EWM22613.1, cds8080 (CDS) Nannochloropsis gaditana

Overview
NameEWM22613.1
Unique Namecds8080
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:565338..565815 -
Alignment locationKK037247.1:564825..565222 -
Alignment locationKK037247.1:564502..564717 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22613.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100126g1.3039.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:565338..565815 -
KK037247.1supercontigKK037247.1:564825..565222 -
KK037247.1supercontigKK037247.1:564502..564717 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM22613.1 vs. NCBI_GenBank
Match: gi|585103176|gb|EWM22613.1| (hypothetical protein Naga_100126g1 [Nannochloropsis gaditana])

HSP 1 Score: 715.301 bits (1845), Expect = 0.000e+0
Identity = 363/363 (100.00%), Postives = 363/363 (100.00%), Query Frame = 0 
Query:    1 MVVGNATTLTSPFVSHFSDVTLVESSESITWRTGNASLSADAVAIDSSETLEMVVGNATTLTSPFVSQFSDVTLVESSESITWRASNASLSSTILDIRNQNTTIMAYNEIEIVSPSIDMVGVVTLGNETTTGQLVILNGVRSDLMETITADGTTGELSSVSMVTGDLVATRLLPGTAANGSITANNLVLEYDSGLPEPSQITSTIGTDQTGTTVLSNGVQVGANSTAQLTAGVVAFTGLAVQATGMPSSFSTLSRADCTDPINPCSLTLTGSGPGVYALGINLPNIGNAIPEVYVDNIFYEDSTPPNTGEMIFLYQSGSTPVNFVANTGGNIAGSMPLNVTKTLQSGEFTMFLFVASEWSAFA 363
            MVVGNATTLTSPFVSHFSDVTLVESSESITWRTGNASLSADAVAIDSSETLEMVVGNATTLTSPFVSQFSDVTLVESSESITWRASNASLSSTILDIRNQNTTIMAYNEIEIVSPSIDMVGVVTLGNETTTGQLVILNGVRSDLMETITADGTTGELSSVSMVTGDLVATRLLPGTAANGSITANNLVLEYDSGLPEPSQITSTIGTDQTGTTVLSNGVQVGANSTAQLTAGVVAFTGLAVQATGMPSSFSTLSRADCTDPINPCSLTLTGSGPGVYALGINLPNIGNAIPEVYVDNIFYEDSTPPNTGEMIFLYQSGSTPVNFVANTGGNIAGSMPLNVTKTLQSGEFTMFLFVASEWSAFA
Sbjct:    1 MVVGNATTLTSPFVSHFSDVTLVESSESITWRTGNASLSADAVAIDSSETLEMVVGNATTLTSPFVSQFSDVTLVESSESITWRASNASLSSTILDIRNQNTTIMAYNEIEIVSPSIDMVGVVTLGNETTTGQLVILNGVRSDLMETITADGTTGELSSVSMVTGDLVATRLLPGTAANGSITANNLVLEYDSGLPEPSQITSTIGTDQTGTTVLSNGVQVGANSTAQLTAGVVAFTGLAVQATGMPSSFSTLSRADCTDPINPCSLTLTGSGPGVYALGINLPNIGNAIPEVYVDNIFYEDSTPPNTGEMIFLYQSGSTPVNFVANTGGNIAGSMPLNVTKTLQSGEFTMFLFVASEWSAFA 363
[Close]
BLAST of EWM22613.1 vs. NCBI_GenBank
Match: gi|585103154|gb|EWM22592.1| (hypothetical protein Naga_100483g1 [Nannochloropsis gaditana])

HSP 1 Score: 140.969 bits (354), Expect = 8.992e-36
Identity = 72/74 (97.30%), Postives = 72/74 (97.30%), Query Frame = 0 
Query:    1 MVVGNATTLTSPFVSHFSDVTLVESSESITWRTGNASLSADAVAIDSSETLEMVVGNATTLTSPFVSQFSDVTL 74
            MVVGNATTLTSPFVSHFSDVTLVESSESITWRTGNASLSADAV IDSSETLEMVVGNATTLTSPFVS FSDVTL
Sbjct:  200 MVVGNATTLTSPFVSHFSDVTLVESSESITWRTGNASLSADAVTIDSSETLEMVVGNATTLTSPFVSHFSDVTL 273

HSP 2 Score: 90.1225 bits (222), Expect = 6.048e-17
Identity = 52/84 (61.90%), Postives = 59/84 (70.24%), Query Frame = 0 
Query:   43 VAIDSSETLEMVVGNATTLTSPFVSQFSDVTLVESSESITWRASNASLSSTILDIRNQNTTIMAY-NEIEIVSPSIDMVGVVTL 125
            + +DSSETLEMVVGNATTLTSPFVS FSDVTLVESSESITWR  NASLS+  + I +  T  M   N   + SP +     VTL
Sbjct:  190 ILVDSSETLEMVVGNATTLTSPFVSHFSDVTLVESSESITWRTGNASLSADAVTIDSSETLEMVVGNATTLTSPFVSHFSDVTL 273
The following BLAST results are available for this feature:
BLAST of EWM22613.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585103176|gb|EWM22613.1|0.000e+0100.00hypothetical protein Naga_100126g1 [Nannochloropsi... [more]
gi|585103154|gb|EWM22592.1|8.992e-3697.30hypothetical protein Naga_100483g1 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8102rna8102Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications