EWM22571.1, cds8104 (CDS) Nannochloropsis gaditana

Overview
NameEWM22571.1
Unique Namecds8104
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:639175..639680 +
Alignment locationKK037247.1:639948..640156 +
Alignment locationKK037247.1:640323..640376 +
Alignment locationKK037247.1:640605..640996 +

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Properties
Property NameValue
Protein idEWM22571.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100993g1.6882.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:639175..639680 +
KK037247.1supercontigKK037247.1:639948..640156 +
KK037247.1supercontigKK037247.1:640323..640376 +
KK037247.1supercontigKK037247.1:640605..640996 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of EWM22571.1 vs. NCBI_GenBank
Match: gi|585103124|gb|EWM22571.1| (hypothetical protein Naga_100993g1 [Nannochloropsis gaditana])

HSP 1 Score: 763.066 bits (1969), Expect = 0.000e+0
Identity = 386/386 (100.00%), Postives = 386/386 (100.00%), Query Frame = 0 
Query:    1 MARKSGPSTREKWKLLPLLLLPLLHPAAAFVPPYRNPDIAFDAREALVTDNRVESISFRRLSVKCAEATSSAPPASPPQRPPSSPRSSEANQRSVISSTLPGGNWPPNGFRPFKSLREENGDVVLDVDEPHQPLIAPLTSQFFAGFQLRELDDSNMNTFLKDTGKIQKTLRTLLWFAYLLWPYIGFGIFSSILAQLLLATVSQEHVEQGSFLTMLDVKDYPDLKIGHGFIGSILGFSIAFRTNAAYDRYYEVAKSSASSWRTAVPSSETCTPSSSRLPPFPLQPPPAPPSPSLTTPPSSSSAATSDVASTSSSPSSASRCGSPCRAFRPTRTWVRSLSPTPPSTSTPPSPTSSTSFPRRKQNATRLSPLAPAPVLSRRRLISFFRF 386
            MARKSGPSTREKWKLLPLLLLPLLHPAAAFVPPYRNPDIAFDAREALVTDNRVESISFRRLSVKCAEATSSAPPASPPQRPPSSPRSSEANQRSVISSTLPGGNWPPNGFRPFKSLREENGDVVLDVDEPHQPLIAPLTSQFFAGFQLRELDDSNMNTFLKDTGKIQKTLRTLLWFAYLLWPYIGFGIFSSILAQLLLATVSQEHVEQGSFLTMLDVKDYPDLKIGHGFIGSILGFSIAFRTNAAYDRYYEVAKSSASSWRTAVPSSETCTPSSSRLPPFPLQPPPAPPSPSLTTPPSSSSAATSDVASTSSSPSSASRCGSPCRAFRPTRTWVRSLSPTPPSTSTPPSPTSSTSFPRRKQNATRLSPLAPAPVLSRRRLISFFRF
Sbjct:    1 MARKSGPSTREKWKLLPLLLLPLLHPAAAFVPPYRNPDIAFDAREALVTDNRVESISFRRLSVKCAEATSSAPPASPPQRPPSSPRSSEANQRSVISSTLPGGNWPPNGFRPFKSLREENGDVVLDVDEPHQPLIAPLTSQFFAGFQLRELDDSNMNTFLKDTGKIQKTLRTLLWFAYLLWPYIGFGIFSSILAQLLLATVSQEHVEQGSFLTMLDVKDYPDLKIGHGFIGSILGFSIAFRTNAAYDRYYEVAKSSASSWRTAVPSSETCTPSSSRLPPFPLQPPPAPPSPSLTTPPSSSSAATSDVASTSSSPSSASRCGSPCRAFRPTRTWVRSLSPTPPSTSTPPSPTSSTSFPRRKQNATRLSPLAPAPVLSRRRLISFFRF 386
[Close]
BLAST of EWM22571.1 vs. NCBI_GenBank
Match: gi|553194865|ref|XP_005856043.1| (membrane protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293015|gb|EKU20316.1| membrane protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 308.916 bits (790), Expect = 1.919e-100
Identity = 144/146 (98.63%), Postives = 144/146 (98.63%), Query Frame = 0 
Query:  109 GFRPFKSLREENGDVVLDVDEPHQPLIAPLTSQFFAGFQLRELDDSNMNTFLKDTGKIQKTLRTLLWFAYLLWPYIGFGIFSSILAQLLLATVSQEHVEQGSFLTMLDVKDYPDLKIGHGFIGSILGFSIAFRTNAAYDRYYEVAK 254
            GFRPFKSLREENGDVVLDVDEPHQPLIAPLTSQFFAGFQLRELDDSNMNTFLKDTGKIQKTLRTLLWFAYLLWPYIGFGIFSSILAQLLLATVSQEHVEQGSFLTMLDVKDYPDLKIGHGFIGSILGFSIAFRTNAAYDRYYE  K
Sbjct:    1 GFRPFKSLREENGDVVLDVDEPHQPLIAPLTSQFFAGFQLRELDDSNMNTFLKDTGKIQKTLRTLLWFAYLLWPYIGFGIFSSILAQLLLATVSQEHVEQGSFLTMLDVKDYPDLKIGHGFIGSILGFSIAFRTNAAYDRYYEGRK 146
The following BLAST results are available for this feature:
BLAST of EWM22571.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585103124|gb|EWM22571.1|0.000e+0100.00hypothetical protein Naga_100993g1 [Nannochloropsi... [more]
gi|553194865|ref|XP_005856043.1|1.919e-10098.63membrane protein, partial [Nannochloropsis gaditan... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8128rna8128Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications