EWM22399.1, cds8265 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22399.1 vs. NCBI_GenBank
Match: gi|585102903|gb|EWM22399.1| (2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 632.869 bits (1631), Expect = 0.000e+0 Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 0
Query: 1 MTTVHGSSYRFIWFGLEMVSLFIHFTCLLPLLIGTPVTRAFMPRLNGATFLGPSNALSPVNVAHSRNRGIFCMRSNEMITVEGVSVVLLAGGVGKRMKADRPKQFIELLGKPVLLHSLEIFSTLPGVNRIVIVLDKSYRQEFSFLQEEDPRIVFADPGKERQDSVFNGFSQTLPDASVVCIHDSARPLVSQSAVLASLRDGSVHGAAVLGVPMKATVKESADGEFVLRTMNRSRLWEIQTPQVIKPDILSEAFALVTEKGLEVTDDVSMVEQVGRPVKLTMGEYTNIKLTTPEDIGVAEGFLRERAEGKL 310
MTTVHGSSYRFIWFGLEMVSLFIHFTCLLPLLIGTPVTRAFMPRLNGATFLGPSNALSPVNVAHSRNRGIFCMRSNEMITVEGVSVVLLAGGVGKRMKADRPKQFIELLGKPVLLHSLEIFSTLPGVNRIVIVLDKSYRQEFSFLQEEDPRIVFADPGKERQDSVFNGFSQTLPDASVVCIHDSARPLVSQSAVLASLRDGSVHGAAVLGVPMKATVKESADGEFVLRTMNRSRLWEIQTPQVIKPDILSEAFALVTEKGLEVTDDVSMVEQVGRPVKLTMGEYTNIKLTTPEDIGVAEGFLRERAEGKL
Sbjct: 1 MTTVHGSSYRFIWFGLEMVSLFIHFTCLLPLLIGTPVTRAFMPRLNGATFLGPSNALSPVNVAHSRNRGIFCMRSNEMITVEGVSVVLLAGGVGKRMKADRPKQFIELLGKPVLLHSLEIFSTLPGVNRIVIVLDKSYRQEFSFLQEEDPRIVFADPGKERQDSVFNGFSQTLPDASVVCIHDSARPLVSQSAVLASLRDGSVHGAAVLGVPMKATVKESADGEFVLRTMNRSRLWEIQTPQVIKPDILSEAFALVTEKGLEVTDDVSMVEQVGRPVKLTMGEYTNIKLTTPEDIGVAEGFLRERAEGKL 310
BLAST of EWM22399.1 vs. NCBI_GenBank
Match: gi|873225358|emb|CEM24010.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 314.694 bits (805), Expect = 7.912e-104 Identity = 156/226 (69.03%), Postives = 186/226 (82.30%), Query Frame = 0
Query: 81 VEGVSVVLLAGGVGKRMKADRPKQFIELLGKPVLLHSLEIFSTLPGVNRIVIVLDKSYRQEFSFLQEEDPRIVFADPGKERQDSVFNGFSQTLPDA-SVVCIHDSARPLVSQSAVLASLRDGSVHGAAVLGVPMKATVKESADGEFVLRTMNRSRLWEIQTPQVIKPDILSEAFALVTEKGLEVTDDVSMVEQVGRPVKLTMGEYTNIKLTTPEDIGVAEGFLRER 305
V+ V V+LLAGGVGKRM ADRPKQF+EL+GKPVL HS+E+F TLPGV IV+VLD++YR F + D RIVFA PG+ERQDSV+NG Q +P+ SVVCIHDSARPLV+Q VL +RD + HGAAV+GVPMKATVKES DG+FVLRT+ RSRLWEIQTPQVI+P +L E FALV EK L VTDDVS+VE +G+PVKLTMGEY N+K+TTPED+ +AE F+R R
Sbjct: 62 VDNVGVILLAGGVGKRMNADRPKQFLELMGKPVLEHSVELFLTLPGVKHIVLVLDEAYRDTF---RGRDERIVFAPPGEERQDSVWNGL-QAMPEGVSVVCIHDSARPLVTQGTVLQCIRDANTHGAAVVGVPMKATVKESEDGQFVLRTIERSRLWEIQTPQVIQPALLKEGFALVREKSLAVTDDVSLVELLGKPVKLTMGEYENLKITTPEDMVIAEQFMRAR 283
BLAST of EWM22399.1 vs. NCBI_GenBank
Match: gi|551635295|ref|XP_005820482.1| (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Guillardia theta CCMP2712] >gi|428164478|gb|EKX33502.1| 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Guillardia theta CCMP2712]) HSP 1 Score: 285.804 bits (730), Expect = 5.940e-93 Identity = 139/229 (60.70%), Postives = 173/229 (75.55%), Query Frame = 0
Query: 80 TVEGVSVVLLAGGVGKRMKADRPKQFIELLGKPVLLHSLEIFSTLPGVNRIVIVLDKSYRQEFSFLQEEDPRIVFADPGKERQDSVFNGFSQTLPDASVVCIHDSARPLVSQSAVLASLRDGSVHGAAVLGVPMKATVKESADGEFVLRTMNRSRLWEIQTPQV------IKPDILSEAFALVTEKGLEVTDDVSMVEQVGRPVKLTMGEYTNIKLTTPEDIGVAEGFL 302
++ VSV+LLAGGVG RMKADRPKQF+EL GKP+L HSLE+F + GV RIVIV+ YR + + ++D RI FA+PGKERQDSVFNG +T D S++CIHD+ARPLV++ +L+ + D HGAAVL VPMKATVKES DG+FVLRT+ RSRLWEI TPQV I+P +L E F V E L VTDDVS++EQ+ PVK+T+GEYTNIK+TTPED+ +A L
Sbjct: 42 AIDDVSVILLAGGVGSRMKADRPKQFLELEGKPILRHSLELFMKIQGVTRIVIVIAPEYRDSLADVTKKDARICFAEPGKERQDSVFNGLQETALDTSLICIHDAARPLVTEQEILSCMNDALEHGAAVLAVPMKATVKESEDGKFVLRTIERSRLWEIHTPQVREKEQIIRPALLREGFKKVKELNLAVTDDVSIIEQLPAPVKITVGEYTNIKITTPEDMPMARSIL 270
BLAST of EWM22399.1 vs. NCBI_GenBank
Match: gi|298713367|emb|CBJ33583.1| (4-diphosphocytidyl-2C-methyl-D-erythritol synthase, chloroplast precursor [Ectocarpus siliculosus]) HSP 1 Score: 275.404 bits (703), Expect = 1.881e-87 Identity = 136/226 (60.18%), Postives = 174/226 (76.99%), Query Frame = 0
Query: 80 TVEGVSVVLLAGGVGKRMKADRPKQFIELLGKPVLLHSLEIFSTLPGVNRIVIVLDKSYRQEFSFLQEEDPRIVFADPGKERQDSVFNGFSQTLPDASVVCIHDSARPLVSQSAVLASLRDGSVHGAAVLGVPMKATVKESADGEFVLRTMNRSRLWEIQTPQVIKPDILSEAFALVTEKGLEVTDDVSMVEQVGRPVKLTMGEYTNIKLTTPEDIGVAEGFLRER 305
TVE V+ V+LAGGVGKRM+A PKQF+EL G+ VL HSL++F L GV+++++VLD+ YR LQ+ + R+VFADPG ERQ SV+N + +S+VCIHD+ARPLV+++AV + D +GAAVLGVPMKATVKESADG+FV RT++RSRLW+IQTPQV+KPD+L F V + EVTDDVS+VEQ+G PVKLT G+YTN+KLTTPED+ VA L R
Sbjct: 55 TVENVAAVVLAGGVGKRMEAGMPKQFLELQGETVLEHSLKLFLRLKGVSQLILVLDEQYRPMLQDLQKREGRLVFADPGLERQHSVYNALQKVEDGSSLVCIHDAARPLVTKAAVKKVIADADEYGAAVLGVPMKATVKESADGQFVQRTIDRSRLWDIQTPQVVKPDLLRRGFDKVMSERWEVTDDVSIVEQLGLPVKLTEGDYTNLKLTTPEDLVVASRILEAR 280
BLAST of EWM22399.1 vs. NCBI_GenBank
Match: gi|676383235|ref|XP_009034896.1| (hypothetical protein AURANDRAFT_23670 [Aureococcus anophagefferens] >gi|323454191|gb|EGB10061.1| hypothetical protein AURANDRAFT_23670 [Aureococcus anophagefferens]) HSP 1 Score: 263.848 bits (673), Expect = 2.583e-84 Identity = 132/216 (61.11%), Postives = 165/216 (76.39%), Query Frame = 0
Query: 91 GGVGKRMKADRPKQFIELLGKPVLLHSLEIFSTLPGVNRIVIVLDKSYRQEFSFLQEEDPRIVFADPGKERQDSVFNGFSQTLPDASVVCIHDSARPLVSQSAVLASLRDGSVHGAAVLGVPMKATVKESADGEFVLRTMNRSRLWEIQTPQVIKPDILSEAFALVTEKGLEVTDDVSMVEQVGRPVKLTMGEYTNIKLTTPEDIGVAEGFLRERA 306
GGVG RMKADRPKQ L GKPVL HSL++F L GV+ +V+V+++ YR EF+ D R+ FADPG ERQDSV +G DA++VCIHD+ARPLV+ + + D HGAAVLGVP+KATVKES DGEFVLRT++RSRLWE+ TPQVIKP +L E F V ++GLEVTDDVS++EQ+G PVKLT+GEYTN+K+TTP+D+ VA L +RA
Sbjct: 49 GGVGSRMKADRPKQ--RLAGKPVLYHSLDLFLGLEGVSSLVLVINEQYRGEFAPYAA-DGRVTFADPGAERQDSVRSGLDACPADAALVCIHDAARPLVTPEEIFKVIGDARDHGAAVLGVPVKATVKESDDGEFVLRTVDRSRLWEVHTPQVIKPALLREGFDKVAKEGLEVTDDVSIIEQLGLPVKLTLGEYTNLKVTTPDDMVVATQILDQRA 261
BLAST of EWM22399.1 vs. NCBI_GenBank
Match: gi|545370060|ref|XP_005649705.1| (2-C-methyl-D-erythritol 4-phosphate cy [Coccomyxa subellipsoidea C-169] >gi|384251684|gb|EIE25161.1| 2-C-methyl-D-erythritol 4-phosphate cy [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 258.07 bits (658), Expect = 3.314e-82 Identity = 127/224 (56.70%), Postives = 167/224 (74.55%), Query Frame = 0
Query: 84 VSVVLLAGGVGKRMKADRPKQFIELLGKPVLLHSLEIFSTLPGVNRIVIVLDKSYRQEFSFLQEE---DPRIVFADPGKERQDSVFNGFSQTLPDASVVCIHDSARPLVSQSAVLASLRDGSVHGAAVLGVPMKATVKESADGEFVLRTMNRSRLWEIQTPQVIKPDILSEAFALVTEKGLEVTDDVSMVEQVGRPVKLTMGEYTNIKLTTPEDIGVAEGFLRE 304
VS +LLAGGVGKRM A PKQ++ELLG+P+ ++SL+ S++P + +VIV D SYR+ F + P +VFA+PGKERQDSV+NGF+ + PD+ +V IHDSARPLV+ V L+DG GAAVLGVP+K T+KE V++T+ R+ LWE+QTPQVI+P +L E F LV EK LEVTDDVS++E +GRPV++T G YTNIK+TTP+D+ VAE FL E
Sbjct: 26 VSFILLAGGVGKRMGASIPKQYLELLGQPIAMYSLQTMSSMPEIGEVVIVCDPSYRELFQGYYDRLPVKPLLVFAEPGKERQDSVYNGFAASNPDSVLVAIHDSARPLVTVQDVRRCLKDGLEVGAAVLGVPVKPTIKEVDSDRNVVKTLARAALWEVQTPQVIRPALLKEGFELVREKSLEVTDDVSIIEALGRPVRVTQGSYTNIKVTTPDDMSVAERFLSE 249
BLAST of EWM22399.1 vs. NCBI_GenBank
Match: gi|971518400|dbj|GAQ79774.1| (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Klebsormidium nitens]) HSP 1 Score: 257.299 bits (656), Expect = 1.095e-81 Identity = 129/236 (54.66%), Postives = 166/236 (70.34%), Query Frame = 0
Query: 75 SNEMITVEGVSVVLLAGGVGKRMKADRPKQFIELLGKPVLLHSLEIFSTLPGVNRIVIVLDKSYRQEF-SFLQEEDPRIVFADPGKERQDSVFNGFSQTLPDASVVCIHDSARPLVSQSAVLASLRDGSVHGAAVLGVPMKATVKESADGEFVLRTMNRSRLWEIQTPQVIKPDILSEAFALVTEKGLEVTDDVSMVEQVGRPVKLTMGEYTNIKLTTPEDIGVAEGFLRERAEGK 309
S E++ VSVVLLAGGVGKRM A PKQ++ + G+P+ L+SL +F++L V I++V D SYRQ F +Q+ + +A PGKERQDSVFNG + A +VC+HDSARPL++ RDG HGAAVLGVP+K T+KE+ G FV RT+NRS LWE+QTPQVIKPD+L F V +GLEVTDDVS+VE + PVK+T G YTNIK+TTPED+ +AE + E E +
Sbjct: 16 SQEVVPAGSVSVVLLAGGVGKRMGASMPKQYLPIRGQPIALYSLALFASLKEVGEIIVVCDPSYRQLFEDAIQKSGRTLQWASPGKERQDSVFNGLQEVRTSAGLVCVHDSARPLLTHEDARRVFRDGLRHGAAVLGVPVKQTIKEAKAGGFVARTLNRSLLWEMQTPQVIKPDLLRRGFEHVRREGLEVTDDVSIVEYLNAPVKITQGSYTNIKVTTPEDLLLAEKLIAEAEEQR 251
BLAST of EWM22399.1 vs. NCBI_GenBank
Match: gi|545705845|ref|XP_005705241.1| (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Galdieria sulphuraria] >gi|452821694|gb|EME28721.1| 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Galdieria sulphuraria]) HSP 1 Score: 258.455 bits (659), Expect = 1.756e-81 Identity = 124/234 (52.99%), Postives = 168/234 (71.79%), Query Frame = 0
Query: 72 CMRSNEMITVEGVSVVLLAGGVGKRMKADRPKQFIELLGKPVLLHSLEIFSTLPGVNRIVIVLDKSYRQEFSFLQEEDPRIVFADPGKERQDSVFNGFSQTLPDASVVCIHDSARPLVSQSAVLASLRDGSVHGAAVLGVPMKATVKESADGEFVLRTMNRSRLWEIQTPQVIKPDILSEAFALVTEKGLEVTDDVSMVEQVGRPVKLTMGEYTNIKLTTPEDIGVAEGFLRER 305
C +N SV+LLAGG GKRM ++ PKQ++ L GKPVL +SLE+F ++ V +++IV+D Y+ +DPR+ FA PGKERQDSV+NG + + +VCIHD+ARPLVS+ + D +V+GAAV+GVP K+T+KES DG FV RT++R+RLWEIQTPQVI+P++L F V ++ + VTDDVS+VE++G PVKLT+GEY+NIKLTT ED+ VAE L R
Sbjct: 78 CCSNNNNGRESSCSVILLAGGSGKRMNSNIPKQYLLLHGKPVLEYSLELFLSVKQVFQVIIVMDLHYKVFLCPHLIQDPRVEFACPGKERQDSVYNGLQKVKNNVDLVCIHDAARPLVSKETIEKCFSDAAVYGAAVVGVPSKSTIKESVDGSFVYRTLDRTRLWEIQTPQVIRPELLRRGFVRVNDENVTVTDDVSIVEKLGEPVKLTLGEYSNIKLTTEEDLKVAEYILLSR 311
BLAST of EWM22399.1 vs. NCBI_GenBank
Match: gi|224284768|gb|ACN40114.1| (unknown [Picea sitchensis]) HSP 1 Score: 253.447 bits (646), Expect = 1.385e-79 Identity = 128/238 (53.78%), Postives = 167/238 (70.17%), Query Frame = 0
Query: 74 RSNEMITVEGVSVVLLAGGVGKRMKADRPKQFIELLGKPVLLHSLEIFSTLPGVNRIVIVLDKSYRQEFSFLQEEDPR------IVFADPGKERQDSVFNGFSQTLPDASVVCIHDSARPLVSQSAVLASLRDGSVHGAAVLGVPMKATVKESADGEFVLRTMNRSRLWEIQTPQVIKPDILSEAFALVTEKGLEVTDDVSMVEQVGRPVKLTMGEYTNIKLTTPEDIGVAEGFLRER 305
++NE++ + VSV+LLAGG GKRM A+ PKQ++ LLG+P+ L+S IFS + V IV+V D SYR F E+ R + FA PGKERQDSVFNG + +VC+HDSARPLV V L+D VHGAAVLGVP+KAT+KE+++ FV RT+NR LWE+QTPQVIKP +L + F +V +GLEVTDDVS+VE + PV +T G Y+NIK+TTP+DI +AE L +R
Sbjct: 87 QANELVPKKSVSVILLAGGKGKRMGANIPKQYLPLLGQPIALYSFHIFSLMSEVKEIVVVCDPSYRDIF-----EEARNSMTVYLKFASPGKERQDSVFNGLQEVDQTTELVCVHDSARPLVLSGNVKKVLKDAWVHGAAVLGVPVKATIKEASNDSFVTRTLNRQTLWEMQTPQVIKPSLLRKGFEVVHREGLEVTDDVSIVEHLKHPVYITEGSYSNIKVTTPDDILLAERILNQR 319
BLAST of EWM22399.1 vs. NCBI_GenBank
Match: gi|357126250|ref|XP_003564801.1| (PREDICTED: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic [Brachypodium distachyon] >gi|944075470|gb|KQK10954.1| hypothetical protein BRADI_2g57260 [Brachypodium distachyon]) HSP 1 Score: 249.98 bits (637), Expect = 1.913e-78 Identity = 125/243 (51.44%), Postives = 168/243 (69.14%), Query Frame = 0
Query: 67 NRGIFCMRSN----EMITVEGVSVVLLAGGVGKRMKADRPKQFIELLGKPVLLHSLEIFSTLPGVNRIVIVLDKSYRQEF-SFLQEEDPRIVFADPGKERQDSVFNGFSQTLPDASVVCIHDSARPLVSQSAVLASLRDGSVHGAAVLGVPMKATVKESADGEFVLRTMNRSRLWEIQTPQVIKPDILSEAFALVTEKGLEVTDDVSMVEQVGRPVKLTMGEYTNIKLTTPEDIGVAEGFLRE 304
N IF +R++ + + VSV+LL+GG GKRM A+ PKQ+I LLG P+ LHSL F + V +++V D SYR F ++ I FA PGKERQDSVFNG + D+ +VC+HDSARPLVS V L D +VHGAAVLGVP+KAT+KE++ FV++T++R LWE+QTPQV++P++L + F LV GLEVTDDVS+VE + PV +T G YTNIK+TTP+D+ +AE + E
Sbjct: 51 NSAIFAVRADGAQGDAVKERSVSVILLSGGQGKRMGANMPKQYIPLLGTPIALHSLRTFCRMKEVKEVIVVCDPSYRNVFEDSIENLQIPIKFACPGKERQDSVFNGLQEIDRDSELVCVHDSARPLVSSKDVKKVLEDAAVHGAAVLGVPVKATIKEASSDSFVVKTLDRKTLWEMQTPQVMEPNLLKDGFDLVKRDGLEVTDDVSIVEYLKHPVYITEGSYTNIKVTTPDDLLLAERLMNE 293 The following BLAST results are available for this feature:
BLAST of EWM22399.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|