EWM29847.1, cds813 (CDS) Nannochloropsis gaditana

Overview
NameEWM29847.1
Unique Namecds813
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:481925..482007 +
Alignment locationCM002456.1:482169..483874 +
Alignment locationCM002456.1:483924..484051 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29847.1
ProductRNA helicase, DEAD-box type
Orig transcript idgnl|cribi|Naga_100017g4.345.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:481925..482007 +
CM002456.1supercontigCM002456.1:482169..483874 +
CM002456.1supercontigCM002456.1:483924..484051 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR014014RNA_helicase_DEAD_Q_motif
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
Homology
BLAST of EWM29847.1 vs. NCBI_GenBank
Match: gi|585112428|gb|EWM29847.1| (RNA helicase, DEAD-box type [Nannochloropsis gaditana])

HSP 1 Score: 1298.88 bits (3360), Expect = 0.000e+0
Identity = 638/638 (100.00%), Postives = 638/638 (100.00%), Query Frame = 0
Query:    1 MRRVFHEGTTGGEGIASALPNTATTASRAIHFQSRLRLAFRTTPSICALLLAMPLLLSPHWTRSVCVVSAFHLRPSTASKVSRGVGRSREVLRMMGAFGGISSQPFSTPAIPSKTTSRSGDENAACDLAEFRRLGLGEETLEGLRKLGIKEPSVIQRLAIPAALKGDDVAFSASTGSGKTLAYLLPIMQELKWQEAVEGKERQTCRPRALILVPTRELVTQVLEVIKSLSHVIKLSSCGLHGGEDFGVQRRRLGGMVDLVVASPGRLLQHYEKGHVFFSQVTHVVVDEMDTMLKDGFGPDLKRLMVPLEAKSKREKVQYLMATATLTPAVKRLMAEEGNFPKTRFLQSEDAHKSLPTMRHIMLDTKGGDKVQLLLDVVSQGRQNGERAMIFCNTVQSCRAAEHALRELALPSACYHGDMRSEERAAALEKFKSGEVSFLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDSLSARKRDYESGGKLSGLSSGKMGASPSSKGNRHAKYVANRQRSASGRAGSIEGSPEKGARGVRRAPSAPSGAQGPSRRRGRGDSAVAGGEDADVRWLHPCHTDGISTSVTKIIGIMLSLLLIFLIC 638
            MRRVFHEGTTGGEGIASALPNTATTASRAIHFQSRLRLAFRTTPSICALLLAMPLLLSPHWTRSVCVVSAFHLRPSTASKVSRGVGRSREVLRMMGAFGGISSQPFSTPAIPSKTTSRSGDENAACDLAEFRRLGLGEETLEGLRKLGIKEPSVIQRLAIPAALKGDDVAFSASTGSGKTLAYLLPIMQELKWQEAVEGKERQTCRPRALILVPTRELVTQVLEVIKSLSHVIKLSSCGLHGGEDFGVQRRRLGGMVDLVVASPGRLLQHYEKGHVFFSQVTHVVVDEMDTMLKDGFGPDLKRLMVPLEAKSKREKVQYLMATATLTPAVKRLMAEEGNFPKTRFLQSEDAHKSLPTMRHIMLDTKGGDKVQLLLDVVSQGRQNGERAMIFCNTVQSCRAAEHALRELALPSACYHGDMRSEERAAALEKFKSGEVSFLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDSLSARKRDYESGGKLSGLSSGKMGASPSSKGNRHAKYVANRQRSASGRAGSIEGSPEKGARGVRRAPSAPSGAQGPSRRRGRGDSAVAGGEDADVRWLHPCHTDGISTSVTKIIGIMLSLLLIFLIC
Sbjct:    1 MRRVFHEGTTGGEGIASALPNTATTASRAIHFQSRLRLAFRTTPSICALLLAMPLLLSPHWTRSVCVVSAFHLRPSTASKVSRGVGRSREVLRMMGAFGGISSQPFSTPAIPSKTTSRSGDENAACDLAEFRRLGLGEETLEGLRKLGIKEPSVIQRLAIPAALKGDDVAFSASTGSGKTLAYLLPIMQELKWQEAVEGKERQTCRPRALILVPTRELVTQVLEVIKSLSHVIKLSSCGLHGGEDFGVQRRRLGGMVDLVVASPGRLLQHYEKGHVFFSQVTHVVVDEMDTMLKDGFGPDLKRLMVPLEAKSKREKVQYLMATATLTPAVKRLMAEEGNFPKTRFLQSEDAHKSLPTMRHIMLDTKGGDKVQLLLDVVSQGRQNGERAMIFCNTVQSCRAAEHALRELALPSACYHGDMRSEERAAALEKFKSGEVSFLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDSLSARKRDYESGGKLSGLSSGKMGASPSSKGNRHAKYVANRQRSASGRAGSIEGSPEKGARGVRRAPSAPSGAQGPSRRRGRGDSAVAGGEDADVRWLHPCHTDGISTSVTKIIGIMLSLLLIFLIC 638          
BLAST of EWM29847.1 vs. NCBI_GenBank
Match: gi|298711833|emb|CBJ32858.1| (DEAD box helicase [Ectocarpus siliculosus])

HSP 1 Score: 472.626 bits (1215), Expect = 3.578e-158
Identity = 238/450 (52.89%), Postives = 324/450 (72.00%), Query Frame = 0
Query:  101 ISSQPFSTPAIPSKTTSRSGDENAACDLAEFRRLGLGEETLEGLRKLGIKEPSVIQRLAIPAALKGDDVAFSASTGSGKTLAYLLPIMQELKWQEAVEGKE----RQTCRPRALILVPTRELVTQVLEVIKSLSHVIKLSSCGLHGGEDFGVQRRRLGGMVDLVVASPGRLLQHYEKGHVFFSQVTHVVVDEMDTMLKDGFGPDLKRLMVPLEAK-SKREKVQYLMATATLTPAVKRLMAEEGNFPKTRFLQSEDAHKSLPTMRHIMLDTKGGDKVQLLLDVVSQGRQNGERAMIFCNTVQSCRAAEHALRELALPSACYHGDMRSEERAAALEKFKSGEVSFLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDSLSARKRDYESGGKLSGLSSGKMGASPSSKGNRH 545
            +S +PF  P            E    +  +F  LGL ++ ++ + + G   PS IQR AIP  L G ++ F+ASTGSGKTLAYL+P++Q+LK +EA   +     RQT RPRA++LVPTREL  QVLEV K LS   K SSCG+ GGED+G QR+RL G VD+VV +PGRLL+H+E G+ F S+  +VVVDE+DTML  GF  D+++L  PL A  ++R+  Q++  TATLT AV++L+ E+G++ K R +++ D H +LP++RH+M+D KG DK+  L+D+  Q  ++ +R ++FCNTV+SCRAAE  LRE+ + +  YHG++ S+ER++ LE+FK+G+  +LVCTDIASRGLDMP V+HVVMFDFPLNPI+YLHRSGRTARMGAKG+VTSLL KRD VLA+A++ AV  GLPLD LS+R+ DY +GGKL  L  G+ G   S KG+ H
Sbjct:    2 VSDRPFRGP------------EADVIEEMDFTGLGLLDDLVDAMEEFGFDSPSKIQRKAIPQILNGGNIVFAASTGSGKTLAYLMPLIQQLKVEEAQAEEGGESIRQTKRPRAIVLVPTRELAMQVLEVAKRLSRSCKFSSCGVVGGEDYGKQRQRLAGTVDIVVGTPGRLLKHHEAGNFFMSKANYVVVDEVDTMLTQGFAADIEKLNRPLLANPNRRDMAQFIFVTATLTKAVRKLLGEDGDYSKVRQVETRDVHHTLPSLRHVMIDIKGRDKMSALIDIAQQHLKDFKRTLVFCNTVKSCRAAEFGLREVDVKALSYHGEVPSDERSSNLERFKAGQAKYLVCTDIASRGLDMPDVDHVVMFDFPLNPIDYLHRSGRTARMGAKGRVTSLLAKRDLVLAAAIEQAVQSGLPLDELSSRRTDYATGGKLGPL-FGRKGKV-SVKGSHH 437          
BLAST of EWM29847.1 vs. NCBI_GenBank
Match: gi|873232203|emb|CEM06502.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 409.838 bits (1052), Expect = 9.935e-125
Identity = 214/446 (47.98%), Postives = 304/446 (68.16%), Query Frame = 0
Query:  128 LAEFRRLGLGEETLEGLRK-LGIKEPSVIQRLAIPAALKGDDVAFSASTGSGKTLAYLLPIMQELKWQEAVEGKE-RQTCRPRALILVPTRELVTQVLEVIKSLSHVIKLSSCGLHGGEDFGVQRRRLGGMVDLVVASPGRLLQHYEKGHVFFSQVTHVVVDEMDTMLKDGFGPDLKRLMVPLEAKSKREKVQYLMATATLTPAVKRLMAEEGNFPKTRFLQSEDAHKSLPTMRHIMLDTKGGDKVQLLLDVVS-QGRQ------NGER---------AMIFCNTVQSCRAAEHALRELALPSACYHGDMRSEERAAALEKFKSGEVSFLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDSLSARKRDYESGGKLSGLS-SGKMGASPSSKGNRHAKYVANRQR 554
            + ++RRLGL E    G    LG  EP+ IQRLAIP  L G ++ F+A TGSGKTLAYLLP+MQ LK +E ++G+  R+  RPRALIL PTREL  QVLEV++  S + KLSSC + GG+ F  Q+R L  ++D+VV +PGR+L H++K ++  S+V++VV+DE+DTML  GFGPD+ +L+ PL  +   E+ Q + ATATLT AV+RL+ +E + P  R++++   HKSLP +R+ M+DTKG DK+  L +++  +G Q      +G+R          ++FCNTV SCRA +HA++E    S  YHG++  E+R A LE F+ G+V +LVCTD+A+RGLD+  V+ VVMFDFPLNPI+++HR+GRT R G+KG V  LL +RD+VLA+ VQ A+  G PL  LS+ ++DYE GG+L  LS +G  G   + +     K + +R R
Sbjct:  843 MLKWRRLGLEESIARGTASMLGDVEPTAIQRLAIPQVLSGGNIVFAAETGSGKTLAYLLPMMQHLKSEE-LDGRSLRRPKRPRALILSPTRELSQQVLEVLRGSSQLAKLSSCSVIGGDSFAKQKRDLSKILDVVVGTPGRVLFHWDKSNLALSEVSYVVIDEVDTMLMQGFGPDINKLLQPLITRPDTEQPQLVFATATLTKAVRRLLDQE-DLPAVRYVEAPGLHKSLPNVRYEMIDTKGEDKLDALRELLKVRGPQRPAEGGDGQRGAGEVYRKSTLVFCNTVNSCRACQHAIQEAGFTSLAYHGEVPQEQRKANLEAFRHGQVPYLVCTDLAARGLDIAQVDQVVMFDFPLNPIDFIHRAGRTGRAGSKGSVLCLLQRRDRVLATGVQRAIRLGRPLSDLSSSRKDYEKGGRLEQLSQAGGFGIRKAERDLSRPKKLVDRAR 1286          
BLAST of EWM29847.1 vs. NCBI_GenBank
Match: gi|219126769|ref|XP_002183622.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404859|gb|EEC44804.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 366.696 bits (940), Expect = 2.963e-116
Identity = 206/496 (41.53%), Postives = 295/496 (59.48%), Query Frame = 0
Query:  102 SSQPFSTP-AIPSKTTSRSGDENAACDLAEFRRLGLGEETLEGLRKLGIKEPSVIQRLAIPAALKG--DDVAFSASTGSGKTLAYLLPIMQELKWQEAVEGKERQTCRPRALILVPTRELVTQVLEVIKSLSHVIKLSSCGLHGGEDFGVQRRRLGGMVDLVVASPGRLLQHYEKGHVFFSQVTHVVVDEMDTMLKDGFGPDLKRLMVP----------------LEAKSKREKVQYLMATATLTPAVKRLMAEEGN--------------------------FPKTRFLQSEDAHKSLPTMRHIMLDTKGGDKVQLLLDVVSQGRQNGERA----------MIFCNTVQSCRAAEHALRELALPSACYHGDMRSEERAAALEKFKSG-----------EVSFLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTAR-----MGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDSLSARKRDYESGGKL 526
            S  PF  P   P  +  ++    A  +L  + +LGL  E +E + +L ++ P+ +Q+LAIP  LK     +AF A+TGSGKTLAY LP++Q LK  E     ER+  RPR LILVPTRELV Q+  VIKS+SH IKLSSC + GGED+GVQRR+L   +D+VVA+PGRL +H++  ++F   + H+VVDEMDTML+ GF  +L++L+ P                L+AK+ R     ++ +AT+T  +++++ +  N                           P+T+ L++   HK++P ++ + +D    DK+ LL+D+VS G      A          MIFCNT  SCRAA+ AL E  + S  YHGD+ S  R+  L++F++            E   LVCTD+A+RGLD+P V+H+VMFDFPLN ++YLHRSGRTAR         G+VT+L++KRDKVLA+A++ AV +G  LD LS+RK DY  G +L
Sbjct:    4 SRAPFRMPRDSPDDSVPQAA---AKTNLLAWNQLGLWTELVEAMARLELQTPTPVQQLAIPELLKEPPQHLAFLAATGSGKTLAYALPLLQMLKQGEVFADYERRPKRPRLLILVPTRELVVQITSVIKSVSHSIKLSSCSITGGEDYGVQRRQLNRPIDVVVATPGRLTKHWKDSNLFLGSLEHIVVDEMDTMLEQGFYRELRQLLYPVLYHKQADQEINVEQDLDAKAPR----IVLTSATMTQQIQKIIGDSDNKKNLVNAKRHHRKVEDAGFQVKVPMVLPRTKVLKAAGLHKTVPRLQQVFVDVGATDKLSLLVDIVSSGGSGAAVAASLTDQQALTMIFCNTAASCRAAQFALSEARIESLAYHGDLNSAMRSENLKRFRAAGKKNCDNALAEEPRVLVCTDLAARGLDVPQVDHIVMFDFPLNALDYLHRSGRTARGVGGDRTGNGRVTALISKRDKVLANAIEQAVLRGDTLDGLSSRKSDYLPGARL 492          
BLAST of EWM29847.1 vs. NCBI_GenBank
Match: gi|1210520414|dbj|GAX20845.1| (hypothetical protein FisN_7Hh160 [Fistulifera solaris])

HSP 1 Score: 353.214 bits (905), Expect = 1.413e-110
Identity = 196/508 (38.58%), Postives = 304/508 (59.84%), Query Frame = 0
Query:   98 FGGISSQPFSTPAIPSKTTSRSGDENAACDLAEFRRLGLGEETLEGLR-KLGIKEPSVIQRLAIPAALKGDD-VAFSASTGSGKTLAYLLPIMQELKWQEAVEGKERQTCRPRALILVPTRELVTQVLEVIKSLSHVIKLSSC-GLHG-GEDFGVQRRRLGGMVDLVVASPGRLLQHYEKGHVFFSQVTHVVVDEMDTMLKDGFGPDLKRLMVPLEAKSKR-------------EKVQYLMATATLTPAVKRLMAEEG------------------------NFPKTRFLQSEDAHKSLPTMRHIMLDTKGGDKVQLLLDVVSQGRQNGERAMIFCNTVQSCRAAEHALRELALPSACYHGDMRSEERAAALEKFKSGEVS-FLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDSLSARKRDY----ESGGKLSGLSSGKMGASP--SSKGNRHAKYVANRQRSAS 557
            F    +  FS    P     +S +E        +  LGL     + +R +LG   P+ +Q+LAIPA LK  D V+F A+TGSGKTLAY LP++Q  K  +     ER + RPR +IL PTRELV Q+  ++K + H +KLS   GL+G  + +G QR+ L   +D+VVA+PGRLL+H++ G+++ S+V H+V+DEMDT+++ GF  DL+ L+ P+    +              +  + +  +AT+T A+++++ ++                           PK + L+++  H+++P ++ + +D  G DK+ LLLD+++   Q   R M+FCNT  SCRA + AL E+++PS  YHG++ S  R   L+ F+S + +  LVCTD+A+RGLD+P V+HVV+FDFPLN ++YLHR+GRTAR G KGKVT+L+ KRDKVLA+A++ AV  G P+D LS+RK DY     S    +G    ++G S    ++G+   + VA  +R++S
Sbjct:   53 FATNDASAFSKSRAPFTNPEQSQEETDGGKSVTWNSLGLWPLLSDFVRDELGFTSPTPVQKLAIPAVLKQKDHVSFLAATGSGKTLAYALPLLQLCKLHDVSTDGERPSKRPRLIILAPTRELVVQITGIVKQICHGLKLSCAGGLYGSSKSYGRQRQDLDRPIDIVVATPGRLLKHWKDGNIYLSRVQHIVLDEMDTIVEQGFVGDLRELLYPIMYHKQAGQKGIDPATDLQVDAPRLVFTSATMTQAIQKILGDDELVGAKKHHQTNTAAKPSAPNQPLLLLPKMKVLKAKGLHQTVPHLQQVFVDVGGSDKINLLLDLLAS--QRSARTMVFCNTAASCRAVQFALSEVSVPSLAYHGELNSAARLENLKLFRSSDQNQVLVCTDLAARGLDIPTVDHVVLFDFPLNALDYLHRTGRTARQGQKGKVTALVAKRDKVLANAIERAVTSGQPIDGLSSRKSDYAQQQTSPSTKAGRGPSRLGPSSRGGARGSSRPRTVATNKRTSS 558          
BLAST of EWM29847.1 vs. NCBI_GenBank
Match: gi|1210529684|dbj|GAX11778.1| (hypothetical protein FisN_7Lh160 [Fistulifera solaris])

HSP 1 Score: 352.443 bits (903), Expect = 1.798e-110
Identity = 201/503 (39.96%), Postives = 305/503 (60.64%), Query Frame = 0
Query:  102 SSQPFSTPAIPSKTTSRSGDENAACDLAEFRRLGLGEETLEGLR-KLGIKEPSVIQRLAIPAALKGDD-VAFSASTGSGKTLAYLLPIMQELKWQEAVEGKERQTCRPRALILVPTRELVTQVLEVIKSLSHVIKLSSC-GLHG-GEDFGVQRRRLGGMVDLVVASPGRLLQHYEKGHVFFSQVTHVVVDEMDTMLKDGFGPDLKRLMVPL------------EAKSKREKVQYLMAT-ATLTPAVKRLMAE----------EGN--------------FPKTRFLQSEDAHKSLPTMRHIMLDTKGGDKVQLLLDVVSQGRQNGERAMIFCNTVQSCRAAEHALRELALPSACYHGDMRSEERAAALEKFKSGEVS-FLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDSLSARKRDY-ESGGKLSGLSSGKMGASPSSKG----NRHAKYVANRQRSAS 557
            S  PF+ P +       S ++        +  LGL     + +R +LG   P+ +Q+LAIPA LK  D V+F A+TGSGKTLAY LP++Q  K Q+     ER + RPR +IL PTRELV Q+  ++K + H +KLS   GL+G  + +G QR+ L   +D+VVA+PGRLL+H++ G+++ S+V H+V+DEMDT+++ GF  DL+ L+ P+             A   +E    L+ T AT+T A+++++ +          + N               PK + L+++  H+++P ++ + +D  G +K+ LLLD+++   Q   R M+FCNT  SCRA + AL E+++PS  YHG++ S  R   L+ F+S + S  LVCTD+A+RGLD+P V+HVV+FDFPLN ++YLHR+GRTAR G KGKVT+L+ KRDKVLA+A++ AV  G P+D LS+RK DY +     +    G     PSS+G    +   + VA  +R++S
Sbjct:   56 SRAPFTNPKL-------SQEDTDGGKTVTWNSLGLWPHLSDFVRDELGFASPTPVQKLAIPAVLKQKDHVSFLAATGSGKTLAYALPLLQLCKLQDVSMDGERPSKRPRLIILAPTRELVVQITGIVKQICHGLKLSCAGGLYGSSKSYGRQRQDLDRPIDIVVATPGRLLKHWKDGNIYLSRVQHIVLDEMDTIVEQGFVGDLRELLYPIMYHKQAGQKGIDPATDLQEDAPRLVFTSATMTQAIQKILGDDELVGAKKHHQTNSAAKPSAPNQPLLLLPKMKVLKAKGLHQTVPHLQQVFVDVGGSNKINLLLDLLAS--QKSARTMVFCNTAASCRAVQFALSEVSVPSLAYHGELNSAARLENLKLFRSSDQSQVLVCTDLAARGLDIPTVDHVVLFDFPLNALDYLHRTGRTARQGQKGKVTALVAKRDKVLANAIERAVTSGQPIDGLSSRKSDYAQQTSPSTKPGRGPSRPGPSSRGGARRSSRPRTVATNKRTSS 549          
BLAST of EWM29847.1 vs. NCBI_GenBank
Match: gi|1026767671|gb|OAE27937.1| (hypothetical protein AXG93_3309s1340 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 350.903 bits (899), Expect = 3.412e-109
Identity = 190/439 (43.28%), Postives = 272/439 (61.96%), Query Frame = 0
Query:   89 REVLRMMGAFGGI--SSQPFSTPAIPSKTTSRSGDENAACDLAEFRRLGLGEETLEGLRKLGIKEPSVIQRLAIPAALKGDDVAFSASTGSGKTLAYLLPIMQELKWQEAVEGKERQTCRPRALILVPTRELVTQVLEVIKSLSHVIKLSSCGLHGGEDFGVQRRRLGGMVDLVVASPGRLLQHYEKGHVFFSQVTHVVVDEMDTMLKDGFGPDLKRLMVPLEAKSKR---EKVQYLMATATLTPAVKRLMAEEGNFPKTRFLQSEDAHKSLPTMRHIMLDTKGG-DKVQLLLDVVSQGRQNGERAMIFCNTVQSCRAAEHALRELALPSACYHGDMRSEERAAALEKFK--SGEVSF--LVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDSLSARK 517
            R+V R  G   G   S++P STP   S                 F +LGL +E +  + +LGI +P+ +Q L IPA   G+ V  ++ TGSGKTLAY+LPI+Q L+  EA  GK  +  RPRA++L PTREL  QV  V KSL H  +  +  + GG     Q   L   VD+VV +PGRLL H ++GH+ +  + +V +DE DTM   GFGP++++ + PL  +S +      Q ++ TAT+T AV++++ EE  FP  R + +   HK + + RH  L   G  +K++ L  V+      G R M+FCNT+ SCRA +H LRE  + +  YHG++ +EER   L KFK  +G  SF  LVCTD+A+RGLD+  V+HV+MFDFPLNP++YLHR+GRTARMGAKGKVTSL+TKRD  LA  ++ A+++G  L++L++ +
Sbjct:   82 RDVPRPPGRLSGKEESAKPVSTPLAQS-----------------FEQLGLSDELMSAVIELGISKPTEVQSLGIPAVSNGESVVLASHTGSGKTLAYMLPIVQALRRDEAESGKATRARRPRAVVLCPTRELAEQVFHVAKSLCHHARFRAAMIGGGLKMKPQEDILNSAVDMVVGTPGRLLMHVKEGHMAYGDIKYVALDEADTMFDRGFGPEVRKFLGPLRNRSSQPGGTGFQTVLVTATITKAVQKVLDEE--FPGIRHIHTSTLHKKVSSARHDFLKLSGTENKLEALQQVLEPSLAKGNRVMVFCNTLNSCRAIDHFLRENGIQTVNYHGEIPAEERVENLNKFKEETGARSFPALVCTDLAARGLDL-VVDHVIMFDFPLNPVDYLHRTGRTARMGAKGKVTSLVTKRDSTLAGQIEDAMSRGESLEALTSSR 500          
BLAST of EWM29847.1 vs. NCBI_GenBank
Match: gi|1025330464|ref|XP_016506152.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Nicotiana tabacum])

HSP 1 Score: 346.665 bits (888), Expect = 3.031e-107
Identity = 181/397 (45.59%), Postives = 260/397 (65.49%), Query Frame = 0
Query:  131 FRRLGLGEETLEGLRKLGIKEPSVIQRLAIPAALKGDDVAFSASTGSGKTLAYLLPIMQELKWQEAVEGKERQTCRPRALILVPTRELVTQVLEVIKSLSHVIKLSSCGLHGGEDFGVQRRRLGGMVDLVVASPGRLLQHYEKGHVFFSQVTHVVVDEMDTMLKDGFGPDLKRLMVPLEAKSKR---EKVQYLMATATLTPAVKRLMAEEGNFPKTRFLQSEDAHKSLPTMRHIMLDTKGG-DKVQLLLDVVSQGRQNGERAMIFCNTVQSCRAAEHALRELALPSACYHGDMRSEERAAALEKFKS--GEVSFLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDSLSAR--KRD 519
            F  LGL EE +  L +LGI+ P+ IQ + IPA ++G  V   + TGSGKTLAY+LPI+Q L+ +E + G   +  RPRA++L PTREL  QV  V KS+SH  +  S  + GG     Q   LGG +D++V +PGR+LQH E+G+V +  + ++V+DE DTM   GFGPD+++ + PL+ ++ +   E  Q ++ TAT+T AV++L+ EE  F   + L++   HK + + RH  +   G  +K++ LL V+      G R M+FCNT+ S RA +H L E    +  YHG++ +E+R   L KFKS  G+   LVCTD+A+RGLD+  V+HVVMFDFPLN I+YLHR+GRTARMGAKGKVTSL+ K+D +LA+ ++ A+ K   L++LS    KRD
Sbjct:  125 FEELGLSEEVMGALGELGIEVPTEIQSIGIPAVIEGKSVVLGSHTGSGKTLAYMLPIVQLLRQEEELHGMHMKPRRPRAVVLCPTRELCEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLGGPIDMIVGTPGRVLQHIEEGNVVYGDIRYLVLDEADTMFDRGFGPDIRKFLAPLKNRASKPGDEGFQTVLVTATMTKAVQKLVDEE--FQGIQHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLSENQFSTVNYHGEVPAEQRVENLAKFKSDEGDCPTLVCTDLAARGLDLD-VDHVVMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDLLLAARIEEAMMKNESLEALSVDGVKRD 518          
BLAST of EWM29847.1 vs. NCBI_GenBank
Match: gi|697104637|ref|XP_009606120.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Nicotiana tomentosiformis])

HSP 1 Score: 346.28 bits (887), Expect = 3.265e-107
Identity = 181/397 (45.59%), Postives = 260/397 (65.49%), Query Frame = 0
Query:  131 FRRLGLGEETLEGLRKLGIKEPSVIQRLAIPAALKGDDVAFSASTGSGKTLAYLLPIMQELKWQEAVEGKERQTCRPRALILVPTRELVTQVLEVIKSLSHVIKLSSCGLHGGEDFGVQRRRLGGMVDLVVASPGRLLQHYEKGHVFFSQVTHVVVDEMDTMLKDGFGPDLKRLMVPLEAKSKR---EKVQYLMATATLTPAVKRLMAEEGNFPKTRFLQSEDAHKSLPTMRHIMLDTKGG-DKVQLLLDVVSQGRQNGERAMIFCNTVQSCRAAEHALRELALPSACYHGDMRSEERAAALEKFKS--GEVSFLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDSLSAR--KRD 519
            F  LGL EE +  L +LGI+ P+ IQ + IPA ++G  V   + TGSGKTLAY+LPI+Q L+ +E + G   +  RPRA++L PTREL  QV  V KS+SH  +  S  + GG     Q   LGG +D++V +PGR+LQH E+G+V +  + ++V+DE DTM   GFGPD+++ + PL+ ++ +   E  Q ++ TAT+T AV++L+ EE  F   + L++   HK + + RH  +   G  +K++ LL V+      G R M+FCNT+ S RA +H L E    +  YHG++ +E+R   L KFKS  G+   LVCTD+A+RGLD+  V+HVVMFDFPLN I+YLHR+GRTARMGAKGKVTSL+ K+D +LA+ ++ A+ K   L++LS    KRD
Sbjct:  125 FEELGLSEEVMGALGELGIEVPTEIQSIGIPAVIEGKSVVLGSHTGSGKTLAYMLPIVQLLRQEEELHGMHMKPRRPRAVVLCPTRELCEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLGGPIDMIVGTPGRVLQHIEEGNVVYGDIRYLVLDEADTMFDRGFGPDIRKFLAPLKNRASKPGDEGFQTVLVTATMTKAVQKLVDEE--FQGIQHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLSENQFSTVNYHGEVPAEQRVENLAKFKSDEGDCPTLVCTDLAARGLDLD-VDHVVMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDLLLAARIEEAMMKNESLEALSVDGVKRD 518          
BLAST of EWM29847.1 vs. NCBI_GenBank
Match: gi|1109300472|ref|XP_019174996.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 39 isoform X1 [Ipomoea nil])

HSP 1 Score: 345.51 bits (885), Expect = 2.186e-106
Identity = 186/410 (45.37%), Postives = 261/410 (63.66%), Query Frame = 0
Query:  118 RSGDENAACDLAEFRRLGLGEETLEGLRKLGIKEPSVIQRLAIPAALKGDDVAFSASTGSGKTLAYLLPIMQELKWQEAVEGKERQTCRPRALILVPTRELVTQVLEVIKSLSHVIKLSSCGLHGGEDFGVQRRRLGGMVDLVVASPGRLLQHYEKGHVFFSQVTHVVVDEMDTMLKDGFGPDLKRLMVPLE---AKSKREKVQYLMATATLTPAVKRLMAEEGNFPKTRFLQSEDAHKSLPTMRHIMLDTKGG-DKVQLLLDVVSQGRQNGERAMIFCNTVQSCRAAEHALRELALPSACYHGDMRSEERAAALEKFK--SGEVSFLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDSLSAR--KRD 519
            RSG +N A + + F  LGL EE +  L ++ I  P+ IQ + IPA L+G  V   + TGSGKTLAYLLPI+Q L+  E + G   +  RPRA++L PTREL  QV  V KS+SH  +  S  + GG     Q   L   +D+VV +PGR+LQH E+G++ +  + +VV+DE DTM   GFGPD+++ + PL+   AK   +  Q ++ TAT+T AV++L+ EE  F     L++   HK + + RH  +   G  +K++ LL V+      G R M+FCNT+ S RA +H L E  + +  YHG++ +E+R   LEKFK   G+   LVCTD+A+RGLD+  V+HV+MFDFP N I+YLHR+GRTARMGAKGKVTSL+ KRD +LA+ ++ A+ K   L+SLS    KRD
Sbjct:  113 RSG-KNKAVEASSFEELGLSEEVMGALEEMNISLPTEIQAIGIPAVLRGKSVVLGSHTGSGKTLAYLLPIVQLLRRDEELYGILMKPRRPRAVVLCPTRELCEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNSPIDMVVGTPGRVLQHIEEGNLVYGDIRYVVLDEADTMFDRGFGPDIRKFLRPLKTRAAKVDDQGFQTVLVTATMTKAVQKLVDEE--FQGIEHLRTSSFHKKIASARHDFIRLSGSENKLEALLQVLEPSLSKGNRVMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEQRVENLEKFKRDDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVTSLVAKRDLLLATKIEEALKKNESLESLSVDSIKRD 518          
The following BLAST results are available for this feature:
BLAST of EWM29847.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112428|gb|EWM29847.1|0.000e+0100.00RNA helicase, DEAD-box type [Nannochloropsis gadit... [more]
gi|298711833|emb|CBJ32858.1|3.578e-15852.89DEAD box helicase [Ectocarpus siliculosus][more]
gi|873232203|emb|CEM06502.1|9.935e-12547.98unnamed protein product [Vitrella brassicaformis C... [more]
gi|219126769|ref|XP_002183622.1|2.963e-11641.53predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210520414|dbj|GAX20845.1|1.413e-11038.58hypothetical protein FisN_7Hh160 [Fistulifera sola... [more]
gi|1210529684|dbj|GAX11778.1|1.798e-11039.96hypothetical protein FisN_7Lh160 [Fistulifera sola... [more]
gi|1026767671|gb|OAE27937.1|3.412e-10943.28hypothetical protein AXG93_3309s1340 [Marchantia p... [more]
gi|1025330464|ref|XP_016506152.1|3.031e-10745.59PREDICTED: DEAD-box ATP-dependent RNA helicase 39-... [more]
gi|697104637|ref|XP_009606120.1|3.265e-10745.59PREDICTED: DEAD-box ATP-dependent RNA helicase 39 ... [more]
gi|1109300472|ref|XP_019174996.1|2.186e-10645.37PREDICTED: DEAD-box ATP-dependent RNA helicase 39 ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna813rna813Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications