EWM29847.1, cds813 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29847.1 vs. NCBI_GenBank
Match: gi|585112428|gb|EWM29847.1| (RNA helicase, DEAD-box type [Nannochloropsis gaditana]) HSP 1 Score: 1298.88 bits (3360), Expect = 0.000e+0 Identity = 638/638 (100.00%), Postives = 638/638 (100.00%), Query Frame = 0 Query: 1 MRRVFHEGTTGGEGIASALPNTATTASRAIHFQSRLRLAFRTTPSICALLLAMPLLLSPHWTRSVCVVSAFHLRPSTASKVSRGVGRSREVLRMMGAFGGISSQPFSTPAIPSKTTSRSGDENAACDLAEFRRLGLGEETLEGLRKLGIKEPSVIQRLAIPAALKGDDVAFSASTGSGKTLAYLLPIMQELKWQEAVEGKERQTCRPRALILVPTRELVTQVLEVIKSLSHVIKLSSCGLHGGEDFGVQRRRLGGMVDLVVASPGRLLQHYEKGHVFFSQVTHVVVDEMDTMLKDGFGPDLKRLMVPLEAKSKREKVQYLMATATLTPAVKRLMAEEGNFPKTRFLQSEDAHKSLPTMRHIMLDTKGGDKVQLLLDVVSQGRQNGERAMIFCNTVQSCRAAEHALRELALPSACYHGDMRSEERAAALEKFKSGEVSFLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDSLSARKRDYESGGKLSGLSSGKMGASPSSKGNRHAKYVANRQRSASGRAGSIEGSPEKGARGVRRAPSAPSGAQGPSRRRGRGDSAVAGGEDADVRWLHPCHTDGISTSVTKIIGIMLSLLLIFLIC 638 MRRVFHEGTTGGEGIASALPNTATTASRAIHFQSRLRLAFRTTPSICALLLAMPLLLSPHWTRSVCVVSAFHLRPSTASKVSRGVGRSREVLRMMGAFGGISSQPFSTPAIPSKTTSRSGDENAACDLAEFRRLGLGEETLEGLRKLGIKEPSVIQRLAIPAALKGDDVAFSASTGSGKTLAYLLPIMQELKWQEAVEGKERQTCRPRALILVPTRELVTQVLEVIKSLSHVIKLSSCGLHGGEDFGVQRRRLGGMVDLVVASPGRLLQHYEKGHVFFSQVTHVVVDEMDTMLKDGFGPDLKRLMVPLEAKSKREKVQYLMATATLTPAVKRLMAEEGNFPKTRFLQSEDAHKSLPTMRHIMLDTKGGDKVQLLLDVVSQGRQNGERAMIFCNTVQSCRAAEHALRELALPSACYHGDMRSEERAAALEKFKSGEVSFLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDSLSARKRDYESGGKLSGLSSGKMGASPSSKGNRHAKYVANRQRSASGRAGSIEGSPEKGARGVRRAPSAPSGAQGPSRRRGRGDSAVAGGEDADVRWLHPCHTDGISTSVTKIIGIMLSLLLIFLIC Sbjct: 1 MRRVFHEGTTGGEGIASALPNTATTASRAIHFQSRLRLAFRTTPSICALLLAMPLLLSPHWTRSVCVVSAFHLRPSTASKVSRGVGRSREVLRMMGAFGGISSQPFSTPAIPSKTTSRSGDENAACDLAEFRRLGLGEETLEGLRKLGIKEPSVIQRLAIPAALKGDDVAFSASTGSGKTLAYLLPIMQELKWQEAVEGKERQTCRPRALILVPTRELVTQVLEVIKSLSHVIKLSSCGLHGGEDFGVQRRRLGGMVDLVVASPGRLLQHYEKGHVFFSQVTHVVVDEMDTMLKDGFGPDLKRLMVPLEAKSKREKVQYLMATATLTPAVKRLMAEEGNFPKTRFLQSEDAHKSLPTMRHIMLDTKGGDKVQLLLDVVSQGRQNGERAMIFCNTVQSCRAAEHALRELALPSACYHGDMRSEERAAALEKFKSGEVSFLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDSLSARKRDYESGGKLSGLSSGKMGASPSSKGNRHAKYVANRQRSASGRAGSIEGSPEKGARGVRRAPSAPSGAQGPSRRRGRGDSAVAGGEDADVRWLHPCHTDGISTSVTKIIGIMLSLLLIFLIC 638
BLAST of EWM29847.1 vs. NCBI_GenBank
Match: gi|298711833|emb|CBJ32858.1| (DEAD box helicase [Ectocarpus siliculosus]) HSP 1 Score: 472.626 bits (1215), Expect = 3.578e-158 Identity = 238/450 (52.89%), Postives = 324/450 (72.00%), Query Frame = 0 Query: 101 ISSQPFSTPAIPSKTTSRSGDENAACDLAEFRRLGLGEETLEGLRKLGIKEPSVIQRLAIPAALKGDDVAFSASTGSGKTLAYLLPIMQELKWQEAVEGKE----RQTCRPRALILVPTRELVTQVLEVIKSLSHVIKLSSCGLHGGEDFGVQRRRLGGMVDLVVASPGRLLQHYEKGHVFFSQVTHVVVDEMDTMLKDGFGPDLKRLMVPLEAK-SKREKVQYLMATATLTPAVKRLMAEEGNFPKTRFLQSEDAHKSLPTMRHIMLDTKGGDKVQLLLDVVSQGRQNGERAMIFCNTVQSCRAAEHALRELALPSACYHGDMRSEERAAALEKFKSGEVSFLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDSLSARKRDYESGGKLSGLSSGKMGASPSSKGNRH 545 +S +PF P E + +F LGL ++ ++ + + G PS IQR AIP L G ++ F+ASTGSGKTLAYL+P++Q+LK +EA + RQT RPRA++LVPTREL QVLEV K LS K SSCG+ GGED+G QR+RL G VD+VV +PGRLL+H+E G+ F S+ +VVVDE+DTML GF D+++L PL A ++R+ Q++ TATLT AV++L+ E+G++ K R +++ D H +LP++RH+M+D KG DK+ L+D+ Q ++ +R ++FCNTV+SCRAAE LRE+ + + YHG++ S+ER++ LE+FK+G+ +LVCTDIASRGLDMP V+HVVMFDFPLNPI+YLHRSGRTARMGAKG+VTSLL KRD VLA+A++ AV GLPLD LS+R+ DY +GGKL L G+ G S KG+ H Sbjct: 2 VSDRPFRGP------------EADVIEEMDFTGLGLLDDLVDAMEEFGFDSPSKIQRKAIPQILNGGNIVFAASTGSGKTLAYLMPLIQQLKVEEAQAEEGGESIRQTKRPRAIVLVPTRELAMQVLEVAKRLSRSCKFSSCGVVGGEDYGKQRQRLAGTVDIVVGTPGRLLKHHEAGNFFMSKANYVVVDEVDTMLTQGFAADIEKLNRPLLANPNRRDMAQFIFVTATLTKAVRKLLGEDGDYSKVRQVETRDVHHTLPSLRHVMIDIKGRDKMSALIDIAQQHLKDFKRTLVFCNTVKSCRAAEFGLREVDVKALSYHGEVPSDERSSNLERFKAGQAKYLVCTDIASRGLDMPDVDHVVMFDFPLNPIDYLHRSGRTARMGAKGRVTSLLAKRDLVLAAAIEQAVQSGLPLDELSSRRTDYATGGKLGPL-FGRKGKV-SVKGSHH 437
BLAST of EWM29847.1 vs. NCBI_GenBank
Match: gi|873232203|emb|CEM06502.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 409.838 bits (1052), Expect = 9.935e-125 Identity = 214/446 (47.98%), Postives = 304/446 (68.16%), Query Frame = 0 Query: 128 LAEFRRLGLGEETLEGLRK-LGIKEPSVIQRLAIPAALKGDDVAFSASTGSGKTLAYLLPIMQELKWQEAVEGKE-RQTCRPRALILVPTRELVTQVLEVIKSLSHVIKLSSCGLHGGEDFGVQRRRLGGMVDLVVASPGRLLQHYEKGHVFFSQVTHVVVDEMDTMLKDGFGPDLKRLMVPLEAKSKREKVQYLMATATLTPAVKRLMAEEGNFPKTRFLQSEDAHKSLPTMRHIMLDTKGGDKVQLLLDVVS-QGRQ------NGER---------AMIFCNTVQSCRAAEHALRELALPSACYHGDMRSEERAAALEKFKSGEVSFLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDSLSARKRDYESGGKLSGLS-SGKMGASPSSKGNRHAKYVANRQR 554 + ++RRLGL E G LG EP+ IQRLAIP L G ++ F+A TGSGKTLAYLLP+MQ LK +E ++G+ R+ RPRALIL PTREL QVLEV++ S + KLSSC + GG+ F Q+R L ++D+VV +PGR+L H++K ++ S+V++VV+DE+DTML GFGPD+ +L+ PL + E+ Q + ATATLT AV+RL+ +E + P R++++ HKSLP +R+ M+DTKG DK+ L +++ +G Q +G+R ++FCNTV SCRA +HA++E S YHG++ E+R A LE F+ G+V +LVCTD+A+RGLD+ V+ VVMFDFPLNPI+++HR+GRT R G+KG V LL +RD+VLA+ VQ A+ G PL LS+ ++DYE GG+L LS +G G + + K + +R R Sbjct: 843 MLKWRRLGLEESIARGTASMLGDVEPTAIQRLAIPQVLSGGNIVFAAETGSGKTLAYLLPMMQHLKSEE-LDGRSLRRPKRPRALILSPTRELSQQVLEVLRGSSQLAKLSSCSVIGGDSFAKQKRDLSKILDVVVGTPGRVLFHWDKSNLALSEVSYVVIDEVDTMLMQGFGPDINKLLQPLITRPDTEQPQLVFATATLTKAVRRLLDQE-DLPAVRYVEAPGLHKSLPNVRYEMIDTKGEDKLDALRELLKVRGPQRPAEGGDGQRGAGEVYRKSTLVFCNTVNSCRACQHAIQEAGFTSLAYHGEVPQEQRKANLEAFRHGQVPYLVCTDLAARGLDIAQVDQVVMFDFPLNPIDFIHRAGRTGRAGSKGSVLCLLQRRDRVLATGVQRAIRLGRPLSDLSSSRKDYEKGGRLEQLSQAGGFGIRKAERDLSRPKKLVDRAR 1286
BLAST of EWM29847.1 vs. NCBI_GenBank
Match: gi|219126769|ref|XP_002183622.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404859|gb|EEC44804.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 366.696 bits (940), Expect = 2.963e-116 Identity = 206/496 (41.53%), Postives = 295/496 (59.48%), Query Frame = 0 Query: 102 SSQPFSTP-AIPSKTTSRSGDENAACDLAEFRRLGLGEETLEGLRKLGIKEPSVIQRLAIPAALKG--DDVAFSASTGSGKTLAYLLPIMQELKWQEAVEGKERQTCRPRALILVPTRELVTQVLEVIKSLSHVIKLSSCGLHGGEDFGVQRRRLGGMVDLVVASPGRLLQHYEKGHVFFSQVTHVVVDEMDTMLKDGFGPDLKRLMVP----------------LEAKSKREKVQYLMATATLTPAVKRLMAEEGN--------------------------FPKTRFLQSEDAHKSLPTMRHIMLDTKGGDKVQLLLDVVSQGRQNGERA----------MIFCNTVQSCRAAEHALRELALPSACYHGDMRSEERAAALEKFKSG-----------EVSFLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTAR-----MGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDSLSARKRDYESGGKL 526 S PF P P + ++ A +L + +LGL E +E + +L ++ P+ +Q+LAIP LK +AF A+TGSGKTLAY LP++Q LK E ER+ RPR LILVPTRELV Q+ VIKS+SH IKLSSC + GGED+GVQRR+L +D+VVA+PGRL +H++ ++F + H+VVDEMDTML+ GF +L++L+ P L+AK+ R ++ +AT+T +++++ + N P+T+ L++ HK++P ++ + +D DK+ LL+D+VS G A MIFCNT SCRAA+ AL E + S YHGD+ S R+ L++F++ E LVCTD+A+RGLD+P V+H+VMFDFPLN ++YLHRSGRTAR G+VT+L++KRDKVLA+A++ AV +G LD LS+RK DY G +L Sbjct: 4 SRAPFRMPRDSPDDSVPQAA---AKTNLLAWNQLGLWTELVEAMARLELQTPTPVQQLAIPELLKEPPQHLAFLAATGSGKTLAYALPLLQMLKQGEVFADYERRPKRPRLLILVPTRELVVQITSVIKSVSHSIKLSSCSITGGEDYGVQRRQLNRPIDVVVATPGRLTKHWKDSNLFLGSLEHIVVDEMDTMLEQGFYRELRQLLYPVLYHKQADQEINVEQDLDAKAPR----IVLTSATMTQQIQKIIGDSDNKKNLVNAKRHHRKVEDAGFQVKVPMVLPRTKVLKAAGLHKTVPRLQQVFVDVGATDKLSLLVDIVSSGGSGAAVAASLTDQQALTMIFCNTAASCRAAQFALSEARIESLAYHGDLNSAMRSENLKRFRAAGKKNCDNALAEEPRVLVCTDLAARGLDVPQVDHIVMFDFPLNALDYLHRSGRTARGVGGDRTGNGRVTALISKRDKVLANAIEQAVLRGDTLDGLSSRKSDYLPGARL 492
BLAST of EWM29847.1 vs. NCBI_GenBank
Match: gi|1210520414|dbj|GAX20845.1| (hypothetical protein FisN_7Hh160 [Fistulifera solaris]) HSP 1 Score: 353.214 bits (905), Expect = 1.413e-110 Identity = 196/508 (38.58%), Postives = 304/508 (59.84%), Query Frame = 0 Query: 98 FGGISSQPFSTPAIPSKTTSRSGDENAACDLAEFRRLGLGEETLEGLR-KLGIKEPSVIQRLAIPAALKGDD-VAFSASTGSGKTLAYLLPIMQELKWQEAVEGKERQTCRPRALILVPTRELVTQVLEVIKSLSHVIKLSSC-GLHG-GEDFGVQRRRLGGMVDLVVASPGRLLQHYEKGHVFFSQVTHVVVDEMDTMLKDGFGPDLKRLMVPLEAKSKR-------------EKVQYLMATATLTPAVKRLMAEEG------------------------NFPKTRFLQSEDAHKSLPTMRHIMLDTKGGDKVQLLLDVVSQGRQNGERAMIFCNTVQSCRAAEHALRELALPSACYHGDMRSEERAAALEKFKSGEVS-FLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDSLSARKRDY----ESGGKLSGLSSGKMGASP--SSKGNRHAKYVANRQRSAS 557 F + FS P +S +E + LGL + +R +LG P+ +Q+LAIPA LK D V+F A+TGSGKTLAY LP++Q K + ER + RPR +IL PTRELV Q+ ++K + H +KLS GL+G + +G QR+ L +D+VVA+PGRLL+H++ G+++ S+V H+V+DEMDT+++ GF DL+ L+ P+ + + + + +AT+T A+++++ ++ PK + L+++ H+++P ++ + +D G DK+ LLLD+++ Q R M+FCNT SCRA + AL E+++PS YHG++ S R L+ F+S + + LVCTD+A+RGLD+P V+HVV+FDFPLN ++YLHR+GRTAR G KGKVT+L+ KRDKVLA+A++ AV G P+D LS+RK DY S +G ++G S ++G+ + VA +R++S Sbjct: 53 FATNDASAFSKSRAPFTNPEQSQEETDGGKSVTWNSLGLWPLLSDFVRDELGFTSPTPVQKLAIPAVLKQKDHVSFLAATGSGKTLAYALPLLQLCKLHDVSTDGERPSKRPRLIILAPTRELVVQITGIVKQICHGLKLSCAGGLYGSSKSYGRQRQDLDRPIDIVVATPGRLLKHWKDGNIYLSRVQHIVLDEMDTIVEQGFVGDLRELLYPIMYHKQAGQKGIDPATDLQVDAPRLVFTSATMTQAIQKILGDDELVGAKKHHQTNTAAKPSAPNQPLLLLPKMKVLKAKGLHQTVPHLQQVFVDVGGSDKINLLLDLLAS--QRSARTMVFCNTAASCRAVQFALSEVSVPSLAYHGELNSAARLENLKLFRSSDQNQVLVCTDLAARGLDIPTVDHVVLFDFPLNALDYLHRTGRTARQGQKGKVTALVAKRDKVLANAIERAVTSGQPIDGLSSRKSDYAQQQTSPSTKAGRGPSRLGPSSRGGARGSSRPRTVATNKRTSS 558
BLAST of EWM29847.1 vs. NCBI_GenBank
Match: gi|1210529684|dbj|GAX11778.1| (hypothetical protein FisN_7Lh160 [Fistulifera solaris]) HSP 1 Score: 352.443 bits (903), Expect = 1.798e-110 Identity = 201/503 (39.96%), Postives = 305/503 (60.64%), Query Frame = 0 Query: 102 SSQPFSTPAIPSKTTSRSGDENAACDLAEFRRLGLGEETLEGLR-KLGIKEPSVIQRLAIPAALKGDD-VAFSASTGSGKTLAYLLPIMQELKWQEAVEGKERQTCRPRALILVPTRELVTQVLEVIKSLSHVIKLSSC-GLHG-GEDFGVQRRRLGGMVDLVVASPGRLLQHYEKGHVFFSQVTHVVVDEMDTMLKDGFGPDLKRLMVPL------------EAKSKREKVQYLMAT-ATLTPAVKRLMAE----------EGN--------------FPKTRFLQSEDAHKSLPTMRHIMLDTKGGDKVQLLLDVVSQGRQNGERAMIFCNTVQSCRAAEHALRELALPSACYHGDMRSEERAAALEKFKSGEVS-FLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDSLSARKRDY-ESGGKLSGLSSGKMGASPSSKG----NRHAKYVANRQRSAS 557 S PF+ P + S ++ + LGL + +R +LG P+ +Q+LAIPA LK D V+F A+TGSGKTLAY LP++Q K Q+ ER + RPR +IL PTRELV Q+ ++K + H +KLS GL+G + +G QR+ L +D+VVA+PGRLL+H++ G+++ S+V H+V+DEMDT+++ GF DL+ L+ P+ A +E L+ T AT+T A+++++ + + N PK + L+++ H+++P ++ + +D G +K+ LLLD+++ Q R M+FCNT SCRA + AL E+++PS YHG++ S R L+ F+S + S LVCTD+A+RGLD+P V+HVV+FDFPLN ++YLHR+GRTAR G KGKVT+L+ KRDKVLA+A++ AV G P+D LS+RK DY + + G PSS+G + + VA +R++S Sbjct: 56 SRAPFTNPKL-------SQEDTDGGKTVTWNSLGLWPHLSDFVRDELGFASPTPVQKLAIPAVLKQKDHVSFLAATGSGKTLAYALPLLQLCKLQDVSMDGERPSKRPRLIILAPTRELVVQITGIVKQICHGLKLSCAGGLYGSSKSYGRQRQDLDRPIDIVVATPGRLLKHWKDGNIYLSRVQHIVLDEMDTIVEQGFVGDLRELLYPIMYHKQAGQKGIDPATDLQEDAPRLVFTSATMTQAIQKILGDDELVGAKKHHQTNSAAKPSAPNQPLLLLPKMKVLKAKGLHQTVPHLQQVFVDVGGSNKINLLLDLLAS--QKSARTMVFCNTAASCRAVQFALSEVSVPSLAYHGELNSAARLENLKLFRSSDQSQVLVCTDLAARGLDIPTVDHVVLFDFPLNALDYLHRTGRTARQGQKGKVTALVAKRDKVLANAIERAVTSGQPIDGLSSRKSDYAQQTSPSTKPGRGPSRPGPSSRGGARRSSRPRTVATNKRTSS 549
BLAST of EWM29847.1 vs. NCBI_GenBank
Match: gi|1026767671|gb|OAE27937.1| (hypothetical protein AXG93_3309s1340 [Marchantia polymorpha subsp. ruderalis]) HSP 1 Score: 350.903 bits (899), Expect = 3.412e-109 Identity = 190/439 (43.28%), Postives = 272/439 (61.96%), Query Frame = 0 Query: 89 REVLRMMGAFGGI--SSQPFSTPAIPSKTTSRSGDENAACDLAEFRRLGLGEETLEGLRKLGIKEPSVIQRLAIPAALKGDDVAFSASTGSGKTLAYLLPIMQELKWQEAVEGKERQTCRPRALILVPTRELVTQVLEVIKSLSHVIKLSSCGLHGGEDFGVQRRRLGGMVDLVVASPGRLLQHYEKGHVFFSQVTHVVVDEMDTMLKDGFGPDLKRLMVPLEAKSKR---EKVQYLMATATLTPAVKRLMAEEGNFPKTRFLQSEDAHKSLPTMRHIMLDTKGG-DKVQLLLDVVSQGRQNGERAMIFCNTVQSCRAAEHALRELALPSACYHGDMRSEERAAALEKFK--SGEVSF--LVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDSLSARK 517 R+V R G G S++P STP S F +LGL +E + + +LGI +P+ +Q L IPA G+ V ++ TGSGKTLAY+LPI+Q L+ EA GK + RPRA++L PTREL QV V KSL H + + + GG Q L VD+VV +PGRLL H ++GH+ + + +V +DE DTM GFGP++++ + PL +S + Q ++ TAT+T AV++++ EE FP R + + HK + + RH L G +K++ L V+ G R M+FCNT+ SCRA +H LRE + + YHG++ +EER L KFK +G SF LVCTD+A+RGLD+ V+HV+MFDFPLNP++YLHR+GRTARMGAKGKVTSL+TKRD LA ++ A+++G L++L++ + Sbjct: 82 RDVPRPPGRLSGKEESAKPVSTPLAQS-----------------FEQLGLSDELMSAVIELGISKPTEVQSLGIPAVSNGESVVLASHTGSGKTLAYMLPIVQALRRDEAESGKATRARRPRAVVLCPTRELAEQVFHVAKSLCHHARFRAAMIGGGLKMKPQEDILNSAVDMVVGTPGRLLMHVKEGHMAYGDIKYVALDEADTMFDRGFGPEVRKFLGPLRNRSSQPGGTGFQTVLVTATITKAVQKVLDEE--FPGIRHIHTSTLHKKVSSARHDFLKLSGTENKLEALQQVLEPSLAKGNRVMVFCNTLNSCRAIDHFLRENGIQTVNYHGEIPAEERVENLNKFKEETGARSFPALVCTDLAARGLDL-VVDHVIMFDFPLNPVDYLHRTGRTARMGAKGKVTSLVTKRDSTLAGQIEDAMSRGESLEALTSSR 500
BLAST of EWM29847.1 vs. NCBI_GenBank
Match: gi|1025330464|ref|XP_016506152.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Nicotiana tabacum]) HSP 1 Score: 346.665 bits (888), Expect = 3.031e-107 Identity = 181/397 (45.59%), Postives = 260/397 (65.49%), Query Frame = 0 Query: 131 FRRLGLGEETLEGLRKLGIKEPSVIQRLAIPAALKGDDVAFSASTGSGKTLAYLLPIMQELKWQEAVEGKERQTCRPRALILVPTRELVTQVLEVIKSLSHVIKLSSCGLHGGEDFGVQRRRLGGMVDLVVASPGRLLQHYEKGHVFFSQVTHVVVDEMDTMLKDGFGPDLKRLMVPLEAKSKR---EKVQYLMATATLTPAVKRLMAEEGNFPKTRFLQSEDAHKSLPTMRHIMLDTKGG-DKVQLLLDVVSQGRQNGERAMIFCNTVQSCRAAEHALRELALPSACYHGDMRSEERAAALEKFKS--GEVSFLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDSLSAR--KRD 519 F LGL EE + L +LGI+ P+ IQ + IPA ++G V + TGSGKTLAY+LPI+Q L+ +E + G + RPRA++L PTREL QV V KS+SH + S + GG Q LGG +D++V +PGR+LQH E+G+V + + ++V+DE DTM GFGPD+++ + PL+ ++ + E Q ++ TAT+T AV++L+ EE F + L++ HK + + RH + G +K++ LL V+ G R M+FCNT+ S RA +H L E + YHG++ +E+R L KFKS G+ LVCTD+A+RGLD+ V+HVVMFDFPLN I+YLHR+GRTARMGAKGKVTSL+ K+D +LA+ ++ A+ K L++LS KRD Sbjct: 125 FEELGLSEEVMGALGELGIEVPTEIQSIGIPAVIEGKSVVLGSHTGSGKTLAYMLPIVQLLRQEEELHGMHMKPRRPRAVVLCPTRELCEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLGGPIDMIVGTPGRVLQHIEEGNVVYGDIRYLVLDEADTMFDRGFGPDIRKFLAPLKNRASKPGDEGFQTVLVTATMTKAVQKLVDEE--FQGIQHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLSENQFSTVNYHGEVPAEQRVENLAKFKSDEGDCPTLVCTDLAARGLDLD-VDHVVMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDLLLAARIEEAMMKNESLEALSVDGVKRD 518
BLAST of EWM29847.1 vs. NCBI_GenBank
Match: gi|697104637|ref|XP_009606120.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Nicotiana tomentosiformis]) HSP 1 Score: 346.28 bits (887), Expect = 3.265e-107 Identity = 181/397 (45.59%), Postives = 260/397 (65.49%), Query Frame = 0 Query: 131 FRRLGLGEETLEGLRKLGIKEPSVIQRLAIPAALKGDDVAFSASTGSGKTLAYLLPIMQELKWQEAVEGKERQTCRPRALILVPTRELVTQVLEVIKSLSHVIKLSSCGLHGGEDFGVQRRRLGGMVDLVVASPGRLLQHYEKGHVFFSQVTHVVVDEMDTMLKDGFGPDLKRLMVPLEAKSKR---EKVQYLMATATLTPAVKRLMAEEGNFPKTRFLQSEDAHKSLPTMRHIMLDTKGG-DKVQLLLDVVSQGRQNGERAMIFCNTVQSCRAAEHALRELALPSACYHGDMRSEERAAALEKFKS--GEVSFLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDSLSAR--KRD 519 F LGL EE + L +LGI+ P+ IQ + IPA ++G V + TGSGKTLAY+LPI+Q L+ +E + G + RPRA++L PTREL QV V KS+SH + S + GG Q LGG +D++V +PGR+LQH E+G+V + + ++V+DE DTM GFGPD+++ + PL+ ++ + E Q ++ TAT+T AV++L+ EE F + L++ HK + + RH + G +K++ LL V+ G R M+FCNT+ S RA +H L E + YHG++ +E+R L KFKS G+ LVCTD+A+RGLD+ V+HVVMFDFPLN I+YLHR+GRTARMGAKGKVTSL+ K+D +LA+ ++ A+ K L++LS KRD Sbjct: 125 FEELGLSEEVMGALGELGIEVPTEIQSIGIPAVIEGKSVVLGSHTGSGKTLAYMLPIVQLLRQEEELHGMHMKPRRPRAVVLCPTRELCEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLGGPIDMIVGTPGRVLQHIEEGNVVYGDIRYLVLDEADTMFDRGFGPDIRKFLAPLKNRASKPGDEGFQTVLVTATMTKAVQKLVDEE--FQGIQHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLSENQFSTVNYHGEVPAEQRVENLAKFKSDEGDCPTLVCTDLAARGLDLD-VDHVVMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDLLLAARIEEAMMKNESLEALSVDGVKRD 518
BLAST of EWM29847.1 vs. NCBI_GenBank
Match: gi|1109300472|ref|XP_019174996.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 39 isoform X1 [Ipomoea nil]) HSP 1 Score: 345.51 bits (885), Expect = 2.186e-106 Identity = 186/410 (45.37%), Postives = 261/410 (63.66%), Query Frame = 0 Query: 118 RSGDENAACDLAEFRRLGLGEETLEGLRKLGIKEPSVIQRLAIPAALKGDDVAFSASTGSGKTLAYLLPIMQELKWQEAVEGKERQTCRPRALILVPTRELVTQVLEVIKSLSHVIKLSSCGLHGGEDFGVQRRRLGGMVDLVVASPGRLLQHYEKGHVFFSQVTHVVVDEMDTMLKDGFGPDLKRLMVPLE---AKSKREKVQYLMATATLTPAVKRLMAEEGNFPKTRFLQSEDAHKSLPTMRHIMLDTKGG-DKVQLLLDVVSQGRQNGERAMIFCNTVQSCRAAEHALRELALPSACYHGDMRSEERAAALEKFK--SGEVSFLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDSLSAR--KRD 519 RSG +N A + + F LGL EE + L ++ I P+ IQ + IPA L+G V + TGSGKTLAYLLPI+Q L+ E + G + RPRA++L PTREL QV V KS+SH + S + GG Q L +D+VV +PGR+LQH E+G++ + + +VV+DE DTM GFGPD+++ + PL+ AK + Q ++ TAT+T AV++L+ EE F L++ HK + + RH + G +K++ LL V+ G R M+FCNT+ S RA +H L E + + YHG++ +E+R LEKFK G+ LVCTD+A+RGLD+ V+HV+MFDFP N I+YLHR+GRTARMGAKGKVTSL+ KRD +LA+ ++ A+ K L+SLS KRD Sbjct: 113 RSG-KNKAVEASSFEELGLSEEVMGALEEMNISLPTEIQAIGIPAVLRGKSVVLGSHTGSGKTLAYLLPIVQLLRRDEELYGILMKPRRPRAVVLCPTRELCEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNSPIDMVVGTPGRVLQHIEEGNLVYGDIRYVVLDEADTMFDRGFGPDIRKFLRPLKTRAAKVDDQGFQTVLVTATMTKAVQKLVDEE--FQGIEHLRTSSFHKKIASARHDFIRLSGSENKLEALLQVLEPSLSKGNRVMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEQRVENLEKFKRDDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVTSLVAKRDLLLATKIEEALKKNESLESLSVDSIKRD 518 The following BLAST results are available for this feature:
BLAST of EWM29847.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|