EWM22479.1, cds8250 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22479.1 vs. NCBI_GenBank
Match: gi|585102985|gb|EWM22479.1| (cytochrome c biogenesis protein transmembrane region [Nannochloropsis gaditana]) HSP 1 Score: 890.567 bits (2300), Expect = 0.000e+0 Identity = 449/449 (100.00%), Postives = 449/449 (100.00%), Query Frame = 0
Query: 1 MVCLEIFRVMCKLLTALKSMYMIEDGSQEVFRFPSGQSSGSWPASTESRSLTMESQPPLRNTQIEQHLREWAPHLRMRTLSSVLAGVAGVVLLLCSSAVALPPNHAGSRPSRYQSTFIPLSSSPGLSRTTTPSLTLKPVSSPSSAIRLGMNPTPRRTRNRDVRCSVDVGLALYDIQIWAKQLVDTQLTHLTPVSGAVLYGAGLLTSLSPCALSLVPLTMAYLTDDGTDPARDQRTLLFRAATFTVGLATSLSVLGLSATLAGKLFGSAGAGALGAALPLTASAVAIVMGLNLLDLVSLRLPSFDAALQLERFPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAGLLSGTVTSFIAKRGDGFSWPTPSHPTAPWSAWICQGKMRIGREARGWEAGGRRVSAAGHSLRTCCVRSYAILQRVVI 449
MVCLEIFRVMCKLLTALKSMYMIEDGSQEVFRFPSGQSSGSWPASTESRSLTMESQPPLRNTQIEQHLREWAPHLRMRTLSSVLAGVAGVVLLLCSSAVALPPNHAGSRPSRYQSTFIPLSSSPGLSRTTTPSLTLKPVSSPSSAIRLGMNPTPRRTRNRDVRCSVDVGLALYDIQIWAKQLVDTQLTHLTPVSGAVLYGAGLLTSLSPCALSLVPLTMAYLTDDGTDPARDQRTLLFRAATFTVGLATSLSVLGLSATLAGKLFGSAGAGALGAALPLTASAVAIVMGLNLLDLVSLRLPSFDAALQLERFPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAGLLSGTVTSFIAKRGDGFSWPTPSHPTAPWSAWICQGKMRIGREARGWEAGGRRVSAAGHSLRTCCVRSYAILQRVVI
Sbjct: 1 MVCLEIFRVMCKLLTALKSMYMIEDGSQEVFRFPSGQSSGSWPASTESRSLTMESQPPLRNTQIEQHLREWAPHLRMRTLSSVLAGVAGVVLLLCSSAVALPPNHAGSRPSRYQSTFIPLSSSPGLSRTTTPSLTLKPVSSPSSAIRLGMNPTPRRTRNRDVRCSVDVGLALYDIQIWAKQLVDTQLTHLTPVSGAVLYGAGLLTSLSPCALSLVPLTMAYLTDDGTDPARDQRTLLFRAATFTVGLATSLSVLGLSATLAGKLFGSAGAGALGAALPLTASAVAIVMGLNLLDLVSLRLPSFDAALQLERFPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAGLLSGTVTSFIAKRGDGFSWPTPSHPTAPWSAWICQGKMRIGREARGWEAGGRRVSAAGHSLRTCCVRSYAILQRVVI 449
BLAST of EWM22479.1 vs. NCBI_GenBank
Match: gi|873218443|emb|CEM39549.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 200.29 bits (508), Expect = 2.568e-57 Identity = 123/254 (48.43%), Postives = 171/254 (67.32%), Query Frame = 0
Query: 152 PTPRRTRNRDVRCSV--DVGLALYDIQIWAKQLVDTQLTHLTPVSGAVLYGAGLLTSLSPCALSLVPLTMAYLTDDGT----DPARDQRTLLFRAATFTVGLATSLSVLGLSATLAGK-LFGSAGAGALGAALPLTASAVAIVMGLNLLDLVSLRLPSFDAALQLE--RFPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAGLLSGTVTSFIAKRG--DGFSWPTP 394
P R + +++ SV ++GL ++D+Q A +V QL+HLTPVS AVLY +GL+TSLSPCALSL+PLT+AYL D + DP+R L + F GLAT+LS LGL A+L G LFG +G +P+ AS +A+VMGLN+L+LVS+ P+FD E + P +LQ FL G TSALIA+PCSTPVL ++LG+VA++G+P LGA LLF+Y+LGY++P++ AG SG + + + +G W TP
Sbjct: 24 PVVRPSGRTEMQFSVQDELGLLIFDVQQTAGDIVAYQLSHLTPVSLAVLYLSGLVTSLSPCALSLLPLTIAYLAGDSSTPTDDPSRPPPIPLSSSLMFAAGLATALSSLGLGASLLGMGLFGQT-SGPAERIVPVAASVLAVVMGLNVLNLVSISFPAFDGGELDEGRKLPKALQDFLFGVTSALIATPCSTPVLTALLGYVASTGDPLLGAALLFAYTLGYASPVVAAGTASGRLAQLLTQGEGREGLRWITP 276
BLAST of EWM22479.1 vs. NCBI_GenBank
Match: gi|505040288|ref|WP_015227390.1| (cytochrome C biogenesis protein CcdA [Halothece sp. PCC 7418] >gi|428692224|gb|AFZ45518.1| cytochrome c biogenesis protein transmembrane region [Halothece sp. PCC 7418]) HSP 1 Score: 183.341 bits (464), Expect = 2.008e-51 Identity = 106/228 (46.49%), Postives = 154/228 (67.54%), Query Frame = 0
Query: 168 VGLALYDIQIWAKQLVDTQLTHLTPVSGAVLYGAGLLTSLSPCALSLVPLTMAYLTDDGTDPARDQRTLLFRAATFTVGLATSLSVLGLSATLAGKLFGSAGAGALGAALPLTASAVAIVMGLNLLDLVSLRLPSFDAALQL-ERFPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAGLLSGTVTSFIAKRGDGFSWPTP 394
+ L Y +Q +A QLV QL HL+PVS +++ AGLLTSL+PC LS++P+T+ Y+ T+ D L++++ F +GLAT+L+ LG+ A G+++G G G LP+ SA+AI+MGLNLL++V LR PS + E FPPS++++LLG T L+ASPCSTPVLAS+L +VA+S + LGAGLL SY+ GY PL++AG + ++ F+ R G +W TP
Sbjct: 5 IELFFYQLQQFADQLVSQQLNHLSPVSVGLIFLAGLLTSLTPCMLSMLPITVGYIGSSDTEGRADA---LWKSSWFALGLATTLAGLGIFAAAFGQVYGQIGVG-----LPIFVSAIAILMGLNLLEIVPLRFPSLGGTDWIKEDFPPSVRSYLLGLTFGLVASPCSTPVLASLLAWVASSQDLVLGAGLLLSYTGGYVMPLVIAGTFTASIKKFLEFRRWG-NWITP 223
BLAST of EWM22479.1 vs. NCBI_GenBank
Match: gi|505042398|ref|WP_015229500.1| (cytochrome C biogenesis protein CcdA [Dactylococcopsis salina] >gi|428694353|gb|AFZ50503.1| cytochrome c biogenesis protein [Dactylococcopsis salina PCC 8305]) HSP 1 Score: 182.57 bits (462), Expect = 3.601e-51 Identity = 102/217 (47.00%), Postives = 151/217 (69.59%), Query Frame = 0
Query: 179 AKQLVDTQLTHLTPVSGAVLYGAGLLTSLSPCALSLVPLTMAYLTDDGTDPARDQRTLLFRAATFTVGLATSLSVLGLSATLAGKLFGSAGAGALGAALPLTASAVAIVMGLNLLDLVSLRLPSFDAALQL-ERFPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAGLLSGTVTSFIAKRGDGFSWPTP 394
A QLV QL L+PVS +++ AGLLTSL+PC LS++P+T+ Y+ T+ +D L++++ F +GLAT+L+ LG+ A G+++G G G LP+ SA+AI+MGLNLL+++ LR PSF + + FPPS++++LLG T L+ASPCSTPVLAS+L +VA+S + LGAGLL SY+ GY TPL++AG+ + ++ F+ R G +W TP
Sbjct: 16 ADQLVSQQLNQLSPVSVGIIFVAGLLTSLTPCMLSMLPITVGYIGASETEGRKDA---LWKSSWFALGLATTLAGLGVFAAGFGQVYGQVGVG-----LPIIVSAIAILMGLNLLEIIPLRFPSFGGTQWIKDDFPPSIRSYLLGLTFGLVASPCSTPVLASLLAWVASSQDLILGAGLLLSYTAGYVTPLVIAGIFTASIKKFLEFRRWG-TWITP 223
BLAST of EWM22479.1 vs. NCBI_GenBank
Match: gi|586776260|ref|XP_006857711.1| (cytochrome c-type biogenesis ccda-like chloroplastic protein 2 [Amborella trichopoda] >gi|1173106632|ref|XP_020531225.1| cytochrome c-type biogenesis ccda-like chloroplastic protein 2 [Amborella trichopoda] >gi|548861807|gb|ERN19178.1| hypothetical protein AMTR_s00061p00174500 [Amborella trichopoda]) HSP 1 Score: 184.496 bits (467), Expect = 1.448e-50 Identity = 115/249 (46.18%), Postives = 160/249 (64.26%), Query Frame = 0
Query: 159 NRDVRCSV---DVGLA------LYDIQIWAKQLVDTQLTHLTPVSGAVLYGAGLLTSLSPCALSLVPLTMAYLTDDGTDPARDQRTLLFRAATFTVGLATSLSVLGLSATLAGKLFGSAGAGALGAALPLTASAVAIVMGLNLLDLVSLRLPSF----DAALQLERFPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAGLLSGTVTSFIAKRGDGFSWPTP 394
N D+ ++ D GL LY+ A + V +QLT L+ S AV++GAGL+TSLSPC LS++PLT+ Y+ G+ +R Q ++ + F +GLAT+L++LG++A+LAGK +G G G LPL AS +AI+MGLNLL++V L+LPSF DA FP S+QA+L G T AL ASPCSTPVLA++LG+VAAS +P +G LL +Y+ GY PLLLA + + S ++ R SW P
Sbjct: 90 NHDIWSTLVFADAGLGDWFGSLLYNAGQQANEAVQSQLTALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQ--IIGDSLAFALGLATTLAILGIAASLAGKAYGQIGQG-----LPLAASGLAIIMGLNLLEIVELQLPSFFNDFDARAVAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPVIGGSLLLTYTTGYVAPLLLAASFASALQSLLSFRKFS-SWINP 330
BLAST of EWM22479.1 vs. NCBI_GenBank
Match: gi|504937741|ref|WP_015124843.1| (cytochrome C biogenesis protein CcdA [Synechococcus sp. PCC 6312] >gi|427377348|gb|AFY61300.1| cytochrome c biogenesis protein [Synechococcus sp. PCC 6312]) HSP 1 Score: 179.489 bits (454), Expect = 4.525e-50 Identity = 101/235 (42.98%), Postives = 154/235 (65.53%), Query Frame = 0
Query: 172 LYDIQIWAKQLVDTQLTHLTPVSGAVLYGAGLLTSLSPCALSLVPLTMAYLTDDGTDPARDQRTLLFRAATFTVGLATSLSVLGLSATLAGKLFGSAGAGALGAALPLTASAVAIVMGLNLLDLVSLRLPSFDAALQL-ERFPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAGLLSGTVTSFIAKRGDGFSWPTPSHPTAPWSAWI 405
Y ++ WA Q+V QLT L PVS A+++ AGLLTSL+PC LS++P+T+ Y+ G A ++ ++A F +GLAT+L++LG+ A LAGK++G G G L + S VAI+MGLNLL+ + + LP++ +L ER P L++++LGA+ L+A+PCSTPVLA++L +VAA+ +P +GAGLL +Y++GY PL++AG + ++ +A R WSAWI
Sbjct: 8 FYALEQWANQIVVAQLTDLNPVSIAIIFMAGLLTSLTPCTLSMLPITIGYI---GGYNAENRLQAAKQSAWFALGLATTLAILGIIAALAGKIYGQVGPG-----LTIVVSLVAIIMGLNLLNALPITLPTWPGLEELPERVPKGLRSYVLGASFGLVAAPCSTPVLATLLAWVAANQKPVVGAGLLLAYTVGYVLPLIIAGTFTASIKKLLALR--------------QWSAWI 220
BLAST of EWM22479.1 vs. NCBI_GenBank
Match: gi|703119137|ref|XP_010101791.1| (Cytochrome c-type biogenesis ccda-like chloroplastic protein 2 [Morus notabilis] >gi|587901371|gb|EXB89646.1| Cytochrome c-type biogenesis ccda-like chloroplastic protein 2 [Morus notabilis]) HSP 1 Score: 182.185 bits (461), Expect = 9.637e-50 Identity = 103/218 (47.25%), Postives = 147/218 (67.43%), Query Frame = 0
Query: 172 LYDIQIWAKQLVDTQLTHLTPVSGAVLYGAGLLTSLSPCALSLVPLTMAYLTDDGTDPARDQRTLLFRAATFTVGLATSLSVLGLSATLAGKLFGSAGAGALGAALPLTASAVAIVMGLNLLDLVSLRLPSF----DAALQLERFPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAGLLSGTVTSFIAKR 385
LY A + V QL+ ++ S AV++GAGL+TSLSPC LS++PLT+ Y+ G+ +R + ++ + F++GLAT+L++LG++A+ AGK +G G G LPL AS +A+VMGLNLL+++ LRLPSF DA FP S+QA+L G T AL ASPCSTPVLAS+LG+VA S +P +G LL +Y+ GY PLLLA +G + + +A +
Sbjct: 103 LYSAGQQANEAVQDQLSAVSFSSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAE--VVGNSVAFSLGLATTLAILGIAASFAGKAYGQIGQG-----LPLAASGLAVVMGLNLLEIIELRLPSFFDNFDARAAAANFPSSVQAYLAGLTFALAASPCSTPVLASLLGYVATSKDPVIGGSLLLTYTTGYVAPLLLAASFAGALQARVADK 313
BLAST of EWM22479.1 vs. NCBI_GenBank
Match: gi|593261926|ref|XP_007133142.1| (hypothetical protein PHAVU_011G155100g [Phaseolus vulgaris] >gi|561006142|gb|ESW05136.1| hypothetical protein PHAVU_011G155100g [Phaseolus vulgaris]) HSP 1 Score: 180.259 bits (456), Expect = 4.123e-49 Identity = 111/241 (46.06%), Postives = 154/241 (63.90%), Query Frame = 0
Query: 179 AKQLVDTQLTHLTPVSGAVLYGAGLLTSLSPCALSLVPLTMAYLTDDGTDPARDQRTLLFRAATFTVGLATSLSVLGLSATLAGKLFGSAGAGALGAALPLTASAVAIVMGLNLLDLVSLRLPSF----DAALQLERFPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAGLLSGTVTSFIAKRGDGFSWPTPSHPTAPWSAWI--CQGKMRIG 413
A + V QL+ L+ S AV+YGAGL+TSLSPC LS++PLT+ Y+ G+ +R + ++ + F++GLAT+L+VLG+ A+ AGK +G G G LPL AS +AI+MGLNLL+++ LRLPSF D FP S+QA+L G T AL ASPCSTPVLA++LG+VAAS +P +G LL +Y+ GY +PLLLA +G + S ++ R +SAWI G M +G
Sbjct: 108 ANEAVQDQLSSLSFTSLAVIYGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAE--VVGDSIAFSLGLATTLAVLGVGASFAGKAYGQIGQG-----LPLAASGLAIIMGLNLLEIIELRLPSFFDSFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPVIGGSLLLTYTTGYVSPLLLAASFAGALQSLLSFR--------------KFSAWINPISGAMLLG 327
BLAST of EWM22479.1 vs. NCBI_GenBank
Match: gi|1201321410|gb|OVA20202.1| (Cytochrome c assembly protein [Macleaya cordata]) HSP 1 Score: 181.03 bits (458), Expect = 1.015e-48 Identity = 110/239 (46.03%), Postives = 155/239 (64.85%), Query Frame = 0
Query: 167 DVGLA------LYDIQIWAKQLVDTQLTHLTPVSGAVLYGAGLLTSLSPCALSLVPLTMAYLTDDGTDPARDQRTLLFRAATFTVGLATSLSVLGLSATLAGKLFGSAGAGALGAALPLTASAVAIVMGLNLLDLVSLRLPSF----DAALQLERFPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAGLLSGTVTSFIAKRGDGFS-WPTP 394
D+GL L+ A + V QL+ L+ S AV++GAGL+TSLSPC LS++PLT+ Y+ G+ +R Q ++ + F++GLAT+L++LG++A++AGK +G G G LPL AS +A+VMGLNLL+++ LRLPSF DA FP +QA+L G T AL ASPCSTPVLA++LG+VA S +P +G LL +Y+ GY PLLLA +G + S ++ R FS W P
Sbjct: 174 DIGLGDWFGGLLFSAGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQ--VVGDSLAFSLGLATTLAILGVAASIAGKAYGQIGQG-----LPLAASGLAVVMGLNLLEIIELRLPSFFNNFDARAAAANFPSGVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPIVGGSLLLTYTTGYVAPLLLAASFAGALQSLLSFR--KFSAWINP 403
BLAST of EWM22479.1 vs. NCBI_GenBank
Match: gi|720041161|ref|XP_010268823.1| (PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein [Nelumbo nucifera]) HSP 1 Score: 179.489 bits (454), Expect = 1.358e-48 Identity = 110/248 (44.35%), Postives = 158/248 (63.71%), Query Frame = 0
Query: 158 RNRDVRCSVDVGLA------LYDIQIWAKQLVDTQLTHLTPVSGAVLYGAGLLTSLSPCALSLVPLTMAYLTDDGTDPARDQRTLLFRAATFTVGLATSLSVLGLSATLAGKLFGSAGAGALGAALPLTASAVAIVMGLNLLDLVSLRLPSF----DAALQLERFPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAGLLSGTVTSFIAKRGDGFS-WPTP 394
R + D+GL LY A + V QL+ L+ S AV++GAGL+TSLSPC LS++PLT+ Y+ G+ +++ ++ + F++GLAT+L++LG++A+ AGK +G G G LP+ AS +AIVMGLNLL+++ L+LPSF D+ FP S+QA+L G T AL ASPCSTPVLA++LG+VAAS +P +G LL +Y+ GY PLLLA +G + S ++ R FS W P
Sbjct: 94 RAASISTLADMGLGDWFGGFLYSAGQQANEAVQDQLSTLSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGS--GKNRAKIIGDSVAFSLGLATTLAILGIAASFAGKAYGQIGQG-----LPVAASGLAIVMGLNLLEIIELQLPSFFNNFDSRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPVIGGTLLLTYTTGYVAPLLLAASFAGALQSLLSFR--KFSAWINP 332 The following BLAST results are available for this feature:
BLAST of EWM22479.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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