQYKNISEYEQHLQSYDHHHKKRFKDMKENTRNSTINQSEREKK 190          
BLAST of EWM22360.1 vs. NCBI_GenBank
Match: gi|1214692889|gb|OWZ07370.1| (hypothetical protein PHMEG_00020243 [Phytophthora megakarya])

HSP 1 Score: 119.783 bits (299), Expect = 2.236e-27
Identity = 71/164 (43.29%), Postives = 96/164 (58.54%), Query Frame = 0
Query:   93 NRGMKLLMKMGWKKDTPLGRAGGNGLVVPLQLVDAGLGGEGLGKGREYDTTAEEATRSRRLLDVEVKETVAIKEERALKAAKEEALKQELKAVVREFYCDICGKQYAGVSDFAVHLSGYEHGHTKRLKEAKEANRARTAAKAGN-QAKQDQARHLKQMQRRMAA 255
            NRG +LL KMGW+    LGR    G+V P+++ +  L   GLGK  EYD     AT  RR LDVEV+ET      R  K AKEE LK E+K +   FYC  C KQY  V++   HLS Y+H HTKRL++ ++  R   + +  N + K++Q +    +QRR+AA
Sbjct:   29 NRGYRLLEKMGWRSGCGLGRQE-QGIVEPIKMKE-NLVCLGLGKAEEYDEVTLLATSERRKLDVEVQETAEQIAAREAKGAKEEQLKVEVKNMQSAFYCSDCRKQYKTVTEMENHLSSYDHHHTKRLRDLQQQKRRLGSEEEQNAKRKKEQQQEELMLQRRIAA 190          
BLAST of EWM22360.1 vs. NCBI_GenBank
Match: gi|763815855|gb|KJB82707.1| (hypothetical protein B456_013G210000 [Gossypium raimondii])

HSP 1 Score: 114.775 bits (286), Expect = 9.279e-26
Identity = 75/231 (32.47%), Postives = 117/231 (50.65%), Query Frame = 0
Query:   27 KAAHTGSSAHIDDDTTSYTDILETRASSMALPAA---TERVSFKRYETAGYLDHGTFDQATIDTPLADDNRGMKLLMKMGWKKDTPLGRAGG---NGLVVPLQ--LVDAGLGGEGLGKGREYDTTAEEATRSRRLLDVEVKETVAIKEERALKAAKEEALKQELKAVVREFYCDICGKQYAGVSDFAVHLSGYEHGHTKRLKEAKEANRARTAAKAGNQAKQDQARHLKQM 249
            + A+ G+   I ++      ++E  A    LP     TE V           D     QAT+DT L   N G +LL KMGWK     G+  G    G++ P++  + D  LG   +GK  E D    E    RR LD+EV+ET    ++R + A +E+ ++ E+K + + FYC++C KQY    +F VHLS Y+H H KR KE +E +    ++   ++ K++Q R  ++M
Sbjct:   10 QGANLGTKQQISEEQAYQDSLVEDLAEDFRLPINHKPTENV-----------DLDNVQQATLDTKLNSSNVGFRLLQKMGWK-----GKGLGKDEQGIIEPIRSGIRDPKLG---IGKQEEDDFFTAEENIQRRKLDIEVEETEEHAKKREVLAEREQKIQTEVKEIRKVFYCELCNKQYKLAMEFEVHLSSYDHNHRKRFKEMREMH---GSSSRDDRQKREQQRQEREM 218          
BLAST of EWM22360.1 vs. NCBI_GenBank
Match: gi|727145883|emb|CEG72018.1| (hypothetical protein RMATCC62417_07647 [Rhizopus microsporus])

HSP 1 Score: 117.472 bits (293), Expect = 1.012e-25
Identity = 74/215 (34.42%), Postives = 122/215 (56.74%), Query Frame = 0
Query:   62 ERVSFKRYETAGYLDHGTFDQATIDTPLADDNRGMKLLMKMGWKKDTPLGRAGGNGLVVPLQLVDAGLGGEGLGKGREYDTTAEEATRSRRLLDVE--VKETVAIKEERALKAAKEEALKQELKAVVREFYCDICGKQYAGVSDFAVHLSGYEHGHTKRLKEAKEANRARTAAKAGNQAK--QDQARHLKQMQRRMAAAGVKTG-NAATKAAVPV 271
            ERVS +  E  GY+D     + T++T + + N G K++ KMGW   + LG +   G V P+ L++      G+GK +E + T   +T  RR LD E  ++ET   + ER  +A K++A+ +EL+ V R FYC++C KQY  +S++  HL  Y+H H KR KE KE+ R     ++  + +  +++ R  ++++R   A   K G  +AT  A+P+
Sbjct:   11 ERVS-RSTEPTGYIDWQQTTKITMETHIPESNIGYKMMQKMGWIAGSGLG-SHSQGRVDPI-LIEVKDETLGVGKAQELEETHVSSTAKRRALDSEKQLEETEIQRIEREYRAEKKQAIMKELEQVKRMFYCELCDKQYNKISEYEQHLQSYDHHHKKRFKEMKESTRNSELNQSERERRLAREKKREERELKRMQEAIQKKIGTTSATSTALPM 222          
The following BLAST results are available for this feature:
BLAST of EWM22360.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102861|gb|EWM22360.1|0.000e+0100.00g patch domain-containing protein 8 [Nannochlorops... [more]
gi|553189388|ref|XP_005854993.1|4.362e-84100.00d111 g-patch domain-containing protein, partial [N... [more]
gi|298709577|emb|CBJ31403.1|4.528e-4339.08WW domain, G-patch, C2H2 zinc finger [Ectocarpus s... [more]
gi|1026274726|gb|OAD07709.1|7.941e-2940.37C2H2-type zinc finger transcription factor [Mucor ... [more]
gi|511001646|gb|EPB83112.1|1.574e-2838.15hypothetical protein HMPREF1544_10150 [Mucor circi... [more]
gi|695429254|ref|XP_009530146.1|7.934e-2841.82hypothetical protein PHYSODRAFT_334587 [Phytophtho... [more]
gi|758345353|dbj|GAN11684.1|1.610e-2738.15G patch domain-containing protein 8-like [Mucor am... [more]
gi|1214692889|gb|OWZ07370.1|2.236e-2743.29hypothetical protein PHMEG_00020243 [Phytophthora ... [more]
gi|763815855|gb|KJB82707.1|9.279e-2632.47hypothetical protein B456_013G210000 [Gossypium ra... [more]
gi|727145883|emb|CEG72018.1|1.012e-2534.42hypothetical protein RMATCC62417_07647 [Rhizopus m... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8330rna8330Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications