EWM22534.1, cds8141 (CDS) Nannochloropsis gaditana

Overview
NameEWM22534.1
Unique Namecds8141
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:730223..730675 +
Alignment locationKK037247.1:730874..731141 +
Alignment locationKK037247.1:731327..731613 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22534.1
ProductThioredoxin
Orig transcript idgnl|cribi|Naga_100290g4.9873.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:730223..730675 +
KK037247.1supercontigKK037247.1:730874..731141 +
KK037247.1supercontigKK037247.1:731327..731613 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008150biological_process
Vocabulary: INTERPRO
TermDefinition
IPR012336Thioredoxin-like_fold
Homology
BLAST of EWM22534.1 vs. NCBI_GenBank
Match: gi|585103059|gb|EWM22534.1| (Thioredoxin [Nannochloropsis gaditana])

HSP 1 Score: 689.493 bits (1778), Expect = 0.000e+0
Identity = 335/335 (100.00%), Postives = 335/335 (100.00%), Query Frame = 0
Query:    1 MTIPHRSLLTSSNFKSDSSREQNSQLVCSTDMSENLHGSHRGMYGVQSIMHVRCLCLQLYLSCSSFFSRCFPAGGRIPYPMASIKSPKRSPTASTFASYSGLKNSLTLKLVFLAMCACALVAAVHSPEDDGVDVIGTALRGDHGPRRANIMEPAALAVAAPPVAEVPPGPAQDITPEPPLLFPADAQLQDLTGALVNANEALANRSVGLYFGAGWCSMTRAANPGVAAFLRPRESEGVTLVFVSSDTNAESLNEQQASNLWPFAVPFDSPLRLSLKELYGVWSSLEVGKIPGKRRSAIPTVMVVGKDGTELARLEVGARGISELDRWNYLEWKWE 335
            MTIPHRSLLTSSNFKSDSSREQNSQLVCSTDMSENLHGSHRGMYGVQSIMHVRCLCLQLYLSCSSFFSRCFPAGGRIPYPMASIKSPKRSPTASTFASYSGLKNSLTLKLVFLAMCACALVAAVHSPEDDGVDVIGTALRGDHGPRRANIMEPAALAVAAPPVAEVPPGPAQDITPEPPLLFPADAQLQDLTGALVNANEALANRSVGLYFGAGWCSMTRAANPGVAAFLRPRESEGVTLVFVSSDTNAESLNEQQASNLWPFAVPFDSPLRLSLKELYGVWSSLEVGKIPGKRRSAIPTVMVVGKDGTELARLEVGARGISELDRWNYLEWKWE
Sbjct:    1 MTIPHRSLLTSSNFKSDSSREQNSQLVCSTDMSENLHGSHRGMYGVQSIMHVRCLCLQLYLSCSSFFSRCFPAGGRIPYPMASIKSPKRSPTASTFASYSGLKNSLTLKLVFLAMCACALVAAVHSPEDDGVDVIGTALRGDHGPRRANIMEPAALAVAAPPVAEVPPGPAQDITPEPPLLFPADAQLQDLTGALVNANEALANRSVGLYFGAGWCSMTRAANPGVAAFLRPRESEGVTLVFVSSDTNAESLNEQQASNLWPFAVPFDSPLRLSLKELYGVWSSLEVGKIPGKRRSAIPTVMVVGKDGTELARLEVGARGISELDRWNYLEWKWE 335          
BLAST of EWM22534.1 vs. NCBI_GenBank
Match: gi|553190955|ref|XP_005855299.1| (nucleoredoxin-like protein 2 [Nannochloropsis gaditana CCMP526] >gi|422293755|gb|EKU21055.1| nucleoredoxin-like protein 2 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 515.383 bits (1326), Expect = 0.000e+0
Identity = 253/255 (99.22%), Postives = 255/255 (100.00%), Query Frame = 0
Query:   81 MASIKSPKRSPTASTFASYSGLKNSLTLKLVFLAMCACALVAAVHSPEDDGVDVIGTALRGDHGPRRANIMEPAALAVAAPPVAEVPPGPAQDITPEPPLLFPADAQLQDLTGALVNANEALANRSVGLYFGAGWCSMTRAANPGVAAFLRPRESEGVTLVFVSSDTNAESLNEQQASNLWPFAVPFDSPLRLSLKELYGVWSSLEVGKIPGKRRSAIPTVMVVGKDGTELARLEVGARGISELDRWNYLEWKWE 335
            MASIKSPKRSPTASTFASYSGLKNSLTLKLVFLAMCACALVAAVHSPEDDGVDVIGTALRGDHGPR+ANIMEP+ALAVAAPPVAEVPPGPAQDITPEPPLLFPADAQLQDLTGALVNANEALANRSVGLYFGAGWCSMTRAANPGVAAFLRPRESEGVTLVFVSSDTNAESLNEQQASNLWPFAVPFDSPLRLSLKELYGVWSSLEVGKIPGKRRSAIPTVMVVGKDGTELARLEVGARGISELDRWNYLEWKWE
Sbjct:    1 MASIKSPKRSPTASTFASYSGLKNSLTLKLVFLAMCACALVAAVHSPEDDGVDVIGTALRGDHGPRQANIMEPSALAVAAPPVAEVPPGPAQDITPEPPLLFPADAQLQDLTGALVNANEALANRSVGLYFGAGWCSMTRAANPGVAAFLRPRESEGVTLVFVSSDTNAESLNEQQASNLWPFAVPFDSPLRLSLKELYGVWSSLEVGKIPGKRRSAIPTVMVVGKDGTELARLEVGARGISELDRWNYLEWKWE 255          
BLAST of EWM22534.1 vs. NCBI_GenBank
Match: gi|551659865|ref|XP_005832701.1| (hypothetical protein GUITHDRAFT_108595 [Guillardia theta CCMP2712] >gi|428176838|gb|EKX45721.1| hypothetical protein GUITHDRAFT_108595 [Guillardia theta CCMP2712])

HSP 1 Score: 96.6709 bits (239), Expect = 1.998e-20
Identity = 54/182 (29.67%), Postives = 88/182 (48.35%), Query Frame = 0
Query:  153 PAALAVAAPPVAEVPPGPAQDITPEPPLLFPADAQLQDLTGALVNANEALANRSVGLYFGAGWCSMTRAANPGVAAFLRPRESEG------VTLVFVSSDTNAESLNEQQASNLWPFAVPFDSPLRLSLKELYGVWSSLEVGKIPGKRRSAIPTVMVVGKDGTELARLEVGARGISELDRWN 328
            PA +A+A   +A    G    +          DA + D  G  +   +A   R+VGLYF   WC M R+  P +  F   +  +        T+VFVSSD + E+ +    +      + +DSPLR  LK+ + +W  +E   +   RRS IP ++V+G+DG E+  +   ++G+  L+ WN
Sbjct:    5 PAFMALACLSMAAASTGGEGSMNLH-------DAMVVDQDGHKMRLEDAAKGRTVGLYFAGEWCPMCRSFTPKLKEFFNEKAQDKQTGNQRATIVFVSSDFSKEAADSHFRNQGNWLYLDYDSPLRQQLKQKFRIWGGMESSSLGFDRRSGIPGMVVIGRDGNEITYMNTESKGVKALEAWN 179          
BLAST of EWM22534.1 vs. NCBI_GenBank
Match: gi|873236942|emb|CEL98253.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 92.0485 bits (227), Expect = 2.491e-18
Identity = 50/139 (35.97%), Postives = 78/139 (56.12%), Query Frame = 0
Query:  201 ALANRSVGLYFGAGWCSMTRAANPGVAAFLRPRESEG--VTLVFVSSD-TNAESLNEQQASNLWPFAVPFDSPLRLSLKELYGVWSSLEVGKIPG-KRRSAIPTVMVVGKDGTELARLEVGARGISELDRWNYLEWKWE 335
            +L  +SV LYF AGWC M ++  P + +F +   ++G  + ++FVSSD  NA      +AS+     + +D PL   LK  +GVW+  E  K  G  RR+ +P V+V+G DG EL  ++   +G   LD+W++    WE
Sbjct:   88 SLQGKSVALYFAAGWCPMCQSFTPVLRSFYQRVNTDGQKIEVIFVSSDGDNASQAAHMEASHGPWLRIDYDDPLTDKLKRQHGVWARRESHKFEGMTRRAGVPGVVVIGSDGHELQFMDTERKGGGALDQWDFEHKLWE 226          
BLAST of EWM22534.1 vs. NCBI_GenBank
Match: gi|1072238994|gb|OEU23721.1| (putative nucleoredoxin [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 82.0333 bits (201), Expect = 3.600e-15
Identity = 45/135 (33.33%), Postives = 75/135 (55.56%), Query Frame = 0
Query:  195 LVNANEALANRSVGLYFGAGWCSMTRAANPGVAAFLRPRESEG--VTLVFVSSDTNAESLNEQQASNLWPFAVPFDSPLRLSLKELYGVWSSLEVGKIPGKRRSAIPTVMVVGKDGTELARLEVGARGISELDRW 327
            +++ +E L ++ V LYF AGWC M  +  P + +F +  +  G  + L+++SSD N E+ N ++AS L  + VPF       LK+ Y +W+  E  +    RRS +P ++V+ K G ELA +   ++G   L  W
Sbjct:   29 VIDLDEKLKDKRVALYFTAGWCPMCTSFEPALMSFQQNAKDAGKPIELIYISSDRNEET-NIKRASQLNMYTVPFGDQTA-ELKKKYKIWAGSETFQFGFGRRSGVPAIVVLDKTGEELAFVAAESQGAKALATW 161          
BLAST of EWM22534.1 vs. NCBI_GenBank
Match: gi|1072238993|gb|OEU23720.1| (putative nucleoredoxin [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 82.4185 bits (202), Expect = 3.616e-15
Identity = 45/135 (33.33%), Postives = 75/135 (55.56%), Query Frame = 0
Query:  195 LVNANEALANRSVGLYFGAGWCSMTRAANPGVAAFLRPRESEG--VTLVFVSSDTNAESLNEQQASNLWPFAVPFDSPLRLSLKELYGVWSSLEVGKIPGKRRSAIPTVMVVGKDGTELARLEVGARGISELDRW 327
            +++ +E L ++ V LYF AGWC M  +  P + +F +  +  G  + L+++SSD N E+ N ++AS L  + VPF       LK+ Y +W+  E  +    RRS +P ++V+ K G ELA +   ++G   L  W
Sbjct:   35 VIDLDEKLKDKRVALYFTAGWCPMCTSFEPALMSFQQNAKDAGKPIELIYISSDRNEET-NIKRASQLNMYTVPFGDQT-AELKKKYKIWAGSETFQFGFGRRSGVPAIVVLDKTGEELAFVAAESQGAKALATW 167          
BLAST of EWM22534.1 vs. NCBI_GenBank
Match: gi|1072238992|gb|OEU23719.1| (putative nucleoredoxin [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 82.8037 bits (203), Expect = 4.206e-15
Identity = 45/135 (33.33%), Postives = 75/135 (55.56%), Query Frame = 0
Query:  195 LVNANEALANRSVGLYFGAGWCSMTRAANPGVAAFLRPRESEG--VTLVFVSSDTNAESLNEQQASNLWPFAVPFDSPLRLSLKELYGVWSSLEVGKIPGKRRSAIPTVMVVGKDGTELARLEVGARGISELDRW 327
            +++ +E L ++ V LYF AGWC M  +  P + +F +  +  G  + L+++SSD N E+ N ++AS L  + VPF       LK+ Y +W+  E  +    RRS +P ++V+ K G ELA +   ++G   L  W
Sbjct:   57 VIDLDEKLKDKRVALYFTAGWCPMCTSFEPALMSFQQNAKDAGKPIELIYISSDRNEET-NIKRASQLNMYTVPFGDQ-TAELKKKYKIWAGSETFQFGFGRRSGVPAIVVLDKTGEELAFVAAESQGAKALATW 189          
BLAST of EWM22534.1 vs. NCBI_GenBank
Match: gi|551573369|ref|XP_005772491.1| (hypothetical protein EMIHUDRAFT_102068 [Emiliania huxleyi CCMP1516] >gi|551604952|ref|XP_005783922.1| hypothetical protein EMIHUDRAFT_231900 [Emiliania huxleyi CCMP1516] >gi|485623931|gb|EOD20062.1| hypothetical protein EMIHUDRAFT_102068 [Emiliania huxleyi CCMP1516] >gi|485636948|gb|EOD31493.1| hypothetical protein EMIHUDRAFT_231900 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 75.8702 bits (185), Expect = 1.041e-12
Identity = 47/133 (35.34%), Postives = 74/133 (55.64%), Query Frame = 0
Query:  199 NEALANRSVGLYFGAGWCSMTRAANPGVAAFLRPRESEG--VTLVFVSSD-TNAESLNEQQASNLWPFAVPFDSPLRLSLKELYGVWSSLEVGKI-PGKRRSAIPTVMVVGKDGTELARLEVGARGISELDRW 327
             + L  + V LYF AGWC M  +  P +  FL+  E  G   +L++V SD T AE+L  ++A  L   +VPF+     +LK+ + +W+  E  K+ P  RRS +P ++V+  +G ELA +   A+G+  L  W
Sbjct:   51 TQQLGGKRVALYFSAGWCPMCTSFEPSLQQFLQASEDSGKPCSLIYVPSDRTEAEAL--RRAKGLGLLSVPFEEA--DALKKQFKIWAGAESMKLGPFGRRSGVPALVVLSSEGEELAFVPAEAQGVRALQSW 179          
BLAST of EWM22534.1 vs. NCBI_GenBank
Match: gi|975099116|ref|XP_015264592.1| (PREDICTED: nucleoredoxin-like protein 2 [Gekko japonicus])

HSP 1 Score: 72.7886 bits (177), Expect = 6.141e-12
Identity = 46/150 (30.67%), Postives = 71/150 (47.33%), Query Frame = 0
Query:  188 LQDLTGALVNANEALANRSVGLYFGAGWCSMTRAANPGVAAFLRPRESEG-----VTLVFVSSDTNAESLNE--QQASNLWPFAVPFDSPLRLSLKELYGVWSSLEVGKIPGKRRSAIPTVMVVGKDG---TELARLEVGARGISELDRW 327
            L +  G LV+  EAL N+ VGLYF A WCS+ R   P +  F      E        +VF+SSD ++E + +  Q+    W  A+PF  P +  LK+ Y +              +AIP +++V + G   T+  R  +  RG++    W
Sbjct:   10 LMNKDGHLVDPEEALQNKIVGLYFSAAWCSLCREFTPTLCDFYSELVEEAPSPAPFEIVFISSDRSSEEMVDYMQETHGDW-LALPFHDPFKHELKKKYNI--------------TAIPKLVIVKQTGEVITDKGRKHIRERGLNCFRNW 144          
BLAST of EWM22534.1 vs. NCBI_GenBank
Match: gi|1129167837|gb|OLP78913.1| (putative nucleoredoxin 1 [Symbiodinium microadriaticum])

HSP 1 Score: 73.9442 bits (180), Expect = 4.036e-11
Identity = 46/143 (32.17%), Postives = 73/143 (51.05%), Query Frame = 0
Query:  188 LQDLTGALVNANEALANRSVGLYFGAGWCSMTRAANPGVAAFLRPRESEGVTLVFVSSDTNAESLNEQQASNLWPF-AVPFDSPLRLSLKELYGVWSSLEVGKIPGKRRSAIPTVMVVGKDGTELARLEVGARGISELDRWNY 329
            L D  G  V+ + +L  +SV LYF   WC M  A  P +  F++    + V  VFVSSD   E  ++ ++     F +VPF S ++ SLK  + +W   E+ K  G RR  IP ++V+   G E   L+  ++G + L   ++
Sbjct:  121 LLDAEGKEVDGS-SLEGKSVALYFAGEWCPMCTAFTPVLTEFMKDVGDKAV--VFVSSDFTKEEYDQHRSHLPSQFLSVPFGSEMQDSLKRKFHLWGGREIPKYGGDRRGGIPALVVITPGGEEQKYLDAESKGGAALKHRHH 260          
The following BLAST results are available for this feature:
BLAST of EWM22534.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103059|gb|EWM22534.1|0.000e+0100.00Thioredoxin [Nannochloropsis gaditana][more]
gi|553190955|ref|XP_005855299.1|0.000e+099.22nucleoredoxin-like protein 2 [Nannochloropsis gadi... [more]
gi|551659865|ref|XP_005832701.1|1.998e-2029.67hypothetical protein GUITHDRAFT_108595 [Guillardia... [more]
gi|873236942|emb|CEL98253.1|2.491e-1835.97unnamed protein product [Vitrella brassicaformis C... [more]
gi|1072238994|gb|OEU23721.1|3.600e-1533.33putative nucleoredoxin [Fragilariopsis cylindrus C... [more]
gi|1072238993|gb|OEU23720.1|3.616e-1533.33putative nucleoredoxin [Fragilariopsis cylindrus C... [more]
gi|1072238992|gb|OEU23719.1|4.206e-1533.33putative nucleoredoxin [Fragilariopsis cylindrus C... [more]
gi|551573369|ref|XP_005772491.1|1.041e-1235.34hypothetical protein EMIHUDRAFT_102068 [Emiliania ... [more]
gi|975099116|ref|XP_015264592.1|6.141e-1230.67PREDICTED: nucleoredoxin-like protein 2 [Gekko jap... [more]
gi|1129167837|gb|OLP78913.1|4.036e-1132.17putative nucleoredoxin 1 [Symbiodinium microadriat... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8165rna8165Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications