EWM22399.1, cds8265 (CDS) Nannochloropsis gaditana

Overview
NameEWM22399.1
Unique Namecds8265
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:287377..287610 -
Alignment locationKK037248.1:287057..287208 -
Alignment locationKK037248.1:286769..286858 -
Alignment locationKK037248.1:286122..286578 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22399.1
Product2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase
Orig transcript idgnl|cribi|Naga_100067g6.2687.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:287377..287610 -
KK037248.1supercontigKK037248.1:287057..287208 -
KK037248.1supercontigKK037248.1:286769..286858 -
KK037248.1supercontigKK037248.1:286122..286578 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006629lipid metabolic process
GO:0008299isoprenoid biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0003824catalytic activity
GO:00505182-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR018294ISPD_synthase_CS
IPR029044Nucleotide-diphossugar_trans
IPR001228IspD
Homology
BLAST of EWM22399.1 vs. NCBI_GenBank
Match: gi|585102903|gb|EWM22399.1| (2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 632.869 bits (1631), Expect = 0.000e+0
Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 0
Query:    1 MTTVHGSSYRFIWFGLEMVSLFIHFTCLLPLLIGTPVTRAFMPRLNGATFLGPSNALSPVNVAHSRNRGIFCMRSNEMITVEGVSVVLLAGGVGKRMKADRPKQFIELLGKPVLLHSLEIFSTLPGVNRIVIVLDKSYRQEFSFLQEEDPRIVFADPGKERQDSVFNGFSQTLPDASVVCIHDSARPLVSQSAVLASLRDGSVHGAAVLGVPMKATVKESADGEFVLRTMNRSRLWEIQTPQVIKPDILSEAFALVTEKGLEVTDDVSMVEQVGRPVKLTMGEYTNIKLTTPEDIGVAEGFLRERAEGKL 310
            MTTVHGSSYRFIWFGLEMVSLFIHFTCLLPLLIGTPVTRAFMPRLNGATFLGPSNALSPVNVAHSRNRGIFCMRSNEMITVEGVSVVLLAGGVGKRMKADRPKQFIELLGKPVLLHSLEIFSTLPGVNRIVIVLDKSYRQEFSFLQEEDPRIVFADPGKERQDSVFNGFSQTLPDASVVCIHDSARPLVSQSAVLASLRDGSVHGAAVLGVPMKATVKESADGEFVLRTMNRSRLWEIQTPQVIKPDILSEAFALVTEKGLEVTDDVSMVEQVGRPVKLTMGEYTNIKLTTPEDIGVAEGFLRERAEGKL
Sbjct:    1 MTTVHGSSYRFIWFGLEMVSLFIHFTCLLPLLIGTPVTRAFMPRLNGATFLGPSNALSPVNVAHSRNRGIFCMRSNEMITVEGVSVVLLAGGVGKRMKADRPKQFIELLGKPVLLHSLEIFSTLPGVNRIVIVLDKSYRQEFSFLQEEDPRIVFADPGKERQDSVFNGFSQTLPDASVVCIHDSARPLVSQSAVLASLRDGSVHGAAVLGVPMKATVKESADGEFVLRTMNRSRLWEIQTPQVIKPDILSEAFALVTEKGLEVTDDVSMVEQVGRPVKLTMGEYTNIKLTTPEDIGVAEGFLRERAEGKL 310          
BLAST of EWM22399.1 vs. NCBI_GenBank
Match: gi|873225358|emb|CEM24010.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 314.694 bits (805), Expect = 7.912e-104
Identity = 156/226 (69.03%), Postives = 186/226 (82.30%), Query Frame = 0
Query:   81 VEGVSVVLLAGGVGKRMKADRPKQFIELLGKPVLLHSLEIFSTLPGVNRIVIVLDKSYRQEFSFLQEEDPRIVFADPGKERQDSVFNGFSQTLPDA-SVVCIHDSARPLVSQSAVLASLRDGSVHGAAVLGVPMKATVKESADGEFVLRTMNRSRLWEIQTPQVIKPDILSEAFALVTEKGLEVTDDVSMVEQVGRPVKLTMGEYTNIKLTTPEDIGVAEGFLRER 305
            V+ V V+LLAGGVGKRM ADRPKQF+EL+GKPVL HS+E+F TLPGV  IV+VLD++YR  F   +  D RIVFA PG+ERQDSV+NG  Q +P+  SVVCIHDSARPLV+Q  VL  +RD + HGAAV+GVPMKATVKES DG+FVLRT+ RSRLWEIQTPQVI+P +L E FALV EK L VTDDVS+VE +G+PVKLTMGEY N+K+TTPED+ +AE F+R R
Sbjct:   62 VDNVGVILLAGGVGKRMNADRPKQFLELMGKPVLEHSVELFLTLPGVKHIVLVLDEAYRDTF---RGRDERIVFAPPGEERQDSVWNGL-QAMPEGVSVVCIHDSARPLVTQGTVLQCIRDANTHGAAVVGVPMKATVKESEDGQFVLRTIERSRLWEIQTPQVIQPALLKEGFALVREKSLAVTDDVSLVELLGKPVKLTMGEYENLKITTPEDMVIAEQFMRAR 283          
BLAST of EWM22399.1 vs. NCBI_GenBank
Match: gi|551635295|ref|XP_005820482.1| (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Guillardia theta CCMP2712] >gi|428164478|gb|EKX33502.1| 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Guillardia theta CCMP2712])

HSP 1 Score: 285.804 bits (730), Expect = 5.940e-93
Identity = 139/229 (60.70%), Postives = 173/229 (75.55%), Query Frame = 0
Query:   80 TVEGVSVVLLAGGVGKRMKADRPKQFIELLGKPVLLHSLEIFSTLPGVNRIVIVLDKSYRQEFSFLQEEDPRIVFADPGKERQDSVFNGFSQTLPDASVVCIHDSARPLVSQSAVLASLRDGSVHGAAVLGVPMKATVKESADGEFVLRTMNRSRLWEIQTPQV------IKPDILSEAFALVTEKGLEVTDDVSMVEQVGRPVKLTMGEYTNIKLTTPEDIGVAEGFL 302
             ++ VSV+LLAGGVG RMKADRPKQF+EL GKP+L HSLE+F  + GV RIVIV+   YR   + + ++D RI FA+PGKERQDSVFNG  +T  D S++CIHD+ARPLV++  +L+ + D   HGAAVL VPMKATVKES DG+FVLRT+ RSRLWEI TPQV      I+P +L E F  V E  L VTDDVS++EQ+  PVK+T+GEYTNIK+TTPED+ +A   L
Sbjct:   42 AIDDVSVILLAGGVGSRMKADRPKQFLELEGKPILRHSLELFMKIQGVTRIVIVIAPEYRDSLADVTKKDARICFAEPGKERQDSVFNGLQETALDTSLICIHDAARPLVTEQEILSCMNDALEHGAAVLAVPMKATVKESEDGKFVLRTIERSRLWEIHTPQVREKEQIIRPALLREGFKKVKELNLAVTDDVSIIEQLPAPVKITVGEYTNIKITTPEDMPMARSIL 270          
BLAST of EWM22399.1 vs. NCBI_GenBank
Match: gi|298713367|emb|CBJ33583.1| (4-diphosphocytidyl-2C-methyl-D-erythritol synthase, chloroplast precursor [Ectocarpus siliculosus])

HSP 1 Score: 275.404 bits (703), Expect = 1.881e-87
Identity = 136/226 (60.18%), Postives = 174/226 (76.99%), Query Frame = 0
Query:   80 TVEGVSVVLLAGGVGKRMKADRPKQFIELLGKPVLLHSLEIFSTLPGVNRIVIVLDKSYRQEFSFLQEEDPRIVFADPGKERQDSVFNGFSQTLPDASVVCIHDSARPLVSQSAVLASLRDGSVHGAAVLGVPMKATVKESADGEFVLRTMNRSRLWEIQTPQVIKPDILSEAFALVTEKGLEVTDDVSMVEQVGRPVKLTMGEYTNIKLTTPEDIGVAEGFLRER 305
            TVE V+ V+LAGGVGKRM+A  PKQF+EL G+ VL HSL++F  L GV+++++VLD+ YR     LQ+ + R+VFADPG ERQ SV+N   +    +S+VCIHD+ARPLV+++AV   + D   +GAAVLGVPMKATVKESADG+FV RT++RSRLW+IQTPQV+KPD+L   F  V  +  EVTDDVS+VEQ+G PVKLT G+YTN+KLTTPED+ VA   L  R
Sbjct:   55 TVENVAAVVLAGGVGKRMEAGMPKQFLELQGETVLEHSLKLFLRLKGVSQLILVLDEQYRPMLQDLQKREGRLVFADPGLERQHSVYNALQKVEDGSSLVCIHDAARPLVTKAAVKKVIADADEYGAAVLGVPMKATVKESADGQFVQRTIDRSRLWDIQTPQVVKPDLLRRGFDKVMSERWEVTDDVSIVEQLGLPVKLTEGDYTNLKLTTPEDLVVASRILEAR 280          
BLAST of EWM22399.1 vs. NCBI_GenBank
Match: gi|676383235|ref|XP_009034896.1| (hypothetical protein AURANDRAFT_23670 [Aureococcus anophagefferens] >gi|323454191|gb|EGB10061.1| hypothetical protein AURANDRAFT_23670 [Aureococcus anophagefferens])

HSP 1 Score: 263.848 bits (673), Expect = 2.583e-84
Identity = 132/216 (61.11%), Postives = 165/216 (76.39%), Query Frame = 0
Query:   91 GGVGKRMKADRPKQFIELLGKPVLLHSLEIFSTLPGVNRIVIVLDKSYRQEFSFLQEEDPRIVFADPGKERQDSVFNGFSQTLPDASVVCIHDSARPLVSQSAVLASLRDGSVHGAAVLGVPMKATVKESADGEFVLRTMNRSRLWEIQTPQVIKPDILSEAFALVTEKGLEVTDDVSMVEQVGRPVKLTMGEYTNIKLTTPEDIGVAEGFLRERA 306
            GGVG RMKADRPKQ   L GKPVL HSL++F  L GV+ +V+V+++ YR EF+     D R+ FADPG ERQDSV +G      DA++VCIHD+ARPLV+   +   + D   HGAAVLGVP+KATVKES DGEFVLRT++RSRLWE+ TPQVIKP +L E F  V ++GLEVTDDVS++EQ+G PVKLT+GEYTN+K+TTP+D+ VA   L +RA
Sbjct:   49 GGVGSRMKADRPKQ--RLAGKPVLYHSLDLFLGLEGVSSLVLVINEQYRGEFAPYAA-DGRVTFADPGAERQDSVRSGLDACPADAALVCIHDAARPLVTPEEIFKVIGDARDHGAAVLGVPVKATVKESDDGEFVLRTVDRSRLWEVHTPQVIKPALLREGFDKVAKEGLEVTDDVSIIEQLGLPVKLTLGEYTNLKVTTPDDMVVATQILDQRA 261          
BLAST of EWM22399.1 vs. NCBI_GenBank
Match: gi|545370060|ref|XP_005649705.1| (2-C-methyl-D-erythritol 4-phosphate cy [Coccomyxa subellipsoidea C-169] >gi|384251684|gb|EIE25161.1| 2-C-methyl-D-erythritol 4-phosphate cy [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 258.07 bits (658), Expect = 3.314e-82
Identity = 127/224 (56.70%), Postives = 167/224 (74.55%), Query Frame = 0
Query:   84 VSVVLLAGGVGKRMKADRPKQFIELLGKPVLLHSLEIFSTLPGVNRIVIVLDKSYRQEFSFLQEE---DPRIVFADPGKERQDSVFNGFSQTLPDASVVCIHDSARPLVSQSAVLASLRDGSVHGAAVLGVPMKATVKESADGEFVLRTMNRSRLWEIQTPQVIKPDILSEAFALVTEKGLEVTDDVSMVEQVGRPVKLTMGEYTNIKLTTPEDIGVAEGFLRE 304
            VS +LLAGGVGKRM A  PKQ++ELLG+P+ ++SL+  S++P +  +VIV D SYR+ F    +     P +VFA+PGKERQDSV+NGF+ + PD+ +V IHDSARPLV+   V   L+DG   GAAVLGVP+K T+KE      V++T+ R+ LWE+QTPQVI+P +L E F LV EK LEVTDDVS++E +GRPV++T G YTNIK+TTP+D+ VAE FL E
Sbjct:   26 VSFILLAGGVGKRMGASIPKQYLELLGQPIAMYSLQTMSSMPEIGEVVIVCDPSYRELFQGYYDRLPVKPLLVFAEPGKERQDSVYNGFAASNPDSVLVAIHDSARPLVTVQDVRRCLKDGLEVGAAVLGVPVKPTIKEVDSDRNVVKTLARAALWEVQTPQVIRPALLKEGFELVREKSLEVTDDVSIIEALGRPVRVTQGSYTNIKVTTPDDMSVAERFLSE 249          
BLAST of EWM22399.1 vs. NCBI_GenBank
Match: gi|971518400|dbj|GAQ79774.1| (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Klebsormidium nitens])

HSP 1 Score: 257.299 bits (656), Expect = 1.095e-81
Identity = 129/236 (54.66%), Postives = 166/236 (70.34%), Query Frame = 0
Query:   75 SNEMITVEGVSVVLLAGGVGKRMKADRPKQFIELLGKPVLLHSLEIFSTLPGVNRIVIVLDKSYRQEF-SFLQEEDPRIVFADPGKERQDSVFNGFSQTLPDASVVCIHDSARPLVSQSAVLASLRDGSVHGAAVLGVPMKATVKESADGEFVLRTMNRSRLWEIQTPQVIKPDILSEAFALVTEKGLEVTDDVSMVEQVGRPVKLTMGEYTNIKLTTPEDIGVAEGFLRERAEGK 309
            S E++    VSVVLLAGGVGKRM A  PKQ++ + G+P+ L+SL +F++L  V  I++V D SYRQ F   +Q+    + +A PGKERQDSVFNG  +    A +VC+HDSARPL++        RDG  HGAAVLGVP+K T+KE+  G FV RT+NRS LWE+QTPQVIKPD+L   F  V  +GLEVTDDVS+VE +  PVK+T G YTNIK+TTPED+ +AE  + E  E +
Sbjct:   16 SQEVVPAGSVSVVLLAGGVGKRMGASMPKQYLPIRGQPIALYSLALFASLKEVGEIIVVCDPSYRQLFEDAIQKSGRTLQWASPGKERQDSVFNGLQEVRTSAGLVCVHDSARPLLTHEDARRVFRDGLRHGAAVLGVPVKQTIKEAKAGGFVARTLNRSLLWEMQTPQVIKPDLLRRGFEHVRREGLEVTDDVSIVEYLNAPVKITQGSYTNIKVTTPEDLLLAEKLIAEAEEQR 251          
BLAST of EWM22399.1 vs. NCBI_GenBank
Match: gi|545705845|ref|XP_005705241.1| (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Galdieria sulphuraria] >gi|452821694|gb|EME28721.1| 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Galdieria sulphuraria])

HSP 1 Score: 258.455 bits (659), Expect = 1.756e-81
Identity = 124/234 (52.99%), Postives = 168/234 (71.79%), Query Frame = 0
Query:   72 CMRSNEMITVEGVSVVLLAGGVGKRMKADRPKQFIELLGKPVLLHSLEIFSTLPGVNRIVIVLDKSYRQEFSFLQEEDPRIVFADPGKERQDSVFNGFSQTLPDASVVCIHDSARPLVSQSAVLASLRDGSVHGAAVLGVPMKATVKESADGEFVLRTMNRSRLWEIQTPQVIKPDILSEAFALVTEKGLEVTDDVSMVEQVGRPVKLTMGEYTNIKLTTPEDIGVAEGFLRER 305
            C  +N        SV+LLAGG GKRM ++ PKQ++ L GKPVL +SLE+F ++  V +++IV+D  Y+        +DPR+ FA PGKERQDSV+NG  +   +  +VCIHD+ARPLVS+  +     D +V+GAAV+GVP K+T+KES DG FV RT++R+RLWEIQTPQVI+P++L   F  V ++ + VTDDVS+VE++G PVKLT+GEY+NIKLTT ED+ VAE  L  R
Sbjct:   78 CCSNNNNGRESSCSVILLAGGSGKRMNSNIPKQYLLLHGKPVLEYSLELFLSVKQVFQVIIVMDLHYKVFLCPHLIQDPRVEFACPGKERQDSVYNGLQKVKNNVDLVCIHDAARPLVSKETIEKCFSDAAVYGAAVVGVPSKSTIKESVDGSFVYRTLDRTRLWEIQTPQVIRPELLRRGFVRVNDENVTVTDDVSIVEKLGEPVKLTLGEYSNIKLTTEEDLKVAEYILLSR 311          
BLAST of EWM22399.1 vs. NCBI_GenBank
Match: gi|224284768|gb|ACN40114.1| (unknown [Picea sitchensis])

HSP 1 Score: 253.447 bits (646), Expect = 1.385e-79
Identity = 128/238 (53.78%), Postives = 167/238 (70.17%), Query Frame = 0
Query:   74 RSNEMITVEGVSVVLLAGGVGKRMKADRPKQFIELLGKPVLLHSLEIFSTLPGVNRIVIVLDKSYRQEFSFLQEEDPR------IVFADPGKERQDSVFNGFSQTLPDASVVCIHDSARPLVSQSAVLASLRDGSVHGAAVLGVPMKATVKESADGEFVLRTMNRSRLWEIQTPQVIKPDILSEAFALVTEKGLEVTDDVSMVEQVGRPVKLTMGEYTNIKLTTPEDIGVAEGFLRER 305
            ++NE++  + VSV+LLAGG GKRM A+ PKQ++ LLG+P+ L+S  IFS +  V  IV+V D SYR  F     E+ R      + FA PGKERQDSVFNG  +      +VC+HDSARPLV    V   L+D  VHGAAVLGVP+KAT+KE+++  FV RT+NR  LWE+QTPQVIKP +L + F +V  +GLEVTDDVS+VE +  PV +T G Y+NIK+TTP+DI +AE  L +R
Sbjct:   87 QANELVPKKSVSVILLAGGKGKRMGANIPKQYLPLLGQPIALYSFHIFSLMSEVKEIVVVCDPSYRDIF-----EEARNSMTVYLKFASPGKERQDSVFNGLQEVDQTTELVCVHDSARPLVLSGNVKKVLKDAWVHGAAVLGVPVKATIKEASNDSFVTRTLNRQTLWEMQTPQVIKPSLLRKGFEVVHREGLEVTDDVSIVEHLKHPVYITEGSYSNIKVTTPDDILLAERILNQR 319          
BLAST of EWM22399.1 vs. NCBI_GenBank
Match: gi|357126250|ref|XP_003564801.1| (PREDICTED: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic [Brachypodium distachyon] >gi|944075470|gb|KQK10954.1| hypothetical protein BRADI_2g57260 [Brachypodium distachyon])

HSP 1 Score: 249.98 bits (637), Expect = 1.913e-78
Identity = 125/243 (51.44%), Postives = 168/243 (69.14%), Query Frame = 0
Query:   67 NRGIFCMRSN----EMITVEGVSVVLLAGGVGKRMKADRPKQFIELLGKPVLLHSLEIFSTLPGVNRIVIVLDKSYRQEF-SFLQEEDPRIVFADPGKERQDSVFNGFSQTLPDASVVCIHDSARPLVSQSAVLASLRDGSVHGAAVLGVPMKATVKESADGEFVLRTMNRSRLWEIQTPQVIKPDILSEAFALVTEKGLEVTDDVSMVEQVGRPVKLTMGEYTNIKLTTPEDIGVAEGFLRE 304
            N  IF +R++    + +    VSV+LL+GG GKRM A+ PKQ+I LLG P+ LHSL  F  +  V  +++V D SYR  F   ++     I FA PGKERQDSVFNG  +   D+ +VC+HDSARPLVS   V   L D +VHGAAVLGVP+KAT+KE++   FV++T++R  LWE+QTPQV++P++L + F LV   GLEVTDDVS+VE +  PV +T G YTNIK+TTP+D+ +AE  + E
Sbjct:   51 NSAIFAVRADGAQGDAVKERSVSVILLSGGQGKRMGANMPKQYIPLLGTPIALHSLRTFCRMKEVKEVIVVCDPSYRNVFEDSIENLQIPIKFACPGKERQDSVFNGLQEIDRDSELVCVHDSARPLVSSKDVKKVLEDAAVHGAAVLGVPVKATIKEASSDSFVVKTLDRKTLWEMQTPQVMEPNLLKDGFDLVKRDGLEVTDDVSIVEYLKHPVYITEGSYTNIKVTTPDDLLLAERLMNE 293          
The following BLAST results are available for this feature:
BLAST of EWM22399.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102903|gb|EWM22399.1|0.000e+0100.002-c-methyl-d-erythritol 4-phosphate cytidylyltrans... [more]
gi|873225358|emb|CEM24010.1|7.912e-10469.03unnamed protein product [Vitrella brassicaformis C... [more]
gi|551635295|ref|XP_005820482.1|5.940e-9360.702-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
gi|298713367|emb|CBJ33583.1|1.881e-8760.184-diphosphocytidyl-2C-methyl-D-erythritol synthase... [more]
gi|676383235|ref|XP_009034896.1|2.583e-8461.11hypothetical protein AURANDRAFT_23670 [Aureococcus... [more]
gi|545370060|ref|XP_005649705.1|3.314e-8256.702-C-methyl-D-erythritol 4-phosphate cy [Coccomyxa ... [more]
gi|971518400|dbj|GAQ79774.1|1.095e-8154.662-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
gi|545705845|ref|XP_005705241.1|1.756e-8152.992-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
gi|224284768|gb|ACN40114.1|1.385e-7953.78unknown [Picea sitchensis][more]
gi|357126250|ref|XP_003564801.1|1.913e-7851.44PREDICTED: 2-C-methyl-D-erythritol 4-phosphate cyt... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8289rna8289Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications